PDB Chemical Component 2YO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2YO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
C11 |
1.515 |
1.531 |
| C10 |
C9 |
1.516 |
1.532 |
| C11 |
C12 |
1.510 |
1.531 |
| C9 |
C8 |
1.513 |
1.530 |
| C12 |
N4 |
1.493 |
1.469 |
| C8 |
N4 |
1.495 |
1.468 |
| N4 |
C7 |
1.497 |
1.469 |
| C7 |
C6 |
1.512 |
1.529 |
| C6 |
N3 |
1.452 |
1.466 |
| N3 |
C5 |
1.335 |
1.378 |
| C5 |
N5 |
1.322 |
1.367 |
| C5 |
N2 |
1.351 |
1.308 |
| N5 |
C13 |
1.393 |
1.384 |
| N2 |
C4 |
1.382 |
1.360 |
| C13 |
C4 |
1.394 |
1.409 |
| C13 |
C14 |
1.398 |
1.386 |
| C4 |
C3 |
1.378 |
1.392 |
| C14 |
C15 |
1.399 |
1.384 |
| C3 |
C2 |
1.393 |
1.389 |
| C15 |
C2 |
1.410 |
1.411 |
| C15 |
N6 |
1.392 |
1.384 |
| C2 |
C1 |
1.465 |
1.474 |
| N6 |
C |
1.345 |
1.345 |
| C1 |
O |
1.228 |
1.218 |
| C1 |
N1 |
1.389 |
1.347 |
| C |
N1 |
1.345 |
1.303 |
| N6 |
H1 |
1.000 |
0.969 |
| C |
H2 |
1.080 |
1.080 |
| C14 |
H3 |
1.080 |
1.079 |
| C3 |
H4 |
1.080 |
1.080 |
| N5 |
H5 |
1.000 |
0.970 |
| N3 |
H7 |
1.000 |
0.970 |
| C6 |
H8 |
1.100 |
1.089 |
| C6 |
H9 |
1.100 |
1.090 |
| C7 |
H10 |
1.100 |
1.090 |
| C7 |
H11 |
1.100 |
1.090 |
| C12 |
H13 |
1.100 |
1.090 |
| C12 |
H14 |
1.100 |
1.090 |
| C11 |
H15 |
1.100 |
1.090 |
| C11 |
H16 |
1.100 |
1.089 |
| C10 |
H17 |
1.100 |
1.090 |
| C10 |
H18 |
1.100 |
1.090 |
| C9 |
H19 |
1.100 |
1.090 |
| C9 |
H20 |
1.100 |
1.090 |
| C8 |
H21 |
1.100 |
1.090 |
| C8 |
H22 |
1.100 |
1.090 |
Bond Angles for 2YO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C11 |
H15 |
109.0 |
109.5 |
| C10 |
C11 |
H16 |
109.1 |
109.6 |
| C10 |
C9 |
C8 |
111.5 |
109.3 |
| C9 |
C10 |
H17 |
109.2 |
109.5 |
| C9 |
C10 |
H18 |
109.2 |
109.5 |
| C10 |
C9 |
H19 |
109.0 |
109.5 |
| C10 |
C9 |
H20 |
109.0 |
109.5 |
| C11 |
C12 |
H13 |
109.1 |
109.4 |
| C11 |
C12 |
H14 |
109.2 |
109.5 |
| C8 |
C9 |
H19 |
108.9 |
109.6 |
| C8 |
C9 |
H20 |
108.9 |
109.5 |
| C9 |
C8 |
H21 |
109.1 |
109.4 |
| C9 |
C8 |
H22 |
109.1 |
109.4 |
| N4 |
C7 |
H10 |
108.6 |
109.5 |
| N4 |
C7 |
H11 |
108.6 |
109.5 |
| C7 |
C6 |
H8 |
108.8 |
109.5 |
| C7 |
C6 |
H9 |
108.7 |
109.5 |
| C6 |
N3 |
H7 |
106.2 |
120.0 |
| C5 |
N5 |
H5 |
127.9 |
126.3 |
| C13 |
C4 |
C3 |
120.9 |
119.9 |
| C13 |
C14 |
H3 |
120.1 |
120.2 |
| C4 |
C3 |
H4 |
119.8 |
120.3 |
| C15 |
N6 |
C |
121.6 |
120.4 |
| C15 |
N6 |
H1 |
119.2 |
119.8 |
| C |
N6 |
H1 |
119.2 |
119.7 |
| N6 |
C |
H2 |
120.2 |
118.3 |
| H8 |
C6 |
H9 |
109.5 |
109.5 |
| H10 |
C7 |
H11 |
109.4 |
109.5 |
| H13 |
C12 |
H14 |
109.4 |
109.5 |
| H15 |
C11 |
H16 |
109.5 |
109.5 |
| H17 |
C10 |
H18 |
109.5 |
109.6 |
| H19 |
C9 |
H20 |
109.5 |
109.5 |
| H21 |
C8 |
H22 |
109.4 |
109.4 |
Torsion Angles for 2YO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C11 |
C12 |
H13 |
177.4 |
299.2 |
| C10 |
C11 |
C12 |
H14 |
297.0 |
179.2 |
| H15 |
C11 |
C10 |
H16 |
240.5 |
120.1 |
| C9 |
C10 |
C11 |
H15 |
66.6 |
182.4 |
| C9 |
C10 |
C11 |
H16 |
186.1 |
62.3 |
| C8 |
C9 |
C10 |
H19 |
239.7 |
240.0 |
| C8 |
C9 |
C10 |
H20 |
120.3 |
120.0 |
| C10 |
C9 |
C8 |
H21 |
64.2 |
180.8 |
| C10 |
C9 |
C8 |
H22 |
183.8 |
60.9 |
| H17 |
C10 |
C9 |
H18 |
119.6 |
120.2 |
| H19 |
C9 |
C10 |
H20 |
240.6 |
240.0 |
| H13 |
C12 |
C11 |
H14 |
240.4 |
120.0 |
| C8 |
C9 |
C10 |
H17 |
293.0 |
297.7 |
| C8 |
C9 |
C10 |
H18 |
173.3 |
177.5 |
| C10 |
C9 |
C8 |
H19 |
120.3 |
120.0 |
| C10 |
C9 |
C8 |
H20 |
239.7 |
240.1 |
| H19 |
C9 |
C8 |
H20 |
119.4 |
120.1 |
| H21 |
C8 |
C9 |
H22 |
240.4 |
119.9 |
| C12 |
N4 |
C7 |
H10 |
319.6 |
70.0 |
| C12 |
N4 |
C7 |
H11 |
78.5 |
310.0 |
| C8 |
N4 |
C7 |
H10 |
196.5 |
305.8 |
| C8 |
N4 |
C7 |
H11 |
315.5 |
185.8 |
| N4 |
C7 |
C6 |
H8 |
300.1 |
60.0 |
| N4 |
C7 |
C6 |
H9 |
59.2 |
300.0 |
| H10 |
C7 |
N4 |
H11 |
241.1 |
120.0 |
| C7 |
C6 |
N3 |
H7 |
312.4 |
360.0 |
| H8 |
C6 |
C7 |
H9 |
240.9 |
120.0 |
| N3 |
C5 |
N5 |
H5 |
0.1 |
0.1 |
| N2 |
C5 |
N5 |
H5 |
180.3 |
180.1 |
| N5 |
C13 |
C14 |
H3 |
3.9 |
0.1 |
| N2 |
C4 |
C3 |
H4 |
356.7 |
360.0 |
| C4 |
C13 |
C14 |
H3 |
181.6 |
180.0 |
| C13 |
C4 |
C3 |
H4 |
180.1 |
180.0 |
| C14 |
C15 |
N6 |
H1 |
5.0 |
359.9 |
| C |
N6 |
C15 |
H1 |
180.0 |
180.3 |
| C15 |
N6 |
C |
H2 |
179.8 |
180.0 |
| C15 |
N6 |
C |
H1 |
180.0 |
179.7 |
| C15 |
N6 |
H1 |
C |
180.0 |
180.3 |
| H1 |
N6 |
C |
H2 |
359.8 |
0.3 |
| H2 |
C |
N6 |
H1 |
359.8 |
0.3 |
| C7 |
C6 |
H8 |
H9 |
118.7 |
240.0 |
| H8 |
C6 |
N3 |
H7 |
191.9 |
120.0 |
| C7 |
C6 |
H9 |
H8 |
241.3 |
120.0 |
| H9 |
C6 |
N3 |
H7 |
72.8 |
240.0 |
| N4 |
C7 |
H10 |
H11 |
118.4 |
240.0 |
| H10 |
C7 |
C6 |
H8 |
179.6 |
180.0 |
| H10 |
C7 |
C6 |
H9 |
298.7 |
60.0 |
| N4 |
C7 |
H11 |
H10 |
241.6 |
120.0 |
| H11 |
C7 |
C6 |
H8 |
60.6 |
300.0 |
| H11 |
C7 |
C6 |
H9 |
179.8 |
180.0 |
| C11 |
C12 |
H13 |
H14 |
119.4 |
240.0 |
| C11 |
C12 |
H14 |
H13 |
240.6 |
119.9 |
| C10 |
C11 |
H15 |
H16 |
119.2 |
239.8 |
| H15 |
C11 |
C12 |
H13 |
57.1 |
59.1 |
| H15 |
C11 |
C12 |
H14 |
176.7 |
299.1 |
| C10 |
C11 |
H16 |
H15 |
240.8 |
120.1 |
| H16 |
C11 |
C12 |
H13 |
297.7 |
179.2 |
| H16 |
C11 |
C12 |
H14 |
57.3 |
59.2 |
| H17 |
C10 |
C11 |
H15 |
186.8 |
302.3 |
| H17 |
C10 |
C11 |
H16 |
306.2 |
182.2 |
| H17 |
C10 |
C9 |
C8 |
293.0 |
297.7 |
| C9 |
C10 |
H17 |
H18 |
240.6 |
239.8 |
| H17 |
C10 |
C9 |
H19 |
53.3 |
57.7 |
| H17 |
C10 |
C9 |
H20 |
172.7 |
177.8 |
| H18 |
C10 |
C11 |
H15 |
306.4 |
62.5 |
| H18 |
C10 |
C11 |
H16 |
65.9 |
302.4 |
| H18 |
C10 |
C9 |
C8 |
173.3 |
177.5 |
| C9 |
C10 |
H18 |
H17 |
119.4 |
120.2 |
| H18 |
C10 |
C9 |
H19 |
293.6 |
297.5 |
| H18 |
C10 |
C9 |
H20 |
53.0 |
57.5 |
| C10 |
C9 |
H19 |
C8 |
238.1 |
240.2 |
| H19 |
C9 |
C10 |
H17 |
53.3 |
57.7 |
| H19 |
C9 |
C10 |
H18 |
293.6 |
297.5 |
| C10 |
C9 |
H19 |
H20 |
119.1 |
120.0 |
| C8 |
C9 |
H19 |
H20 |
241.0 |
239.9 |
| H19 |
C9 |
C8 |
H21 |
303.9 |
60.8 |
| H19 |
C9 |
C8 |
H22 |
63.5 |
300.9 |
| C10 |
C9 |
H20 |
C8 |
121.9 |
119.8 |
| H20 |
C9 |
C10 |
H17 |
172.7 |
177.8 |
| H20 |
C9 |
C10 |
H18 |
53.0 |
57.5 |
| C10 |
C9 |
H20 |
H19 |
240.9 |
240.0 |
| C8 |
C9 |
H20 |
H19 |
119.0 |
120.1 |
| H20 |
C9 |
C8 |
H21 |
184.5 |
300.7 |
| H20 |
C9 |
C8 |
H22 |
304.1 |
180.8 |
| H21 |
C8 |
C9 |
H19 |
303.9 |
60.8 |
| H21 |
C8 |
C9 |
H20 |
184.5 |
300.7 |
| C9 |
C8 |
H21 |
H22 |
119.4 |
240.1 |
| H22 |
C8 |
C9 |
H19 |
63.5 |
300.9 |
| H22 |
C8 |
C9 |
H20 |
304.1 |
180.8 |
| C9 |
C8 |
H22 |
H21 |
240.6 |
119.9 |