Atom Nomenclature for 30E

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 30E

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
C04 C04
N05 N05
C06 C06
N07 N07
C08 C08
C09 C09
C10 C10
C11 C11
O12 O12
C13 C13
C14 C14
O15 O15
C16 C16
C17 C17
O18 O18
C19 C19
C20 C20
C21 C21
N22 N22
C23 C23
N24 N24
C25 C25
C26 C26
C27 C27
C28 C28
O29 O29
O30 O30
H011 H011
H012 H012
H013 H013
H021 H021
H022 H022
H03 H03
H041 H041
H042 H042
H27 H27
H251 H251
H252 H252
H21 H21
H10 H10
H20 H20
H131 H131
H132 H132
H133 H133
H161 H161
H162 H162
H163 H163
H191 H191
H192 H192
H193 H193
H241 H241
H242 H242
H261 H261
H262 H262
H30 H30