PDB Chemical Component 2YR

Ideal Model

Chemical Description

Name 2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate)
Formula C11 H18 N3 O7 P S
Formal charge 0
Molecular weight 367.315 g/mol
Component type NON-POLYMER

Chemical features

Atom count 41
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms H7 H14 OP3 H20
Bond count 42
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-oxidanyl-5-[2-oxidanylidene-4-(2-sulfanylethylamino)pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=NC2=O)NCCS
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=NC2=O)NCCS
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)NCCS)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H18N3O7PS/c15-7-5-10(21-8(7)6-20-22(17,18)19)14-3-1-9(12-2-4-23)13-11(14)16/h1,3,7-8,10,15,23H,2,4-6H2,(H,12,13,16)(H2,17,18,19)/t7-,8+,10+/m0/s1
InChIKey descriptor OJZURBTUERORPR-QXFUBDJGSA-N

Status Information

Last modified 2014-05-16
Created 2014-04-28
Release status REL
Model PDB code 4MGT
Processing site RCSB