PDB Chemical Component 2Z5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2Z5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.454 1.507
C1 O 1.223 1.212
C2 F1 1.277 1.399
C2 F2 1.257 1.399
C2 F3 1.308 1.399
N CA 1.439 1.466
N H 1.000 0.970
CA C 1.499 1.507
CA CB 1.599 1.529
CA HA 1.100 1.091
C O1 1.199 1.213
CB CG 1.502 1.531
CB HB2 1.100 1.090
CB HB3 1.100 1.091
CG CD 1.485 1.529
CG HG2 1.100 1.090
CG HG3 1.101 1.091
CD CE 1.533 1.531
CD HD2 1.100 1.090
CD HD3 1.100 1.090
CE NZ 1.535 1.469
CE HE2 1.100 1.090
CE HE3 1.100 1.090
NZ HZ1 1.000 1.009
NZ HZ2 1.000 1.009
NZ HZ3 1.000 1.009
N1 CA1 1.498 1.465
N1 H1 1.000 0.970
CA1 C3 1.588 1.507
CA1 CB1 1.552 1.530
CA1 HA1 1.100 1.090
C3 O2 1.354 1.213
CB1 HB1 1.100 1.090
CB1 HB21 1.100 1.090
CB1 HB31 1.100 1.089
N2 C11 1.381 1.399
N2 HN2 1.000 0.970
C11 C21 1.387 1.388
C11 C6 1.418 1.389
C21 C31 1.404 1.381
C21 H2 1.080 1.081
C31 C4 1.400 1.383
C31 H3 1.080 1.080
C4 C5 1.394 1.383
C4 C7 1.521 1.507
C5 C6 1.423 1.381
C5 H5 1.080 1.079
C6 H6 1.080 1.081
C7 F11 1.285 1.399
C7 F21 1.277 1.399
C7 F31 1.288 1.399
C1 N 1.287 1.348
C N1 1.381 1.348
C3 N2 1.279 1.347

Bond Angles for 2Z5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O 118.5 120.0
C1 C2 F1 105.7 109.5
C1 C2 F2 124.8 109.5
C1 C2 F3 104.0 109.4
C2 C1 N 129.9 120.0
O C1 N 111.3 120.0
F1 C2 F2 106.1 109.5
F1 C2 F3 97.0 109.5
F2 C2 F3 115.3 109.5
CA N H 113.8 120.0
N CA C 113.6 109.4
N CA CB 105.8 109.5
N CA HA 110.0 109.5
C1 N CA 132.4 120.0
C1 N H 113.8 120.1
C CA CB 111.5 109.5
C CA HA 104.1 109.5
CA C O1 116.8 120.0
CA C N1 124.0 120.0
CB CA HA 112.1 109.5
CA CB CG 108.0 109.5
CA CB HB2 110.0 109.5
CA CB HB3 110.3 109.5
O1 C N1 119.3 120.0
CG CB HB2 110.0 109.5
CG CB HB3 110.3 109.4
CB CG CD 126.5 109.5
CB CG HG2 104.1 109.5
CB CG HG3 100.1 109.4
HB2 CB HB3 108.3 109.5
CD CG HG2 104.2 109.5
CD CG HG3 100.2 109.5
CG CD CE 112.2 109.5
CG CD HD2 108.6 109.5
CG CD HD3 107.9 109.4
HG2 CG HG3 124.1 109.5
CE CD HD2 108.6 109.5
CE CD HD3 107.9 109.5
CD CE NZ 113.0 109.5
CD CE HE2 108.3 109.5
CD CE HE3 107.5 109.4
HD2 CD HD3 111.6 109.5
NZ CE HE2 108.3 109.5
NZ CE HE3 107.5 109.5
CE NZ HZ1 109.5 109.5
CE NZ HZ2 109.4 109.4
CE NZ HZ3 109.4 109.5
HE2 CE HE3 112.3 109.5
HZ1 NZ HZ2 109.5 109.5
HZ1 NZ HZ3 109.4 109.5
HZ2 NZ HZ3 109.5 109.4
CA1 N1 H1 118.0 120.0
N1 CA1 C3 104.5 109.5
N1 CA1 CB1 120.1 109.5
N1 CA1 HA1 105.6 109.5
C N1 CA1 124.1 120.0
C N1 H1 117.9 120.0
C3 CA1 CB1 108.8 109.4
C3 CA1 HA1 117.6 109.4
CA1 C3 O2 116.1 120.0
CA1 C3 N2 113.8 120.0
CB1 CA1 HA1 101.0 109.5
CA1 CB1 HB1 109.5 109.4
CA1 CB1 HB21 109.5 109.5
CA1 CB1 HB31 109.5 109.4
O2 C3 N2 122.1 120.0
HB1 CB1 HB21 109.5 109.5
HB1 CB1 HB31 109.4 109.5
HB21 CB1 HB31 109.5 109.5
C11 N2 HN2 113.8 120.0
N2 C11 C21 127.4 120.1
N2 C11 C6 120.6 120.1
C3 N2 C11 132.3 120.0
C3 N2 HN2 113.8 120.0
C21 C11 C6 111.9 119.9
C11 C21 C31 124.2 120.0
C11 C21 H2 117.9 120.0
C11 C6 C5 125.2 119.9
C11 C6 H6 117.4 120.0
C31 C21 H2 117.9 120.0
C21 C31 C4 122.6 120.0
C21 C31 H3 118.7 120.0
C4 C31 H3 118.7 120.0
C31 C4 C5 115.6 120.2
C31 C4 C7 115.6 119.9
C5 C4 C7 128.6 120.0
C4 C5 C6 120.0 120.0
C4 C5 H5 120.0 119.9
C4 C7 F11 117.3 109.5
C4 C7 F21 121.6 109.5
C4 C7 F31 105.1 109.5
C6 C5 H5 120.0 120.0
C5 C6 H6 117.4 120.0
F11 C7 F21 95.1 109.4
F11 C7 F31 113.6 109.5
F21 C7 F31 103.6 109.5

Torsion Angles for 2Z5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O C1 C2 N 173.3 180.3
F1 C2 C1 F2 236.9 239.9
F1 C2 C1 F3 101.6 120.0
F2 C2 C1 F3 224.7 240.0
C2 C1 N CA 147.3 180.0
C2 C1 N H 327.3 360.0
O C1 C2 F1 66.6 360.0
O C1 C2 F2 189.7 120.0
O C1 C2 F3 325.0 240.0
C2 C1 O N 185.5 179.7
O C1 N CA 333.6 359.7
O C1 N H 153.7 179.7
F1 C2 C1 O 66.6 360.0
C1 C2 F1 F2 134.3 120.0
C1 C2 F1 F3 253.3 240.0
F1 C2 C1 N 253.4 179.7
F2 C2 F1 F3 119.0 120.0
F2 C2 C1 O 189.7 120.0
C1 C2 F2 F1 237.1 240.0
C1 C2 F2 F3 131.0 120.0
F2 C2 C1 N 16.5 299.7
F1 C2 F2 F3 253.9 240.0
F3 C2 C1 O 325.0 240.0
C1 C2 F3 F1 108.1 120.0
C1 C2 F3 F2 219.7 240.0
F3 C2 C1 N 151.8 59.7
F1 C2 F3 F2 111.6 120.1
C1 N CA H 180.0 180.0
C CA N CB 122.6 120.0
C CA N HA 243.8 240.0
N CA C O1 312.4 340.0
N CA C N1 130.3 160.0
CB CA N HA 121.2 120.0
N CA CB CG 208.1 295.0
N CA CB HB2 328.1 55.0
N CA CB HB3 87.5 175.0
H N CA C 145.7 240.0
H N CA CB 23.1 120.0
H N CA HA 261.9 360.0
C1 N H CA 180.0 180.0
C CA N H 145.7 240.0
N CA C CB 240.6 240.0
N CA C HA 119.6 120.0
C1 N CA C 325.7 60.0
CB CA C HA 239.0 240.0
C CA CB CG 84.2 175.0
C CA CB HB2 204.2 295.0
C CA CB HB3 323.6 55.1
O1 C CA N1 182.0 180.0
CA C N1 CA1 172.7 180.0
CA C N1 H1 352.7 359.9
CB CA N H 23.1 120.0
N CA CB C 123.9 120.0
N CA CB HA 240.2 240.0
C1 N CA CB 203.2 300.0
C CA CB HA 116.3 120.0
CB CA C O1 71.7 100.0
CB CA C N1 249.7 280.0
CG CB CA HB2 240.0 240.0
CG CB CA HB3 120.6 120.0
CA CB CG CD 193.9 180.0
CA CB CG HG2 313.9 300.0
CA CB CG HG3 83.1 60.0
HB2 CB CA HB3 240.6 240.0
HA CA N H 261.9 360.0
N CA HA C 238.0 240.1
N CA HA CB 117.4 120.0
C1 N CA HA 81.9 180.0
C CA HA CB 239.4 240.0
HA CA C O1 192.8 220.0
HA CA C N1 10.7 40.0
HA CA CB CG 328.0 55.0
HA CA CB HB2 88.0 175.0
HA CA CB HB3 207.4 295.0
O1 C CA CB 71.7 100.0
O1 C CA HA 192.8 220.0
CA C O1 N1 178.1 180.0
O1 C N1 CA1 350.6 0.0
O1 C N1 H1 170.6 180.0
CG CB CA HA 328.0 55.0
CA CB CG HB2 120.0 120.0
CA CB CG HB3 239.4 240.0
HB2 CB CG HB3 119.4 120.0
CD CG CB HG2 240.0 240.0
CD CG CB HG3 110.8 120.0
CB CG CD CE 159.0 180.0
CB CG CD HD2 279.0 300.0
CB CG CD HD3 40.2 60.0
HG2 CG CB HG3 230.8 240.0
HB2 CB CA HA 88.0 175.0
CA CB HB2 CG 241.2 240.0
CA CB HB2 HB3 120.6 120.0
CG CB HB2 HB3 239.4 240.1
HB2 CB CG CD 73.9 60.0
HB2 CB CG HG2 193.9 180.0
HB2 CB CG HG3 323.1 300.0
HB3 CB CA HA 207.4 295.0
CA CB HB3 CG 119.2 120.0
CA CB HB3 HB2 239.6 240.0
CG CB HB3 HB2 120.4 120.0
HB3 CB CG CD 314.5 300.0
HB3 CB CG HG2 74.5 60.0
HB3 CB CG HG3 203.7 180.0
CD CG CB HB2 73.9 60.0
CD CG CB HB3 314.5 300.0
CB CG CD HG2 120.0 120.0
CB CG CD HG3 249.2 240.0
HG2 CG CD HG3 129.2 120.0
CE CD CG HD2 240.0 240.0
CE CD CG HD3 118.8 120.0
CG CD CE NZ 113.4 180.0
CG CD CE HE2 233.4 300.0
CG CD CE HE3 354.9 60.0
HD2 CD CG HD3 238.8 240.0
HG2 CG CB HB2 193.9 180.0
HG2 CG CB HB3 74.5 60.0
CB CG HG2 CD 225.9 240.0
CB CG HG2 HG3 112.9 119.9
CD CG HG2 HG3 247.0 240.0
HG2 CG CD CE 39.0 60.0
HG2 CG CD HD2 159.0 180.0
HG2 CG CD HD3 280.2 300.0
HG3 CG CB HB2 323.1 300.0
HG3 CG CB HB3 203.7 180.0
CB CG HG3 CD 130.2 120.0
CB CG HG3 HG2 245.1 240.0
CD CG HG3 HG2 114.9 120.0
HG3 CG CD CE 269.8 300.0
HG3 CG CD HD2 29.8 60.0
HG3 CG CD HD3 151.0 180.0
CE CD CG HG2 39.0 60.0
CE CD CG HG3 269.8 300.0
CG CD CE HD2 120.0 120.0
CG CD CE HD3 241.2 240.0
HD2 CD CE HD3 121.2 120.0
NZ CE CD HE2 240.0 240.0
NZ CE CD HE3 118.5 120.0
CD CE NZ HZ1 222.8 180.0
CD CE NZ HZ2 342.8 300.1
CD CE NZ HZ3 102.8 60.0
HE2 CE CD HE3 238.4 240.0
HD2 CD CG HG2 159.0 180.0
HD2 CD CG HG3 29.8 60.0
CG CD HD2 CE 237.7 240.0
CG CD HD2 HD3 118.9 120.0
CE CD HD2 HD3 241.2 240.0
HD2 CD CE NZ 353.4 60.0
HD2 CD CE HE2 113.4 180.0
HD2 CD CE HE3 234.9 300.0
HD3 CD CG HG2 280.2 300.0
HD3 CD CG HG3 151.0 180.0
CG CD HD3 CE 121.5 120.0
CG CD HD3 HD2 240.8 240.0
CE CD HD3 HD2 119.2 120.0
HD3 CD CE NZ 232.2 300.0
HD3 CD CE HE2 352.2 60.0
HD3 CD CE HE3 113.8 180.0
NZ CE CD HD2 353.4 60.0
NZ CE CD HD3 232.2 300.0
CD CE NZ HE2 120.0 120.0
CD CE NZ HE3 241.5 240.1
HE2 CE NZ HE3 121.5 120.1
HZ1 NZ CE HZ2 240.0 239.9
HZ1 NZ CE HZ3 120.0 120.0
HZ2 NZ CE HZ3 240.0 240.1
HE2 CE CD HD2 113.4 180.0
HE2 CE CD HD3 352.2 60.0
CD CE HE2 NZ 237.1 240.0
CD CE HE2 HE3 118.6 119.9
NZ CE HE2 HE3 241.5 239.9
HE2 CE NZ HZ1 102.8 60.0
HE2 CE NZ HZ2 222.8 180.1
HE2 CE NZ HZ3 342.9 300.0
HE3 CE CD HD2 234.9 300.0
HE3 CE CD HD3 113.8 180.0
CD CE HE3 NZ 121.9 120.0
CD CE HE3 HE2 241.0 240.0
NZ CE HE3 HE2 119.0 120.0
HE3 CE NZ HZ1 341.3 300.0
HE3 CE NZ HZ2 101.3 60.0
HE3 CE NZ HZ3 221.3 179.9
HZ1 NZ CE HE2 102.8 60.0
HZ1 NZ CE HE3 341.3 300.0
CE NZ HZ1 HZ2 120.0 120.0
CE NZ HZ1 HZ3 240.0 240.0
HZ2 NZ HZ1 HZ3 120.1 120.0
HZ2 NZ CE HE2 222.8 180.1
HZ2 NZ CE HE3 101.3 60.0
CE NZ HZ2 HZ1 240.0 240.0
CE NZ HZ2 HZ3 120.0 119.9
HZ1 NZ HZ2 HZ3 240.0 239.9
HZ3 NZ CE HE2 342.9 300.0
HZ3 NZ CE HE3 221.3 179.9
CE NZ HZ3 HZ1 120.0 120.0
CE NZ HZ3 HZ2 240.0 240.1
HZ1 NZ HZ3 HZ2 120.0 120.1
C N1 CA1 H1 180.0 179.9
C3 CA1 N1 CB1 122.3 120.0
C3 CA1 N1 HA1 235.3 240.0
N1 CA1 C3 O2 299.6 0.0
N1 CA1 C3 N2 89.3 180.0
CB1 CA1 N1 HA1 113.0 120.0
N1 CA1 CB1 HB1 183.1 60.0
N1 CA1 CB1 HB21 303.1 180.0
N1 CA1 CB1 HB31 63.1 300.0
H1 N1 CA1 C3 101.2 25.1
H1 N1 CA1 CB1 338.9 265.1
H1 N1 CA1 HA1 225.9 145.0
C N1 H1 CA1 180.0 180.1
C3 CA1 N1 H1 101.2 25.1
N1 CA1 C3 CB1 230.6 240.0
N1 CA1 C3 HA1 116.7 120.0
C N1 CA1 C3 281.2 205.0
CB1 CA1 C3 HA1 246.1 240.1
C3 CA1 CB1 HB1 62.9 300.0
C3 CA1 CB1 HB21 183.0 60.0
C3 CA1 CB1 HB31 303.0 180.0
O2 C3 CA1 N2 210.3 180.1
CA1 C3 N2 C11 180.5 175.4
CA1 C3 N2 HN2 0.5 355.4
CB1 CA1 N1 H1 338.9 265.1
N1 CA1 CB1 C3 120.2 120.0
N1 CA1 CB1 HA1 244.6 240.0
C N1 CA1 CB1 158.9 85.0
C3 CA1 CB1 HA1 124.4 119.9
CB1 CA1 C3 O2 69.0 120.1
CB1 CA1 C3 N2 218.7 300.0
HB1 CB1 CA1 HB21 240.0 240.0
HB1 CB1 CA1 HB31 120.0 120.0
HB21 CB1 CA1 HB31 240.0 240.0
HA1 CA1 N1 H1 225.9 145.0
N1 CA1 HA1 C3 243.9 240.0
N1 CA1 HA1 CB1 125.8 120.1
C N1 CA1 HA1 45.9 325.0
C3 CA1 HA1 CB1 241.8 240.1
HA1 CA1 C3 O2 182.9 240.0
HA1 CA1 C3 N2 332.7 59.9
HA1 CA1 CB1 HB1 298.5 180.1
HA1 CA1 CB1 HB21 58.6 300.0
HA1 CA1 CB1 HB31 178.6 60.1
O2 C3 CA1 CB1 69.0 120.1
O2 C3 CA1 HA1 182.9 240.0
CA1 C3 O2 N2 147.0 179.9
O2 C3 N2 C11 328.2 355.4
O2 C3 N2 HN2 148.2 175.3
HB1 CB1 CA1 HA1 298.5 180.1
CA1 CB1 HB1 HB21 120.0 120.0
CA1 CB1 HB1 HB31 240.0 240.0
HB21 CB1 HB1 HB31 120.0 120.0
HB21 CB1 CA1 HA1 58.6 300.0
CA1 CB1 HB21 HB1 240.0 240.0
CA1 CB1 HB21 HB31 120.0 120.0
HB1 CB1 HB21 HB31 240.0 240.0
HB31 CB1 CA1 HA1 178.6 60.1
CA1 CB1 HB31 HB1 120.0 120.0
CA1 CB1 HB31 HB21 240.0 240.0
HB1 CB1 HB31 HB21 120.0 120.0
C3 N2 C11 HN2 180.0 180.0
C21 C11 N2 C6 183.5 180.2
N2 C11 C21 C31 184.1 180.0
N2 C11 C21 H2 4.1 360.0
N2 C11 C6 C5 179.7 179.6
N2 C11 C6 H6 359.7 360.0
HN2 N2 C11 C21 204.4 215.1
HN2 N2 C11 C6 20.9 34.8
C3 N2 HN2 C11 180.0 180.0
C21 C11 N2 HN2 204.4 215.1
N2 C11 C21 C6 176.8 179.8
C3 N2 C11 C21 24.4 35.1
C21 C11 C6 C5 356.7 359.4
C21 C11 C6 H6 176.7 179.7
C31 C21 C11 H2 180.0 180.1
C11 C21 C31 C4 354.0 0.0
C11 C21 C31 H3 174.0 180.0
C6 C11 N2 HN2 20.9 34.8
N2 C11 C6 C21 183.0 180.2
C3 N2 C11 C6 200.9 214.8
C6 C11 C21 C31 7.3 0.3
C6 C11 C21 H2 187.3 180.2
C4 C5 C6 C11 357.6 0.7
C11 C6 C5 H5 177.6 180.3
C5 C6 C11 H6 180.0 179.6
C31 C21 C11 C6 7.3 0.3
C11 C21 C31 H2 180.0 179.9
C4 C31 C21 H3 180.0 180.1
C21 C31 C4 C5 359.6 360.0
C21 C31 C4 C7 184.3 180.0
H2 C21 C11 C6 187.3 180.2
C11 C21 H2 C31 180.0 180.1
H2 C21 C31 C4 174.0 180.1
H2 C21 C31 H3 354.0 0.1
C4 C31 C21 H2 174.0 180.1
C21 C31 C4 H3 180.0 179.9
C5 C4 C31 C7 175.3 180.0
C31 C4 C5 C6 4.2 359.7
C31 C4 C5 H5 184.1 180.0
C31 C4 C7 F11 6.2 90.0
C31 C4 C7 F21 250.3 210.0
C31 C4 C7 F31 133.4 330.0
H3 C31 C21 H2 354.0 0.1
C21 C31 H3 C4 180.0 180.1
H3 C31 C4 C5 179.6 180.0
H3 C31 C4 C7 4.3 0.1
C11 C6 C5 C4 357.6 0.7
C5 C4 C31 H3 179.6 180.0
C31 C4 C5 C7 185.4 180.0
C5 C4 C7 F11 191.6 270.0
C5 C4 C7 F21 75.7 30.0
C5 C4 C7 F31 318.8 150.0
C6 C5 C4 H5 180.0 179.6
C4 C5 C6 H6 177.6 180.3
C7 C4 C31 H3 4.3 0.1
C31 C4 C7 C5 174.6 180.0
C7 C4 C5 C6 178.7 179.7
C7 C4 C5 H5 358.7 0.0
F11 C7 C4 F21 115.8 240.1
F11 C7 C4 F31 232.8 120.0
F21 C7 C4 F31 116.9 240.0
C11 C6 C5 H6 180.0 180.4
C6 C5 C4 C7 178.7 179.7
C4 C5 C6 H5 180.0 180.4
H5 C5 C4 C7 358.7 0.0
C4 C5 H5 C6 180.0 179.6
H5 C5 C6 H6 357.6 359.9
C11 C6 H6 C5 180.0 179.6
H6 C6 C5 H5 357.6 359.9
C4 C7 F11 F21 230.3 120.0
C4 C7 F11 F31 123.0 240.0
F21 C7 F11 F31 252.7 120.0
C4 C7 F21 F11 126.6 240.0
C4 C7 F21 F31 242.4 120.0
F11 C7 F21 F31 115.8 240.0
C4 C7 F31 F11 230.5 120.0
C4 C7 F31 F21 128.6 240.0
F11 C7 F31 F21 258.1 120.0
C2 C1 N O 173.7 180.3
N C1 C2 F1 253.4 179.7
N C1 C2 F2 16.5 299.7
N C1 C2 F3 151.8 59.7
CA N C1 H 180.0 180.0
N1 C CA CB 249.7 280.0
N1 C CA HA 10.7 40.0
CA C N1 O1 182.1 180.0
CA1 N1 C H1 180.0 180.1
N2 C3 CA1 CB1 218.7 300.0
N2 C3 CA1 HA1 332.7 59.9
CA1 C3 N2 O2 212.3 180.1
C11 N2 C3 HN2 180.0 180.0