PDB Chemical Component 2YH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2YH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N3 |
C7 |
1.503 |
1.470 |
| N4 |
C2 |
1.493 |
1.469 |
| C10 |
N2 |
1.498 |
1.469 |
| C10 |
C9 |
1.534 |
1.529 |
| C7 |
C8 |
1.535 |
1.530 |
| C7 |
C6 |
1.506 |
1.507 |
| C8 |
C9 |
1.527 |
1.530 |
| N1 |
C6 |
1.379 |
1.348 |
| N1 |
C5 |
1.478 |
1.465 |
| C4 |
C3 |
1.530 |
1.530 |
| C4 |
C5 |
1.531 |
1.530 |
| C2 |
C3 |
1.527 |
1.530 |
| C2 |
C1 |
1.498 |
1.507 |
| C6 |
O3 |
1.227 |
1.214 |
| O1 |
C1 |
1.329 |
1.208 |
| C1 |
O2 |
1.219 |
1.342 |
| C7 |
H1 |
1.100 |
1.090 |
| N3 |
H2 |
1.000 |
1.009 |
| N3 |
H3 |
1.000 |
1.009 |
| C8 |
H5 |
1.100 |
1.090 |
| C8 |
H6 |
1.100 |
1.089 |
| C9 |
H7 |
1.100 |
1.090 |
| C9 |
H8 |
1.100 |
1.089 |
| C10 |
H9 |
1.100 |
1.090 |
| C10 |
H10 |
1.100 |
1.090 |
| N2 |
H11 |
1.000 |
1.009 |
| N2 |
H12 |
1.000 |
1.009 |
| N1 |
H14 |
1.000 |
0.970 |
| C5 |
H15 |
1.100 |
1.090 |
| C5 |
H16 |
1.100 |
1.090 |
| C4 |
H17 |
1.100 |
1.090 |
| C4 |
H18 |
1.099 |
1.090 |
| C3 |
H19 |
1.100 |
1.089 |
| C3 |
H20 |
1.100 |
1.090 |
| C2 |
H21 |
1.100 |
1.090 |
| N4 |
H22 |
1.000 |
1.009 |
| N4 |
H23 |
1.000 |
1.009 |
| O2 |
H25 |
0.950 |
0.967 |
Bond Angles for 2YH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C7 |
C8 |
110.4 |
109.5 |
| N3 |
C7 |
H1 |
106.5 |
109.5 |
| N4 |
C2 |
C1 |
110.8 |
109.5 |
| N4 |
C2 |
H21 |
108.7 |
109.4 |
| N2 |
C10 |
H9 |
108.5 |
109.4 |
| N2 |
C10 |
H10 |
108.5 |
109.5 |
| C10 |
N2 |
H11 |
109.5 |
111.0 |
| C10 |
N2 |
H12 |
109.4 |
111.0 |
| C10 |
C9 |
H7 |
108.4 |
109.4 |
| C10 |
C9 |
H8 |
108.4 |
109.5 |
| C7 |
C8 |
C9 |
110.6 |
109.5 |
| C8 |
C7 |
H1 |
106.2 |
109.5 |
| C7 |
C8 |
H5 |
109.2 |
109.4 |
| C7 |
C8 |
H6 |
109.2 |
109.5 |
| C9 |
C8 |
H5 |
109.2 |
109.4 |
| C9 |
C8 |
H6 |
109.2 |
109.5 |
| C8 |
C9 |
H7 |
108.4 |
109.4 |
| C8 |
C9 |
H8 |
108.4 |
109.5 |
| C5 |
N1 |
H14 |
123.7 |
120.0 |
| N1 |
C5 |
H15 |
109.5 |
109.5 |
| N1 |
C5 |
H16 |
109.5 |
109.5 |
| C3 |
C4 |
H17 |
109.0 |
109.5 |
| C3 |
C4 |
H18 |
109.0 |
109.4 |
| C4 |
C3 |
H19 |
108.9 |
109.5 |
| C4 |
C3 |
H20 |
108.9 |
109.5 |
| C4 |
C5 |
H15 |
109.5 |
109.5 |
| C4 |
C5 |
H16 |
109.5 |
109.5 |
| C2 |
C3 |
H19 |
108.9 |
109.5 |
| C2 |
C3 |
H20 |
108.9 |
109.4 |
| C2 |
C1 |
O2 |
121.0 |
120.0 |
| C1 |
C2 |
H21 |
108.6 |
109.5 |
| C1 |
O2 |
H25 |
109.5 |
116.9 |
| H2 |
N3 |
H3 |
109.5 |
111.0 |
| H5 |
C8 |
H6 |
109.5 |
109.5 |
| H7 |
C9 |
H8 |
109.5 |
109.5 |
| H9 |
C10 |
H10 |
109.5 |
109.4 |
| H11 |
N2 |
H12 |
109.4 |
110.9 |
| H15 |
C5 |
H16 |
109.5 |
109.5 |
| H17 |
C4 |
H18 |
109.5 |
109.5 |
| H19 |
C3 |
H20 |
109.5 |
109.5 |
| H22 |
N4 |
H23 |
109.5 |
111.0 |
Torsion Angles for 2YH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C7 |
C8 |
C9 |
97.5 |
65.1 |
| C8 |
C7 |
N3 |
H1 |
245.1 |
240.0 |
| N3 |
C7 |
C8 |
H5 |
217.7 |
185.0 |
| N3 |
C7 |
C8 |
H6 |
337.3 |
305.0 |
| N4 |
C2 |
C3 |
H19 |
178.4 |
175.1 |
| N4 |
C2 |
C3 |
H20 |
59.1 |
55.1 |
| N4 |
C2 |
C1 |
O2 |
144.4 |
160.0 |
| C1 |
C2 |
N4 |
H21 |
240.7 |
240.0 |
| N2 |
C10 |
C9 |
H7 |
223.4 |
60.0 |
| N2 |
C10 |
C9 |
H8 |
342.1 |
300.0 |
| H9 |
C10 |
N2 |
H10 |
241.1 |
119.9 |
| H11 |
N2 |
C10 |
H12 |
240.0 |
236.1 |
| C10 |
C9 |
C8 |
H5 |
194.2 |
60.0 |
| C10 |
C9 |
C8 |
H6 |
74.5 |
300.0 |
| C8 |
C9 |
C10 |
H7 |
239.3 |
120.0 |
| C8 |
C9 |
C10 |
H8 |
120.6 |
240.0 |
| H7 |
C9 |
C10 |
H8 |
241.3 |
120.0 |
| N3 |
C7 |
C8 |
H1 |
115.1 |
120.0 |
| C9 |
C8 |
C7 |
H5 |
239.8 |
240.1 |
| C9 |
C8 |
C7 |
H6 |
120.2 |
120.0 |
| C7 |
C8 |
C9 |
H7 |
193.7 |
299.9 |
| C7 |
C8 |
C9 |
H8 |
74.9 |
60.0 |
| H5 |
C8 |
C7 |
H6 |
240.3 |
240.0 |
| C10 |
C9 |
C8 |
H7 |
120.7 |
240.0 |
| C10 |
C9 |
C8 |
H8 |
239.4 |
120.0 |
| C9 |
C8 |
C7 |
H1 |
342.4 |
305.1 |
| C7 |
C8 |
C9 |
H5 |
120.1 |
119.9 |
| C7 |
C8 |
C9 |
H6 |
239.8 |
240.0 |
| H5 |
C8 |
C9 |
H6 |
119.7 |
120.0 |
| H7 |
C9 |
C8 |
H8 |
118.7 |
240.0 |
| C4 |
C5 |
N1 |
H15 |
240.0 |
240.0 |
| C4 |
C5 |
N1 |
H16 |
120.0 |
120.0 |
| H15 |
C5 |
N1 |
H16 |
240.0 |
240.0 |
| C3 |
C4 |
C5 |
H15 |
82.5 |
60.0 |
| C3 |
C4 |
C5 |
H16 |
322.5 |
300.0 |
| C2 |
C3 |
C4 |
H19 |
239.7 |
240.0 |
| C2 |
C3 |
C4 |
H20 |
120.4 |
120.0 |
| H17 |
C4 |
C3 |
H18 |
240.6 |
120.0 |
| H19 |
C3 |
C4 |
H20 |
240.7 |
239.9 |
| C4 |
C5 |
N1 |
H14 |
358.8 |
0.0 |
| N1 |
C5 |
C4 |
H15 |
120.0 |
120.0 |
| N1 |
C5 |
C4 |
H16 |
240.0 |
240.0 |
| H15 |
C5 |
C4 |
H16 |
120.0 |
120.0 |
| C2 |
C3 |
C4 |
H17 |
318.8 |
60.0 |
| C2 |
C3 |
C4 |
H18 |
78.2 |
300.0 |
| C4 |
C3 |
C2 |
H19 |
120.4 |
120.0 |
| C4 |
C3 |
C2 |
H20 |
239.7 |
240.0 |
| H19 |
C3 |
C2 |
H20 |
119.3 |
120.0 |
| N4 |
C2 |
C1 |
H21 |
119.3 |
120.0 |
| C1 |
C2 |
C3 |
H19 |
55.9 |
55.0 |
| C1 |
C2 |
C3 |
H20 |
296.6 |
295.0 |
| C2 |
C1 |
O2 |
H25 |
180.1 |
180.0 |
| O1 |
C1 |
C2 |
H21 |
205.2 |
220.0 |
| O1 |
C1 |
O2 |
H25 |
360.0 |
0.0 |
| O2 |
C1 |
C2 |
H21 |
25.1 |
40.0 |
| N3 |
C7 |
H1 |
C8 |
242.3 |
240.0 |
| H1 |
C7 |
C8 |
C9 |
342.4 |
305.1 |
| H1 |
C7 |
C8 |
H5 |
102.6 |
65.0 |
| H1 |
C7 |
C8 |
H6 |
222.2 |
185.0 |
| H2 |
N3 |
C7 |
C8 |
180.0 |
60.0 |
| H2 |
N3 |
C7 |
H1 |
294.9 |
180.0 |
| H3 |
N3 |
C7 |
C8 |
300.0 |
184.0 |
| H3 |
N3 |
C7 |
H1 |
54.9 |
304.0 |
| C7 |
C8 |
H5 |
C9 |
239.0 |
240.0 |
| H5 |
C8 |
C7 |
H1 |
102.6 |
65.0 |
| C7 |
C8 |
H5 |
H6 |
119.5 |
120.0 |
| C9 |
C8 |
H5 |
H6 |
240.5 |
240.0 |
| H5 |
C8 |
C9 |
H7 |
73.5 |
180.0 |
| H5 |
C8 |
C9 |
H8 |
314.8 |
300.0 |
| C7 |
C8 |
H6 |
C9 |
121.0 |
120.0 |
| H6 |
C8 |
C7 |
H1 |
222.2 |
185.0 |
| C7 |
C8 |
H6 |
H5 |
240.5 |
240.0 |
| C9 |
C8 |
H6 |
H5 |
119.5 |
120.0 |
| H6 |
C8 |
C9 |
H7 |
313.8 |
60.0 |
| H6 |
C8 |
C9 |
H8 |
195.1 |
180.0 |
| C10 |
C9 |
H7 |
H8 |
118.0 |
240.0 |
| H7 |
C9 |
C8 |
H5 |
73.5 |
180.0 |
| H7 |
C9 |
C8 |
H6 |
313.8 |
60.0 |
| C8 |
C9 |
H7 |
H8 |
242.0 |
120.0 |
| C10 |
C9 |
H8 |
H7 |
242.0 |
120.0 |
| H8 |
C9 |
C8 |
H5 |
314.8 |
300.0 |
| H8 |
C9 |
C8 |
H6 |
195.1 |
180.0 |
| C8 |
C9 |
H8 |
H7 |
118.0 |
240.0 |
| N2 |
C10 |
H9 |
H10 |
118.3 |
240.1 |
| H9 |
C10 |
N2 |
H11 |
300.6 |
60.0 |
| H9 |
C10 |
N2 |
H12 |
60.5 |
183.9 |
| H9 |
C10 |
C9 |
H7 |
102.8 |
180.0 |
| H9 |
C10 |
C9 |
H8 |
221.5 |
60.0 |
| N2 |
C10 |
H10 |
H9 |
241.7 |
119.9 |
| H10 |
C10 |
N2 |
H11 |
59.5 |
300.1 |
| H10 |
C10 |
N2 |
H12 |
179.4 |
64.0 |
| H10 |
C10 |
C9 |
H7 |
344.0 |
300.0 |
| H10 |
C10 |
C9 |
H8 |
102.7 |
180.0 |
| H11 |
N2 |
C10 |
H9 |
300.6 |
60.0 |
| H11 |
N2 |
C10 |
H10 |
59.5 |
300.1 |
| C10 |
N2 |
H11 |
H12 |
120.0 |
123.9 |
| H12 |
N2 |
C10 |
H9 |
60.5 |
183.9 |
| H12 |
N2 |
C10 |
H10 |
179.4 |
64.0 |
| C10 |
N2 |
H12 |
H11 |
240.0 |
236.1 |
| H14 |
N1 |
C5 |
H15 |
118.8 |
120.0 |
| H14 |
N1 |
C5 |
H16 |
238.8 |
240.0 |
| H15 |
C5 |
N1 |
H14 |
118.8 |
120.0 |
| N1 |
C5 |
H15 |
H16 |
120.0 |
120.0 |
| C4 |
C5 |
H15 |
H16 |
240.0 |
240.0 |
| H16 |
C5 |
N1 |
H14 |
238.8 |
240.0 |
| N1 |
C5 |
H16 |
H15 |
240.0 |
240.0 |
| C4 |
C5 |
H16 |
H15 |
120.0 |
120.0 |
| C3 |
C4 |
H17 |
H18 |
119.1 |
240.0 |
| H17 |
C4 |
C3 |
H19 |
79.1 |
179.9 |
| H17 |
C4 |
C3 |
H20 |
198.4 |
300.0 |
| H17 |
C4 |
C5 |
H15 |
322.2 |
180.0 |
| H17 |
C4 |
C5 |
H16 |
202.2 |
60.0 |
| C3 |
C4 |
H18 |
H17 |
240.9 |
120.0 |
| H18 |
C4 |
C3 |
H19 |
198.5 |
60.0 |
| H18 |
C4 |
C3 |
H20 |
317.8 |
180.0 |
| H18 |
C4 |
C5 |
H15 |
202.8 |
300.0 |
| H18 |
C4 |
C5 |
H16 |
82.8 |
180.0 |
| H19 |
C3 |
C4 |
H17 |
79.1 |
179.9 |
| H19 |
C3 |
C4 |
H18 |
198.5 |
60.0 |
| C4 |
C3 |
H19 |
H20 |
118.9 |
120.1 |
| C2 |
C3 |
H19 |
H20 |
241.1 |
240.1 |
| H20 |
C3 |
C4 |
H17 |
198.4 |
300.0 |
| H20 |
C3 |
C4 |
H18 |
317.8 |
180.0 |
| C4 |
C3 |
H20 |
H19 |
241.1 |
240.0 |
| C2 |
C3 |
H20 |
H19 |
118.9 |
120.0 |
| N4 |
C2 |
H21 |
C1 |
239.4 |
240.0 |
| H21 |
C2 |
C3 |
H19 |
297.7 |
295.0 |
| H21 |
C2 |
C3 |
H20 |
178.5 |
175.0 |
| H21 |
C2 |
C1 |
O2 |
25.1 |
40.0 |
| H22 |
N4 |
C2 |
C1 |
301.6 |
60.0 |
| H22 |
N4 |
C2 |
H21 |
60.9 |
180.0 |
| H23 |
N4 |
C2 |
C1 |
61.6 |
183.9 |
| H23 |
N4 |
C2 |
H21 |
180.9 |
303.9 |