PDB Chemical Component 2YP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2YP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
OAM	CAL	1.239	1.209
CAL	O	1.270	1.342
CAL	CAI	1.533	1.507
CAJ	CAI	1.521	1.530
CAI	OAH	1.438	1.429
OAH	CA3	1.434	1.429
O6	C6	1.429	1.430
OAG	CAE	1.225	1.212
CA3	CA2	1.533	1.532
CA3	CA4	1.526	1.533
C6	C5	1.522	1.529
CAE	NAD	1.319	1.348
CAE	CAF	1.501	1.507
CA2	NAD	1.456	1.465
CA2	CA1	1.532	1.538
CA4	O1	1.435	1.429
CA4	CA5	1.530	1.538
O5	C5	1.437	1.429
O5	C1	1.411	1.429
O1	C1	1.382	1.429
C5	C4	1.524	1.531
OA6	CA6	1.439	1.438
OA6	CA1	1.424	1.439
CA6	CA5	1.522	1.547
C1	C2	1.518	1.531
CA1	OA5	1.403	1.444
C4	O4	1.426	1.429
C4	C3	1.525	1.532
CA5	OA5	1.450	1.448
OAC	CAB	1.240	1.213
C2	C3	1.530	1.532
C2	N2	1.453	1.466
C3	O3	1.415	1.429
CAB	N2	1.341	1.348
CAB	CAA	1.495	1.507
C1	H1	1.100	1.089
C2	H2	1.099	1.089
C3	H3	1.100	1.090
O3	H4	0.950	0.967
C4	H5	1.100	1.090
CAA	H6	1.100	1.090
CAA	H7	1.100	1.089
CAA	H8	1.100	1.090
N2	H9	1.000	0.970
O4	H10	0.950	0.967
C5	H11	1.100	1.090
C6	H12	1.100	1.090
C6	H13	1.100	1.090
O6	H14	0.950	0.967
CA4	H15	1.100	1.090
CA3	H16	1.100	1.090
CAI	H17	1.100	1.090
CAJ	H18	1.100	1.091
CAJ	H19	1.100	1.090
CAJ	H20	1.100	1.090
O	H21	0.950	0.967
CA5	H22	1.100	1.089
CA6	H23	1.100	1.089
CA6	H24	1.100	1.090
CA1	H25	1.100	1.090
CA2	H26	1.100	1.090
NAD	H27	1.000	0.970
CAF	H28	1.100	1.090
CAF	H29	1.100	1.090
CAF	H30	1.100	1.090

Bond Angles for 2YP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
OAM	CAL	O	125.9	120.0
CAL	O	H21	109.5	117.0
CAL	CAI	H17	107.6	109.5
CAJ	CAI	H17	107.7	109.5
OAH	CA3	CA2	109.1	109.5
OAH	CA3	H16	109.2	109.5
O6	C6	H12	108.6	109.4
O6	C6	H13	108.6	109.4
OAG	CAE	CAF	122.3	120.0
CA3	CA2	NAD	111.1	109.6
CA3	CA2	CA1	113.0	108.8
CA2	CA3	H16	108.0	109.5
CA3	CA2	H26	107.1	109.6
CA3	CA4	CA5	112.4	108.6
CA3	CA4	H15	109.3	109.8
C6	C5	H11	108.6	109.5
CAE	NAD	H27	118.1	120.0
CAE	CAF	H28	109.5	109.5
CAE	CAF	H29	109.4	109.5
CAE	CAF	H30	109.5	109.5
NAD	CA2	H26	108.1	109.6
CA2	NAD	H27	118.2	120.0
CA2	CA1	H25	108.7	112.0
CA4	CA5	OA5	109.1	107.2
CA5	CA4	H15	109.2	109.6
CA4	CA5	H22	110.2	112.6
O5	C5	H11	109.8	109.5
O5	C1	H1	110.7	109.5
O1	C1	C2	106.7	109.5
O1	C1	H1	111.1	109.5
C5	C4	H5	109.2	109.6
OA6	CA6	H23	111.0	110.4
OA6	CA6	H24	111.0	110.4
OA6	CA1	H25	110.2	111.4
CA6	CA5	H22	110.3	113.3
C1	C2	C3	110.9	109.2
C1	C2	N2	110.4	109.5
C2	C1	H1	109.2	109.5
C1	C2	H2	108.1	109.5
O4	C4	H5	110.6	109.5
C4	O4	H10	109.5	114.0
C4	C3	H3	108.7	109.6
OA5	CA5	H22	111.3	112.8
OAC	CAB	N2	122.7	120.0
OAC	CAB	CAA	121.8	120.0
C3	C2	N2	110.5	109.5
C2	C3	O3	108.7	109.6
C3	C2	H2	108.0	109.5
C2	C3	H3	108.6	109.6
C2	N2	CAB	124.7	120.0
N2	C2	H2	109.0	109.6
C2	N2	H9	117.7	120.0
O3	C3	H3	110.2	109.6
C3	O3	H4	109.5	114.0
CAA	CAB	N2	115.5	120.0
CAB	N2	H9	117.7	120.0
CAB	CAA	H6	109.5	109.4
CAB	CAA	H7	109.4	109.5
CAB	CAA	H8	109.5	109.4
H6	CAA	H7	109.5	109.5
H6	CAA	H8	109.5	109.5
H7	CAA	H8	109.5	109.5
H12	C6	H13	109.5	109.5
H18	CAJ	H19	109.5	109.4
H18	CAJ	H20	109.5	109.4
H19	CAJ	H20	109.5	109.5
H23	CA6	H24	109.5	110.3
H28	CAF	H29	109.5	109.4
H28	CAF	H30	109.5	109.5
H29	CAF	H30	109.5	109.5

Torsion Angles for 2YP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
OAM	CAL	O	H21	360.0	360.0
OAM	CAL	CAI	H17	276.7	125.0
O	CAL	CAI	H17	96.6	305.0
CAJ	CAI	CAL	H17	119.1	120.0
CAL	CAI	CAJ	H17	241.0	240.0
CAI	OAH	CA3	CA2	236.5	270.1
CAI	OAH	CA3	H16	354.3	30.2
OAH	CA3	CA2	NAD	143.8	171.8
OAH	CA3	CA2	CA1	268.2	291.6
CA2	CA3	OAH	H16	242.2	239.9
OAH	CA3	CA2	H26	26.0	51.5
OAH	CA3	CA4	CA5	90.8	68.0
OAH	CA3	CA4	H15	329.4	308.1
O6	C6	C5	H11	180.7	305.0
H12	C6	O6	H13	241.0	120.0
OAG	CAE	NAD	H27	180.3	185.2
OAG	CAE	CAF	H28	360.0	185.0
OAG	CAE	CAF	H29	120.0	305.0
OAG	CAE	CAF	H30	240.0	65.0
OAH	CA3	CA2	H16	118.6	120.1
CA2	CA3	CA4	CA5	329.1	308.0
CA2	CA3	CA4	H15	207.6	188.2
NAD	CA2	CA3	H26	117.9	120.3
CA3	CA2	NAD	H27	53.3	26.9
CA3	CA2	CA1	H25	184.4	173.3
CA3	CA4	CA5	OA5	55.2	64.7
CA5	CA4	CA3	H15	121.4	119.8
CA3	CA4	CA5	H22	177.6	189.3
O5	C5	C6	H11	118.7	120.1
C6	C5	C4	H5	303.6	302.3
CAE	NAD	CA2	H26	350.6	327.2
CA2	NAD	CAE	H27	180.0	180.0
CAF	CAE	NAD	H27	0.6	5.1
H28	CAF	CAE	H29	240.0	240.0
H28	CAF	CAE	H30	120.0	120.0
H29	CAF	CAE	H30	240.0	240.0
CA3	CA2	NAD	CA1	126.0	119.3
NAD	CA2	CA3	H16	25.2	51.7
CA3	CA2	NAD	H26	242.7	239.7
CAE	NAD	CA2	H27	180.0	180.0
NAD	CA2	CA1	H25	309.4	293.0
CA3	CA2	CA1	NAD	235.1	240.2
CA1	CA2	CA3	H16	149.6	171.5
CA3	CA2	CA1	H26	117.7	119.8
OA6	CA1	CA2	H25	238.0	236.8
CA4	O1	C1	H1	46.0	48.5
CA3	CA4	CA5	H15	238.5	240.0
CA6	CA5	CA4	H22	124.5	125.7
OA5	CA5	CA4	H22	237.5	235.4
C6	C5	O5	H11	242.1	239.9
C5	O5	C1	H1	55.9	58.8
O5	C5	C4	H5	63.3	62.3
O1	C1	O5	H1	122.2	120.0
C2	C1	O5	H1	239.0	240.0
O5	C1	C2	H2	295.9	297.7
O5	C1	O1	H1	238.1	240.0
O1	C1	C2	C3	172.0	177.6
O1	C1	C2	N2	294.8	297.5
C2	C1	O1	H1	118.9	120.0
O1	C1	C2	H2	53.8	57.7
O4	C4	C5	H5	120.6	120.2
C5	C4	O4	H10	180.0	299.7
C5	C4	C3	H3	288.4	297.1
OA6	CA6	CA5	H22	214.1	215.3
H23	CA6	OA6	H24	238.1	122.2
CA3	CA2	CA1	OA6	62.4	50.0
CA2	CA1	OA6	H25	121.2	123.6
CA1	OA6	CA6	H23	120.2	239.5
CA1	OA6	CA6	H24	242.1	117.3
CA6	CA5	CA4	H15	63.6	74.9
CA4	CA5	CA6	H22	235.6	234.8
OA5	CA5	CA6	H22	118.3	121.9
O5	C1	C2	H1	121.9	120.0
O1	C1	C2	H1	239.8	240.0
C3	C2	C1	N2	237.2	240.2
C1	C2	C3	O3	193.3	183.2
C3	C2	C1	H2	118.2	119.9
C1	C2	C3	H3	73.4	62.9
C1	C2	N2	CAB	95.1	90.2
N2	C2	C1	H2	240.9	239.8
C1	C2	N2	H9	275.1	270.3
CA3	CA2	CA1	OA5	305.4	296.1
CA1	OA5	CA5	H22	161.3	160.4
C5	C4	O4	H5	240.3	239.8
O4	C4	C3	H3	47.5	57.0
C4	C3	C2	N2	190.5	183.1
C4	C3	C2	H2	71.5	62.9
C2	C3	C4	H3	120.1	119.9
O3	C3	C4	H3	240.1	239.8
C4	C3	O3	H4	180.0	60.5
OA5	CA5	CA4	H15	176.7	184.7
CA4	CA5	OA5	H22	121.8	124.4
CA6	CA5	OA5	H22	242.5	237.7
C2	N2	CAB	OAC	5.3	355.7
CAA	CAB	OAC	N2	179.2	180.0
OAC	CAB	N2	H9	185.3	175.6
OAC	CAB	CAA	H6	0.0	90.0
OAC	CAB	CAA	H7	120.0	210.0
OAC	CAB	CAA	H8	240.0	330.0
C1	C2	C3	N2	122.7	119.9
C3	C2	C1	H1	292.2	297.6
C1	C2	C3	H2	241.7	240.1
C4	C3	C2	H3	239.8	240.1
C3	C2	N2	CAB	218.1	209.9
N2	C2	C3	H2	119.1	120.2
C3	C2	N2	H9	38.1	29.9
O3	C3	C2	H3	119.9	120.2
C2	C3	O3	H4	302.1	180.0
C1	C2	N2	C3	237.0	240.4
N2	C2	C1	H1	54.9	57.5
C1	C2	N2	H2	118.5	120.2
OAC	CAB	N2	C2	5.3	355.7
N2	C2	C3	O3	70.6	63.3
C3	C2	N2	H2	241.5	239.8
N2	C2	C3	H3	310.7	303.0
CAA	CAB	N2	C2	186.1	175.7
CAB	N2	C2	H9	180.0	179.9
C4	C3	O3	H3	118.9	120.3
O3	C3	C2	N2	70.6	63.3
O3	C3	C2	H2	311.6	303.1
C2	C3	O3	H3	241.1	239.8
OAC	CAB	N2	CAA	179.2	180.0
CAB	N2	C2	H2	336.5	330.0
C2	N2	CAB	H9	180.0	180.1
N2	CAB	CAA	H6	179.2	270.0
N2	CAB	CAA	H7	299.2	30.0
N2	CAB	CAA	H8	59.2	150.0
OAC	CAB	CAA	N2	180.8	180.0
C2	N2	CAB	CAA	186.1	175.7
CAA	CAB	N2	H9	6.1	355.6
H6	CAA	CAB	H7	240.0	240.0
H6	CAA	CAB	H8	120.0	120.0
H7	CAA	CAB	H8	240.0	240.0
O1	C1	H1	C2	117.5	120.0
H1	C1	C2	C3	292.2	297.6
H1	C1	C2	N2	54.9	57.5
H1	C1	C2	H2	174.0	177.7
C1	C2	H2	C3	120.0	119.7
C1	C2	H2	N2	240.0	239.8
H2	C2	C1	H1	174.0	177.7
C3	C2	H2	N2	120.0	120.1
H2	C2	C3	O3	311.6	303.1
H2	C2	C3	H3	191.6	182.9
H2	C2	N2	CAB	336.5	330.0
H2	C2	N2	H9	156.5	150.1
H3	C3	C2	N2	310.7	303.0
C2	C3	H3	O3	119.0	120.2
H3	C3	C2	H2	191.6	182.9
H3	C3	O3	H4	61.0	300.2
H4	O3	C3	H3	61.0	300.2
H5	C4	O4	H10	299.8	59.8
H5	C4	C3	H3	168.4	177.1
H6	CAA	CAB	N2	179.2	270.0
CAB	CAA	H6	H7	120.0	120.0
CAB	CAA	H6	H8	240.0	240.1
H7	CAA	H6	H8	120.0	120.1
H7	CAA	CAB	N2	299.2	30.0
CAB	CAA	H7	H6	240.0	240.0
CAB	CAA	H7	H8	120.0	119.9
H6	CAA	H7	H8	240.0	239.9
H8	CAA	CAB	N2	59.2	150.0
CAB	CAA	H8	H6	120.0	119.9
CAB	CAA	H8	H7	240.0	240.0
H6	CAA	H8	H7	120.0	120.1
C2	N2	H9	CAB	180.0	179.9
H9	N2	C2	H2	156.5	150.1
H10	O4	C4	H5	299.8	59.8
H11	C5	C4	H5	182.8	182.3
O6	C6	H12	H13	118.5	240.1
H12	C6	C5	H11	60.2	65.0
O6	C6	H13	H12	241.5	119.9
H13	C6	C5	H11	301.3	185.0
H14	O6	C6	H12	300.5	60.0
H14	O6	C6	H13	59.5	300.0
CA3	CA4	H15	CA5	123.4	119.2
H15	CA4	CA5	OA5	176.7	184.7
H15	CA4	CA5	H22	299.1	309.3
OAH	CA3	H16	CA2	241.5	239.9
H16	CA3	CA2	NAD	25.2	51.7
H16	CA3	CA2	CA1	149.6	171.5
H16	CA3	CA2	H26	267.4	291.4
H16	CA3	CA4	CA5	209.6	188.0
H16	CA3	CA4	H15	88.1	68.2
H18	CAJ	CAI	H17	299.0	300.0
H19	CAJ	H18	H20	120.0	120.0
H19	CAJ	CAI	H17	59.1	60.0
H18	CAJ	H19	H20	240.0	240.1
H20	CAJ	CAI	H17	179.0	180.0
H18	CAJ	H20	H19	120.0	119.9
CA4	CA5	H22	OA5	238.9	238.6
H22	CA5	CA4	H15	299.1	309.3
OA6	CA6	H23	H24	122.8	237.7
H23	CA6	CA5	H22	95.1	334.2
OA6	CA6	H24	H23	237.2	122.3
H24	CA6	CA5	H22	333.1	96.3
CA3	CA2	H26	NAD	119.8	120.3
CA3	CA2	H26	CA1	238.5	240.6
H26	CA2	CA3	H16	267.4	291.4
H26	CA2	NAD	H27	170.6	147.2
H26	CA2	CA1	H25	66.7	53.4
H27	NAD	CA2	H26	170.6	147.2
CAE	CAF	H28	H29	120.0	120.0
CAE	CAF	H28	H30	240.0	239.9
H29	CAF	H28	H30	120.0	120.0
CAE	CAF	H29	H28	240.0	240.0
CAE	CAF	H29	H30	120.0	120.0
H28	CAF	H29	H30	240.0	240.0
CAE	CAF	H30	H28	120.0	120.1
CAE	CAF	H30	H29	240.0	240.0
H28	CAF	H30	H29	120.0	119.9