PDB Chemical Component 2YH

Ideal Model

Chemical Description

Name N~5~-D-ornithyl-L-ornithine
Formula C10 H22 N4 O3
Formal charge 0
Molecular weight 246.307 g/mol
Component type L-PEPTIDE LINKING

Chemical features

Atom count 39
Chiral atom count 2
Chiral atoms C7 C2
Observed leaving atoms O2 H25
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) N~5~-D-ornithyl-L-ornithine
Systematic name (OpenEye OEToolkits) (2S)-2-azanyl-5-[[(2R)-2,5-bis(azanyl)pentanoyl]amino]pentanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NCCC[C@@H](N)C(=O)NCCC[C@H](N)C(O)=O
SMILES (CACTVS) NCCC[CH](N)C(=O)NCCC[CH](N)C(O)=O
Stereo SMILES (OpenEye) C(C[C@H](C(=O)NCCC[C@@H](C(=O)O)N)N)CN
InChI descriptor InChI=1S/C10H22N4O3/c11-5-1-3-7(12)9(15)14-6-2-4-8(13)10(16)17/h7-8H,1-6,11-13H2,(H,14,15)(H,16,17)/t7-,8+/m1/s1
InChIKey descriptor MCMLHDBHZRLOED-SFYZADRCSA-N

Status Information

Last modified 2014-04-18
Created 2014-04-14
Release status REL
Model PDB code 4Q3D
Processing site RCSB