PDB Chemical Component 2YN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2YN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O32 |
PA2 |
1.475 |
1.480 |
| O21 |
PA1 |
1.470 |
1.480 |
| O22 |
PA2 |
1.465 |
1.610 |
| PA2 |
O42 |
1.491 |
1.610 |
| PA2 |
O12 |
1.643 |
1.610 |
| O41 |
PA1 |
1.491 |
1.610 |
| PA1 |
O11 |
1.629 |
1.610 |
| PA1 |
O31 |
1.489 |
1.610 |
| O33 |
PA3 |
1.492 |
1.480 |
| O11 |
C1 |
1.489 |
1.429 |
| O53 |
PB3 |
1.482 |
1.481 |
| O12 |
C2 |
1.404 |
1.429 |
| C2 |
C1 |
1.546 |
1.530 |
| C2 |
C3 |
1.536 |
1.530 |
| C1 |
C6 |
1.512 |
1.530 |
| PA3 |
O23 |
1.622 |
1.610 |
| PA3 |
O13 |
1.624 |
1.609 |
| PA3 |
O43 |
1.584 |
1.610 |
| O36 |
PA6 |
1.496 |
1.479 |
| O63 |
PB3 |
1.473 |
1.609 |
| PB3 |
O43 |
1.614 |
1.611 |
| PB3 |
O73 |
1.458 |
1.609 |
| O13 |
C3 |
1.443 |
1.429 |
| C3 |
C4 |
1.495 |
1.530 |
| C6 |
O16 |
1.434 |
1.429 |
| C6 |
C5 |
1.526 |
1.530 |
| O16 |
PA6 |
1.595 |
1.610 |
| O46 |
PA6 |
1.472 |
1.611 |
| PA6 |
O26 |
1.476 |
1.610 |
| C4 |
C5 |
1.494 |
1.530 |
| C4 |
O14 |
1.447 |
1.429 |
| C5 |
O15 |
1.407 |
1.428 |
| O14 |
PA4 |
1.622 |
1.610 |
| O15 |
PA5 |
1.642 |
1.610 |
| O24 |
PA4 |
1.462 |
1.480 |
| O34 |
PA4 |
1.469 |
1.609 |
| PA4 |
O44 |
1.482 |
1.611 |
| O45 |
PA5 |
1.646 |
1.610 |
| O45 |
PB5 |
1.626 |
1.610 |
| PA5 |
O25 |
1.483 |
1.480 |
| PA5 |
O35 |
1.476 |
1.610 |
| O65 |
PB5 |
1.485 |
1.480 |
| PB5 |
O55 |
1.623 |
1.610 |
| PB5 |
O75 |
1.490 |
1.610 |
| O55 |
H1 |
0.950 |
0.967 |
| O75 |
H2 |
0.950 |
0.968 |
| O35 |
H3 |
0.950 |
0.967 |
| C5 |
H4 |
1.100 |
1.090 |
| C4 |
H5 |
1.100 |
1.090 |
| O34 |
H6 |
0.950 |
0.967 |
| O44 |
H7 |
0.950 |
0.967 |
| C6 |
H8 |
1.100 |
1.089 |
| O46 |
H9 |
0.950 |
0.967 |
| O26 |
H10 |
0.950 |
0.966 |
| C1 |
H11 |
1.100 |
1.090 |
| O31 |
H12 |
0.950 |
0.968 |
| O41 |
H13 |
0.950 |
0.967 |
| C2 |
H14 |
1.100 |
1.090 |
| O22 |
H15 |
0.950 |
0.967 |
| O42 |
H16 |
0.950 |
0.968 |
| C3 |
H17 |
1.100 |
1.090 |
| O23 |
H18 |
0.950 |
0.966 |
| O63 |
H19 |
0.950 |
0.967 |
| O73 |
H20 |
0.950 |
0.967 |
Bond Angles for 2YN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O32 |
PA2 |
O42 |
113.7 |
109.5 |
| O21 |
PA1 |
O31 |
115.6 |
109.5 |
| O22 |
PA2 |
O42 |
116.5 |
109.5 |
| PA2 |
O42 |
H16 |
109.5 |
114.0 |
| PA1 |
O31 |
H12 |
109.5 |
114.0 |
| O33 |
PA3 |
O43 |
117.9 |
109.4 |
| O11 |
C1 |
H11 |
109.5 |
109.5 |
| O12 |
C2 |
C3 |
110.4 |
109.5 |
| O12 |
C2 |
H14 |
110.8 |
109.4 |
| C2 |
C1 |
H11 |
108.9 |
109.4 |
| C3 |
C2 |
H14 |
108.9 |
109.5 |
| C2 |
C3 |
H17 |
108.1 |
109.5 |
| C1 |
C6 |
H8 |
110.0 |
109.4 |
| O23 |
PA3 |
O43 |
105.0 |
109.5 |
| PA3 |
O23 |
H18 |
109.5 |
114.0 |
| O63 |
PB3 |
O73 |
115.6 |
109.5 |
| PB3 |
O73 |
H20 |
109.5 |
114.0 |
| O13 |
C3 |
H17 |
109.3 |
109.4 |
| C3 |
C4 |
H5 |
110.3 |
109.4 |
| C6 |
O16 |
PA6 |
121.3 |
122.9 |
| O16 |
C6 |
H8 |
111.1 |
109.5 |
| C6 |
C5 |
H4 |
109.3 |
109.5 |
| O16 |
PA6 |
O26 |
104.4 |
109.5 |
| O46 |
PA6 |
O26 |
114.9 |
109.5 |
| PA6 |
O26 |
H10 |
109.5 |
114.0 |
| C4 |
C5 |
H4 |
109.8 |
109.4 |
| C4 |
O14 |
PA4 |
122.9 |
123.0 |
| O14 |
C4 |
H5 |
111.0 |
109.5 |
| O14 |
PA4 |
O44 |
100.7 |
109.5 |
| O24 |
PA4 |
O44 |
115.4 |
109.4 |
| O34 |
PA4 |
O44 |
113.6 |
109.5 |
| PA4 |
O44 |
H7 |
109.5 |
113.9 |
| O45 |
PA5 |
O25 |
109.2 |
109.4 |
| O45 |
PA5 |
O35 |
110.5 |
109.5 |
| O35 |
PA5 |
O25 |
120.3 |
109.5 |
| PA5 |
O35 |
H3 |
109.5 |
114.0 |
| O65 |
PB5 |
O75 |
119.6 |
109.5 |
| PB5 |
O55 |
H1 |
109.5 |
114.0 |
| PB5 |
O75 |
H2 |
109.5 |
114.0 |
Torsion Angles for 2YN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O22 |
PA2 |
O32 |
O42 |
221.8 |
239.9 |
| O32 |
PA2 |
O42 |
H16 |
360.0 |
180.0 |
| O21 |
PA1 |
O31 |
H12 |
360.0 |
299.9 |
| O32 |
PA2 |
O22 |
O42 |
137.0 |
120.1 |
| O22 |
PA2 |
O42 |
H16 |
137.6 |
300.1 |
| PA2 |
O12 |
C2 |
C3 |
231.4 |
240.0 |
| PA2 |
O12 |
C2 |
H14 |
352.1 |
0.0 |
| O41 |
PA1 |
O31 |
H12 |
138.2 |
60.0 |
| PA1 |
O11 |
C1 |
H11 |
353.6 |
360.0 |
| O23 |
PA3 |
O33 |
O43 |
120.5 |
120.0 |
| O33 |
PA3 |
O23 |
H18 |
0.0 |
180.1 |
| C2 |
C1 |
O11 |
H11 |
240.2 |
240.0 |
| O11 |
C1 |
C6 |
H8 |
53.0 |
60.0 |
| O53 |
PB3 |
O73 |
H20 |
360.0 |
60.0 |
| O12 |
C2 |
C1 |
H11 |
186.8 |
180.0 |
| C3 |
C2 |
O12 |
H14 |
239.2 |
240.0 |
| O12 |
C2 |
C3 |
H17 |
179.4 |
180.0 |
| O11 |
C1 |
C2 |
H11 |
120.2 |
120.0 |
| C2 |
C1 |
C6 |
H8 |
292.0 |
300.0 |
| O12 |
C2 |
C3 |
H14 |
121.9 |
120.0 |
| C3 |
C2 |
C1 |
H11 |
66.4 |
60.0 |
| O13 |
C3 |
C2 |
H17 |
240.1 |
240.0 |
| C2 |
C3 |
C4 |
H5 |
62.1 |
60.0 |
| O16 |
C6 |
C1 |
H8 |
238.7 |
240.0 |
| C1 |
C6 |
C5 |
H4 |
64.3 |
60.0 |
| O33 |
PA3 |
O23 |
O43 |
232.1 |
240.0 |
| PA3 |
O13 |
C3 |
H17 |
324.5 |
360.0 |
| O43 |
PA3 |
O23 |
H18 |
127.9 |
300.0 |
| O36 |
PA6 |
O26 |
H10 |
360.0 |
180.0 |
| O63 |
PB3 |
O73 |
H20 |
223.4 |
300.0 |
| O13 |
C3 |
C2 |
H14 |
297.6 |
300.0 |
| C2 |
C3 |
O13 |
H17 |
119.2 |
120.0 |
| O13 |
C3 |
C4 |
H5 |
299.6 |
300.0 |
| C3 |
C4 |
C5 |
H4 |
298.3 |
300.0 |
| O14 |
C4 |
C3 |
H5 |
122.0 |
120.0 |
| C1 |
C6 |
O16 |
H8 |
120.6 |
120.0 |
| O16 |
C6 |
C5 |
H4 |
306.9 |
300.0 |
| C6 |
O16 |
PA6 |
O26 |
137.9 |
294.9 |
| C4 |
C5 |
C6 |
H4 |
238.2 |
240.0 |
| PA6 |
O16 |
C6 |
H8 |
5.2 |
0.1 |
| O46 |
PA6 |
O16 |
O26 |
237.9 |
240.0 |
| O16 |
PA6 |
O26 |
H10 |
106.7 |
300.1 |
| O16 |
PA6 |
O46 |
O26 |
115.2 |
119.9 |
| O46 |
PA6 |
O26 |
H10 |
223.3 |
60.0 |
| C6 |
C5 |
C4 |
H4 |
121.5 |
120.0 |
| C3 |
C4 |
O14 |
H5 |
238.4 |
240.1 |
| O14 |
C4 |
C5 |
H4 |
55.9 |
60.0 |
| C4 |
O14 |
PA4 |
O44 |
215.1 |
65.0 |
| PA4 |
O14 |
C4 |
H5 |
3.6 |
360.0 |
| O24 |
PA4 |
O14 |
O44 |
241.6 |
240.1 |
| O34 |
PA4 |
O14 |
O44 |
119.0 |
120.0 |
| O14 |
PA4 |
O44 |
H7 |
253.6 |
60.0 |
| O15 |
PA5 |
O35 |
H3 |
125.8 |
300.0 |
| O14 |
PA4 |
O24 |
O44 |
106.9 |
120.0 |
| O34 |
PA4 |
O24 |
O44 |
222.0 |
240.0 |
| O24 |
PA4 |
O44 |
H7 |
360.0 |
180.0 |
| O14 |
PA4 |
O34 |
O44 |
249.7 |
240.0 |
| O24 |
PA4 |
O34 |
O44 |
138.7 |
120.0 |
| O34 |
PA4 |
O44 |
H7 |
139.5 |
300.0 |
| O35 |
PA5 |
O45 |
O25 |
134.4 |
120.0 |
| O45 |
PA5 |
O35 |
H3 |
231.3 |
60.0 |
| O45 |
PB5 |
O55 |
H1 |
246.9 |
180.0 |
| O45 |
PB5 |
O75 |
H2 |
122.8 |
300.0 |
| O45 |
PA5 |
O25 |
O35 |
129.3 |
120.0 |
| O25 |
PA5 |
O35 |
H3 |
360.0 |
179.9 |
| O45 |
PA5 |
O35 |
O25 |
231.3 |
240.1 |
| O65 |
PB5 |
O55 |
H1 |
0.0 |
300.0 |
| O65 |
PB5 |
O75 |
H2 |
0.0 |
180.0 |
| O75 |
PB5 |
O55 |
H1 |
132.9 |
60.0 |
| H3 |
O35 |
PA5 |
O25 |
360.0 |
179.9 |
| H5 |
C4 |
C5 |
H4 |
176.7 |
180.0 |
| H5 |
C4 |
O14 |
PA4 |
3.6 |
360.0 |
| H6 |
O34 |
PA4 |
O44 |
221.2 |
300.0 |
| H8 |
C6 |
O16 |
PA6 |
5.2 |
0.1 |
| H8 |
C6 |
C5 |
H4 |
186.0 |
179.9 |
| H9 |
O46 |
PA6 |
O26 |
137.0 |
60.0 |
| H11 |
C1 |
C6 |
H8 |
172.2 |
180.0 |
| O12 |
C2 |
H14 |
C3 |
238.4 |
240.0 |
| H14 |
C2 |
C1 |
H11 |
306.8 |
300.0 |
| H14 |
C2 |
C3 |
H17 |
57.5 |
60.0 |
| H15 |
O22 |
PA2 |
O42 |
223.0 |
300.0 |
| H17 |
C3 |
C2 |
H14 |
57.5 |
60.0 |
| H17 |
C3 |
C4 |
H5 |
180.7 |
180.0 |
| H18 |
O23 |
PA3 |
O43 |
127.9 |
300.0 |
| H19 |
O63 |
PB3 |
O73 |
137.1 |
300.0 |