PDB Chemical Component 2YT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2YT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C5 C6 1.387 1.383
C5 C4 1.396 1.383
C6 C7 1.389 1.382
C3 C4 1.517 1.507
C3 C2 1.538 1.530
C7 C8 1.392 1.381
C4 C9 1.392 1.383
C8 C9 1.390 1.383
N1 C2 1.462 1.469
N28 C27 1.365 1.304
C2 C10 1.506 1.507
N29 C27 1.317 1.374
C27 N26 1.370 1.375
C10 N11 1.333 1.348
C10 O34 1.245 1.213
O33 C20 1.219 1.213
N11 C12 1.469 1.465
C19 C18 1.390 1.383
C19 C14 1.397 1.382
N26 C25 1.471 1.464
C13 C12 1.519 1.529
C13 C14 1.518 1.507
C20 C12 1.507 1.507
C20 N21 1.361 1.348
C25 C24 1.533 1.530
C18 C17 1.389 1.382
C14 C15 1.397 1.382
N21 C22 1.471 1.465
C22 C30 1.543 1.530
C22 C23 1.553 1.530
C32 C30 1.546 1.530
C17 C16 1.390 1.382
C24 C23 1.532 1.530
C15 C16 1.386 1.383
O31 C30 1.408 1.429
C32 CL1 1.514 1.803
C5 H1 1.080 1.080
C6 H2 1.080 1.080
C7 H3 1.080 1.081
C8 H4 1.080 1.080
C9 H5 1.080 1.080
C12 H6 1.100 1.091
C13 H7 1.100 1.090
C13 H8 1.100 1.091
N1 H9 1.000 1.009
N1 H10 1.000 1.010
C3 H12 1.100 1.090
C3 H13 1.100 1.089
C2 H14 1.100 1.090
N11 H15 1.000 0.970
C15 H16 1.080 1.080
C16 H17 1.080 1.080
C17 H18 1.080 1.080
C18 H19 1.080 1.080
C19 H20 1.080 1.080
N21 H21 1.000 0.970
C22 H22 1.100 1.091
C23 H23 1.100 1.090
C23 H24 1.100 1.090
C24 H25 1.100 1.090
C24 H26 1.100 1.090
C25 H27 1.100 1.090
C25 H28 1.100 1.090
N26 H29 1.000 0.970
N28 H30 1.000 0.970
N29 H31 1.000 0.970
N29 H32 1.000 0.971
C30 H33 1.100 1.090
O31 H34 0.950 0.967
C32 H35 1.100 1.090
C32 H36 1.100 1.090

Bond Angles for 2YT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5 C6 C7 119.4 120.0
C6 C5 H1 119.7 120.0
C5 C6 H2 120.3 120.0
C5 C4 C9 119.6 119.9
C6 C7 C8 120.3 120.0
C7 C6 H2 120.3 120.0
C6 C7 H3 119.9 120.0
C3 C4 C9 121.1 120.0
C4 C3 H12 106.0 109.4
C4 C3 H13 105.9 109.5
C3 C2 H14 109.1 109.4
C7 C8 H4 119.9 120.1
C4 C9 H5 120.1 120.0
C8 C9 H5 120.1 120.0
N1 C2 C10 107.1 109.5
C2 N1 H9 109.5 111.0
C2 N1 H10 109.5 111.0
N1 C2 H14 110.2 109.4
C2 C10 N11 119.5 120.0
C2 C10 O34 118.1 120.0
C10 C2 H14 109.6 109.5
C27 N26 H29 119.1 120.0
O34 C10 N11 122.4 120.0
C10 N11 C12 122.2 120.0
C10 N11 H15 118.9 120.0
O33 C20 N21 120.1 120.0
N11 C12 H6 110.6 109.5
C12 N11 H15 118.9 120.0
C19 C18 C17 120.0 120.0
C19 C18 H19 120.0 120.0
C18 C19 H20 119.3 119.9
C19 C14 C15 117.6 120.0
N26 C25 H27 110.0 109.5
N26 C25 H28 110.0 109.5
C13 C12 H6 109.9 109.5
C13 C14 C15 123.7 120.0
C14 C13 H7 108.2 109.4
C14 C13 H8 108.2 109.4
C20 C12 H6 110.1 109.4
C20 N21 C22 122.8 120.0
C20 N21 H21 118.6 120.0
C25 C24 H25 108.6 109.5
C25 C24 H26 108.6 109.5
C18 C17 C16 119.6 120.0
C18 C17 H18 120.2 120.0
C17 C18 H19 120.0 120.0
C14 C15 C16 121.5 120.0
C14 C15 H16 119.3 120.0
N21 C22 C30 110.3 109.4
N21 C22 C23 110.2 109.5
C22 N21 H21 118.6 120.0
N21 C22 H22 109.9 109.5
C23 C22 C30 108.8 109.5
C30 C22 H22 108.9 109.4
C22 C30 H33 111.5 109.4
C23 C22 H22 108.8 109.5
C22 C23 H23 108.4 109.4
C22 C23 H24 108.4 109.4
C32 C30 H33 111.5 109.5
C17 C16 H17 120.0 120.0
C24 C23 H23 108.4 109.5
C24 C23 H24 108.4 109.5
C16 C15 H16 119.3 120.0
C15 C16 H17 120.0 120.0
O31 C30 H33 113.7 109.5
CL1 C32 H35 107.2 109.5
CL1 C32 H36 107.2 109.5
H7 C13 H8 109.5 109.5
H9 N1 H10 109.5 110.9
H12 C3 H13 109.5 109.5
H23 C23 H24 109.5 109.5
H25 C24 H26 109.5 109.5
H27 C25 H28 109.5 109.5
H31 N29 H32 120.0 119.9
H35 C32 H36 109.5 109.5

Torsion Angles for 2YT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C5 C4 C9 358.2 0.3
C5 C6 C7 C8 359.7 359.8
C7 C6 C5 H2 180.0 180.0
C5 C6 C7 H3 179.7 180.0
C3 C4 C5 C9 182.7 179.7
C5 C4 C3 H12 13.9 150.3
C5 C4 C3 H13 130.1 30.3
C5 C4 C9 H5 181.5 179.7
C7 C6 C5 H1 181.2 180.0
C5 C6 C7 H2 180.0 180.0
C6 C7 C8 H4 180.1 180.3
C5 C4 C3 C9 177.3 180.3
C4 C3 C2 H14 270.2 55.0
C3 C4 C9 H5 358.8 0.0
H12 C3 C4 H13 243.8 120.0
C3 C2 N1 H9 180.0 300.0
C3 C2 N1 H10 300.0 63.9
N1 C2 C3 H14 242.3 240.0
C3 C2 C10 N11 337.2 280.1
C10 C2 C3 H14 124.6 120.0
C8 C7 C6 H2 179.7 179.8
C6 C7 C8 H3 180.0 180.2
C7 C8 C9 H5 179.3 180.0
C9 C4 C3 H12 196.6 330.0
C9 C4 C3 H13 312.8 210.0
C8 C9 C4 H5 180.0 180.0
C4 C9 C8 H5 180.0 180.0
C3 C2 N1 H14 117.0 120.0
N1 C2 C10 N11 221.1 160.0
N1 C2 C10 O34 41.2 339.9
C10 C2 N1 H14 240.8 240.0
H9 N1 C2 H10 240.0 236.1
N28 C27 N26 H29 174.7 180.0
C3 C2 C10 H14 235.6 240.0
C10 C2 N1 H9 303.9 60.1
C10 C2 N1 H10 63.9 184.0
N1 C2 C10 H14 119.5 119.9
O34 C10 C2 N11 180.1 179.9
C2 C10 N11 C12 178.9 180.0
C2 C10 N11 H15 359.0 359.9
N29 C27 N26 H29 355.1 360.0
C27 N26 C25 H27 296.9 60.1
C27 N26 C25 H28 57.6 300.0
C2 C10 N11 O34 180.1 179.9
N11 C10 C2 H14 101.6 40.1
C10 N11 C12 H6 60.1 324.9
C12 N11 C10 H15 180.0 180.1
C2 C10 O34 N11 179.9 180.1
O34 C10 C2 H14 281.6 220.0
O34 C10 N11 C12 358.9 0.1
O34 C10 N11 H15 178.9 180.0
O33 C20 C12 H6 196.9 240.0
O33 C20 N21 C22 0.2 0.1
O33 C20 N21 H21 180.1 180.0
C10 N11 C12 H15 180.0 179.9
C13 C12 N11 H6 121.2 120.1
C20 C12 N11 H6 237.6 240.1
C18 C19 C14 C15 0.4 0.3
C19 C18 C17 C16 359.2 359.8
C19 C18 C17 H18 179.3 180.0
C17 C18 C19 H19 180.0 180.0
C13 C14 C19 C15 178.1 179.7
C19 C14 C13 H7 20.6 150.3
C19 C14 C13 H8 262.1 30.3
C19 C14 C15 C16 359.1 359.7
C19 C14 C15 H16 179.1 179.7
N26 C25 C24 H25 309.3 60.0
N26 C25 C24 H26 68.2 300.0
H27 C25 N26 H28 239.3 120.0
N11 C12 C13 H6 238.4 240.0
C13 C12 N11 H15 1.2 265.0
C20 C12 C13 H6 119.0 120.0
C19 C14 C13 C15 182.0 180.3
C14 C13 C12 H6 33.9 55.0
C13 C14 C15 C16 181.1 180.0
C13 C14 C15 H16 1.1 0.0
H7 C13 C14 H8 118.5 120.0
N11 C12 C20 H6 122.7 119.9
C20 C12 N11 H15 117.7 25.1
C13 C12 C20 H6 241.2 240.0
N21 C20 C12 H6 17.5 60.1
C20 N21 C22 C30 243.7 275.0
C20 N21 C22 C23 123.6 155.0
C22 N21 C20 H21 180.0 180.1
C20 N21 C22 H22 3.8 34.9
C25 C24 C23 H23 180.2 60.0
C25 C24 C23 H24 61.5 299.9
H25 C24 C25 H26 241.0 120.0
C19 C18 C17 H19 180.0 180.0
C17 C18 C19 H20 180.4 180.0
C18 C17 C16 H17 180.3 180.2
C15 C14 C13 H7 198.5 329.9
C15 C14 C13 H8 80.0 210.0
C16 C15 C14 H16 180.0 180.0
C14 C15 C16 H17 180.6 180.0
C20 N21 C22 H21 180.0 179.9
C23 C22 N21 C30 239.9 239.9
C30 C22 N21 H22 239.9 240.1
N21 C22 C30 H33 290.0 299.9
C23 C22 N21 H22 119.8 120.0
N21 C22 C23 H23 70.3 55.0
N21 C22 C23 H24 189.0 175.0
N21 C22 C30 C23 239.1 240.0
C30 C22 N21 H21 63.7 95.1
N21 C22 C30 H22 120.7 120.0
C23 C22 C30 H22 241.6 240.0
C30 C22 C23 H23 309.2 295.0
C30 C22 C23 H24 67.9 55.0
C32 C30 C22 H33 122.2 120.0
O31 C30 C22 H33 235.3 240.1
N21 C22 C23 C30 121.0 120.0
C23 C22 N21 H21 303.6 335.0
N21 C22 C23 H22 239.5 240.0
C30 C22 C23 H22 118.5 120.0
C23 C22 C30 H33 50.9 60.0
C24 C23 C22 H23 239.3 240.0
C24 C23 C22 H24 120.6 120.0
H23 C23 C22 H24 241.3 240.0
C32 C30 C22 H22 291.6 300.0
C22 C30 C32 H33 237.7 240.0
O31 C30 C32 H33 124.2 120.0
C18 C17 C16 H18 180.0 180.2
C16 C17 C18 H19 179.2 179.8
C17 C16 C15 H16 180.6 180.1
C15 C16 C17 H17 180.0 179.9
C24 C23 C22 C30 188.6 175.0
C24 C23 C22 H22 70.1 55.0
C22 C23 C24 H23 120.6 120.0
C22 C23 C24 H24 239.4 240.1
H23 C23 C24 H24 118.7 120.1
C18 C17 C16 C15 0.3 0.2
C14 C15 C16 H16 180.0 180.0
C17 C16 C15 H17 180.0 180.1
O31 C30 C22 H22 44.7 60.0
C22 C30 O31 H33 123.3 119.9
C32 C30 O31 H33 237.2 240.0
CL1 C32 C30 H33 25.8 305.0
H35 C32 CL1 H36 117.5 120.1
H1 C5 C6 C7 181.2 180.0
H1 C5 C6 H2 1.2 0.1
H1 C5 C4 C9 178.2 180.2
C5 C6 H2 C7 180.0 180.0
H2 C6 C5 H1 1.2 0.1
H2 C6 C7 C8 179.7 179.8
H2 C6 C7 H3 359.7 360.0
C6 C7 H3 C8 180.0 179.8
H3 C7 C6 H2 359.7 360.0
H3 C7 C8 H4 0.1 0.0
H4 C8 C9 H5 359.3 360.0
H6 C12 N11 H15 240.1 145.0
H7 C13 C12 H6 154.6 175.0
H7 C13 C14 C15 198.5 329.9
C14 C13 H7 H8 242.3 240.1
H8 C13 C12 H6 273.2 295.0
H8 C13 C14 C15 80.0 210.0
C14 C13 H8 H7 117.7 119.9
H9 N1 C2 C10 303.9 60.1
C2 N1 H9 H10 120.0 123.9
H9 N1 C2 H14 63.0 180.1
H10 N1 C2 C10 63.9 184.0
C2 N1 H10 H9 240.0 236.1
H10 N1 C2 H14 183.0 303.9
H12 C3 C4 C9 196.6 330.0
C4 C3 H12 H13 113.8 240.0
H12 C3 C2 H14 148.3 175.0
H13 C3 C4 C9 312.8 210.0
C4 C3 H13 H12 246.2 120.0
H13 C3 C2 H14 32.1 294.9
N1 C2 H14 C10 242.4 240.0
H14 C2 N1 H9 63.0 180.1
H14 C2 N1 H10 183.0 303.9
H14 C2 C10 N11 101.6 40.1
H14 C2 C10 O34 281.6 220.0
C10 N11 H15 C12 180.0 180.1
H15 N11 C12 H6 240.1 145.0
C14 C15 H16 C16 180.0 180.0
H16 C15 C16 H17 0.6 0.0
H17 C16 C15 H16 0.6 0.0
C18 C17 H18 C16 180.0 179.8
H18 C17 C18 H19 359.2 359.9
H18 C17 C16 H17 0.3 0.1
C19 C18 H19 C17 180.0 180.0
H19 C18 C19 H20 0.4 0.0
H19 C18 C17 C16 179.2 179.8
H19 C18 C17 H18 359.2 359.9
H20 C19 C18 C17 180.4 180.0
H20 C19 C18 H19 0.4 0.0
H20 C19 C14 C15 180.4 180.3
C20 N21 H21 C22 180.0 180.1
H21 N21 C22 C30 63.7 95.1
H21 N21 C22 C23 303.6 335.0
H21 N21 C22 H22 183.8 215.0
N21 C22 H22 C30 239.1 240.1
N21 C22 H22 C23 120.7 120.0
H22 C22 N21 H21 183.8 215.0
C23 C22 H22 C30 118.4 120.0
H22 C22 C30 H33 169.3 180.0
H22 C22 C23 H23 190.8 175.0
H22 C22 C23 H24 309.5 295.0
H23 C23 C22 C30 309.2 295.0
H23 C23 C22 H22 190.8 175.0
C22 C23 H23 H24 118.1 119.9
C24 C23 H23 H24 242.0 239.9
H24 C23 C22 C30 67.9 55.0
H24 C23 C22 H22 309.5 295.0
C22 C23 H24 H23 241.9 240.0
C24 C23 H24 H23 118.1 120.1
C25 C24 H25 H26 118.4 240.0
H25 C24 C23 H23 59.7 180.1
H25 C24 C23 H24 301.0 60.0
C25 C24 H26 H25 241.6 120.0
H26 C24 C23 H23 300.7 300.0
H26 C24 C23 H24 182.0 179.9
N26 C25 H27 H28 121.0 239.9
H27 C25 C24 H25 189.6 180.0
H27 C25 C24 H26 308.6 60.0
N26 C25 H28 H27 239.0 120.1
H28 C25 C24 H25 68.9 299.9
H28 C25 C24 H26 187.9 179.9
H29 N26 C25 H27 116.9 240.1
H29 N26 C25 H28 237.5 120.0
H33 C30 C22 H22 169.3 180.0
H34 O31 C30 H33 56.7 180.1
H35 C32 C30 H33 147.1 65.0
CL1 C32 H35 H36 244.0 239.9
H36 C32 C30 H33 264.6 185.0
CL1 C32 H36 H35 116.0 120.1