PDB Chemical Component 2YB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2YB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C19 C20 1.394 1.382
C19 C18 1.384 1.380
C20 C21 1.389 1.384
C18 C17 1.401 1.393
C21 C22 1.514 1.506
C21 C38 1.392 1.380
C17 C38 1.412 1.394
C17 C16 1.489 1.483
C1 C2 1.513 1.507
C22 O23 1.438 1.429
C16 C2 1.405 1.393
C16 C14 1.404 1.394
C2 C3 1.378 1.379
O23 C24 1.362 1.359
C15 C14 1.515 1.507
C14 C13 1.379 1.379
C3 C4 1.394 1.388
C24 C25 1.393 1.388
C24 C37 1.394 1.384
C25 C26 1.389 1.383
O33 C31 1.210 1.209
C37 C36 1.397 1.392
C13 C4 1.387 1.388
C4 O5 1.362 1.359
C30 C31 1.502 1.507
C30 C28 1.525 1.530
C26 C27 1.376 1.377
C36 C27 1.387 1.390
C36 O35 1.364 1.361
C31 O32 1.358 1.342
C27 C28 1.505 1.517
O5 C6 1.438 1.429
O35 C34 1.447 1.438
C6 C7 1.528 1.530
C28 C34 1.553 1.547
C7 C8 1.529 1.531
C10 S9 1.821 1.814
C8 S9 1.821 1.814
O11 S9 1.426 1.421
S9 O12 1.427 1.421
C6 H1 1.100 1.090
C6 H2 1.101 1.090
C7 H3 1.099 1.090
C7 H4 1.100 1.090
C8 H5 1.100 1.090
C8 H6 1.100 1.090
C10 H7 1.100 1.090
C10 H8 1.100 1.090
C10 H9 1.100 1.090
C13 H10 1.080 1.080
C15 H11 1.100 1.090
C15 H12 1.100 1.090
C15 H13 1.100 1.090
C20 H14 1.080 1.080
C22 H15 1.100 1.090
C22 H16 1.100 1.091
C26 H17 1.080 1.080
C28 H18 1.100 1.090
C1 H19 1.101 1.090
C1 H20 1.100 1.090
C1 H21 1.100 1.089
C3 H22 1.080 1.080
C18 H23 1.080 1.080
C19 H24 1.080 1.080
C25 H25 1.080 1.080
C30 H26 1.100 1.090
C30 H27 1.100 1.089
O32 H28 0.950 0.967
C34 H29 1.100 1.090
C34 H30 1.101 1.090
C37 H31 1.080 1.080
C38 H32 1.080 1.080

Bond Angles for 2YB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C19 C20 H14 119.8 119.9
C19 C18 H23 120.6 120.1
C20 C21 C22 119.9 119.9
C20 C21 C38 119.6 120.1
C21 C20 H14 119.9 119.9
C18 C17 C38 120.2 119.7
C22 C21 C38 120.5 120.0
C21 C22 O23 109.2 109.5
C21 C22 H15 109.6 109.5
C21 C22 H16 109.5 109.5
C17 C38 C21 119.9 119.9
C21 C38 H32 120.0 120.0
C16 C17 C38 118.2 120.1
C17 C38 H32 120.1 120.1
C17 C16 C2 119.9 120.1
C17 C16 C14 120.2 120.0
C1 C2 C3 118.1 120.0
C2 C1 H19 109.5 109.4
C2 C1 H20 109.5 109.4
C2 C1 H21 109.4 109.5
C22 O23 C24 122.2 117.0
O23 C22 H15 109.5 109.5
O23 C22 H16 109.6 109.4
C2 C3 H22 119.6 119.9
O23 C24 C25 121.0 119.8
O23 C24 C37 118.9 120.0
C14 C15 H11 109.5 109.5
C14 C15 H12 109.5 109.5
C14 C15 H13 109.5 109.5
C14 C13 H10 119.8 120.0
C3 C4 O5 121.1 119.9
C25 C24 C37 120.2 120.2
C24 C25 C26 119.1 119.7
C24 C25 H25 120.5 120.2
C24 C37 C36 120.5 120.2
C24 C37 H31 119.8 119.8
C25 C26 C27 120.5 120.0
C25 C26 H17 119.7 120.0
C13 C4 O5 119.0 119.9
C4 O5 C6 119.1 117.0
C30 C31 O32 124.8 120.0
C31 C30 H26 108.3 109.4
C31 C30 H27 108.3 109.5
C30 C28 C34 112.2 111.0
C30 C28 H18 111.8 110.8
C26 C27 C28 130.6 132.1
C27 C26 H17 119.7 120.0
C31 O32 H28 109.5 117.0
C27 C28 C34 103.7 102.0
C27 C28 H18 112.1 110.9
O5 C6 H1 109.7 109.5
O5 C6 H2 109.7 109.5
O35 C34 H29 110.8 110.8
O35 C34 H30 110.7 110.9
C6 C7 C8 107.8 109.5
C7 C6 H1 109.7 109.5
C7 C6 H2 109.7 109.4
C6 C7 H3 109.9 109.5
C6 C7 H4 109.9 109.5
C34 C28 H18 111.4 110.9
C28 C34 H29 110.7 110.7
C28 C34 H30 110.7 110.8
C7 C8 S9 112.1 109.5
C8 C7 H3 109.9 109.4
C8 C7 H4 109.9 109.5
C7 C8 H5 108.8 109.4
C7 C8 H6 108.8 109.5
C8 S9 C10 103.2 101.9
C10 S9 O12 109.0 108.6
S9 C10 H7 109.5 109.5
S9 C10 H8 109.5 109.5
S9 C10 H9 109.4 109.5
C8 S9 O12 106.3 108.6
S9 C8 H5 108.8 109.5
S9 C8 H6 108.8 109.5
O11 S9 O12 118.7 119.2
H1 C6 H2 109.5 109.5
H3 C7 H4 109.5 109.4
H5 C8 H6 109.5 109.5
H7 C10 H8 109.5 109.5
H7 C10 H9 109.5 109.5
H8 C10 H9 109.4 109.4
H11 C15 H12 109.4 109.5
H11 C15 H13 109.5 109.5
H12 C15 H13 109.5 109.4
H15 C22 H16 109.5 109.5
H19 C1 H20 109.4 109.4
H19 C1 H21 109.5 109.5
H20 C1 H21 109.5 109.5
H26 C30 H27 109.5 109.5
H29 C34 H30 109.5 110.7

Torsion Angles for 2YB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C19 C20 C21 C38 1.0 359.4
C21 C20 C19 H14 180.0 180.6
C18 C19 C20 H14 179.6 179.7
C19 C18 C17 C38 0.0 0.1
C19 C20 C21 H14 180.0 179.4
C22 C21 C20 C38 179.3 180.0
C20 C21 C22 O23 270.0 90.0
C20 C21 C22 H15 29.9 210.0
C20 C21 C22 H16 150.0 330.1
C17 C38 C21 C20 358.8 0.6
C20 C21 C38 H32 178.8 180.6
C18 C17 C38 C21 0.7 359.7
C16 C17 C18 C38 180.5 179.6
C18 C17 C38 H32 180.7 179.7
C20 C21 C22 C38 180.7 180.0
C22 C21 C20 H14 0.4 0.0
C17 C38 C21 C22 179.5 180.6
C22 C21 C38 H32 359.5 0.6
C21 C22 O23 C24 173.0 180.0
O23 C22 C21 H15 240.1 240.0
O23 C22 C21 H16 120.0 119.9
H15 C22 C21 H16 239.9 240.0
C20 C21 C38 C22 179.3 180.0
C38 C21 C20 H14 181.0 180.0
C38 C21 C22 O23 89.3 270.0
C38 C21 C22 H15 209.2 30.0
C38 C21 C22 H16 329.3 150.1
C16 C17 C38 C21 180.2 180.0
C17 C38 C21 H32 180.0 180.0
C20 C21 C38 C17 358.8 0.6
C22 C21 C38 C17 179.5 180.6
C21 C38 C17 H32 180.0 180.0
C38 C17 C16 C2 74.9 115.0
C38 C17 C16 C14 255.8 294.6
C18 C17 C16 C38 179.5 180.4
C16 C17 C38 H32 0.2 0.1
C17 C16 C2 C1 1.0 359.9
C1 C2 C3 H22 359.9 360.0
H19 C1 C2 H20 240.0 240.1
H19 C1 C2 H21 120.0 120.0
H20 C1 C2 H21 240.0 239.9
O23 C22 C21 C38 89.3 270.0
C21 C22 O23 H15 120.0 120.1
C21 C22 O23 H16 240.1 240.0
C22 O23 C24 C25 18.6 0.1
C22 O23 C24 C37 198.7 179.7
H15 C22 O23 H16 120.1 120.0
C2 C16 C17 C38 74.9 115.0
C17 C16 C2 C14 180.9 179.6
C16 C2 C1 H19 90.2 270.1
C16 C2 C1 H20 210.2 30.0
C16 C2 C1 H21 330.2 150.0
C16 C2 C3 H22 179.6 180.0
C14 C16 C17 C38 255.8 294.6
C17 C16 C14 C2 179.1 180.4
C16 C14 C15 H11 90.1 270.0
C16 C14 C15 H12 210.1 30.0
C16 C14 C15 H13 330.1 150.0
C16 C14 C13 H10 179.3 180.0
C17 C16 C2 C3 181.3 179.9
C3 C2 C1 H19 269.9 90.0
C3 C2 C1 H20 29.9 210.0
C3 C2 C1 H21 149.9 330.0
C2 C3 C4 O5 180.4 180.0
C24 O23 C22 H15 53.1 59.9
C24 O23 C22 H16 293.0 299.9
C25 C24 O23 C37 180.0 180.4
O23 C24 C25 C26 180.5 179.8
O23 C24 C25 H25 0.5 359.8
O23 C24 C37 C36 179.3 180.4
O23 C24 C37 H31 359.3 0.4
C17 C16 C14 C15 359.1 0.0
C15 C14 C13 H10 359.5 360.0
H11 C15 C14 H12 240.0 239.9
H11 C15 C14 H13 120.0 120.0
H12 C15 C14 H13 240.0 240.1
C13 C4 C3 O5 179.5 179.8
C3 C4 O5 C6 349.3 359.8
O23 C24 C25 C37 180.0 179.6
C25 C24 C37 C36 359.3 360.0
C25 C24 C37 H31 179.3 180.0
C24 C25 C26 C27 359.5 359.9
C24 C25 C26 H17 179.6 179.8
O23 C24 C37 C25 180.0 180.4
C37 C24 C25 C26 0.5 0.2
C37 C24 C25 H25 180.4 180.2
C26 C25 C24 C37 0.5 0.2
C24 C25 C26 H25 180.0 180.0
C25 C26 C27 C28 179.7 179.4
C27 C26 C25 H17 180.0 180.1
O33 C31 C30 H26 279.6 240.0
O33 C31 C30 H27 38.2 120.0
O33 C31 O32 H28 0.0 0.1
C24 C37 C36 H31 180.0 180.1
C3 C4 C13 O5 180.5 180.2
C13 C4 O5 C6 169.8 180.0
C4 O5 C6 H1 285.0 60.0
C4 O5 C6 H2 45.3 299.9
C31 C30 C28 C34 273.8 293.6
C31 C30 C28 H18 39.7 57.3
C30 C31 O32 H28 179.9 179.9
H26 C30 C31 H27 241.3 120.0
C27 C28 C30 C34 247.8 247.4
C27 C28 C30 H18 121.9 123.7
C34 C28 C30 H18 234.1 236.3
C30 C28 C34 H29 136.2 334.8
C30 C28 C34 H30 14.6 98.0
C25 C26 C27 H17 180.0 179.9
C26 C27 C28 C34 175.4 195.8
C26 C27 C28 H18 55.1 77.6
C24 C37 C36 C27 0.9 359.7
C36 C27 C26 H17 180.7 179.8
C36 C27 C28 H18 234.2 257.3
C24 C37 C36 O35 180.6 179.4
C36 O35 C34 H29 110.1 269.4
C36 O35 C34 H30 231.8 146.1
O32 C31 C30 H26 99.7 60.1
O32 C31 C30 H27 218.3 300.1
C30 C28 C27 C34 118.0 118.2
C30 C28 C27 H18 238.3 236.4
C28 C27 C26 H17 359.7 359.5
C34 C28 C27 H18 120.3 118.2
C27 C28 C34 H29 249.3 93.0
C27 C28 C34 H30 127.7 216.2
C7 C6 O5 H1 240.1 120.0
C7 C6 O5 H2 119.9 240.1
O5 C6 C7 H3 217.7 300.0
O5 C6 C7 H4 338.2 59.9
H1 C6 O5 H2 239.8 120.1
O35 C34 C28 H18 129.3 92.8
C28 C34 O35 H29 240.8 118.3
C28 C34 O35 H30 119.2 241.6
H29 C34 O35 H30 238.4 123.3
C4 O5 C6 C7 165.2 180.0
O5 C6 C7 H1 119.9 240.0
O5 C6 C7 H2 240.1 120.0
C6 C7 C8 S9 211.3 180.0
C8 C7 C6 H3 240.3 240.0
C8 C7 C6 H4 119.7 120.0
C6 C7 C8 H5 331.7 300.0
C6 C7 C8 H6 90.9 60.0
H1 C6 C7 H2 120.2 240.0
H3 C7 C6 H4 239.5 240.0
C30 C28 C34 H18 126.1 123.6
C27 C28 C34 H18 239.2 241.9
O35 C34 C28 H29 119.2 241.7
O35 C34 C28 H30 240.8 118.5
H29 C34 C28 H30 121.6 236.8
C8 C7 C6 H1 338.1 300.0
C8 C7 C6 H2 217.8 60.0
C6 C7 C8 H3 119.7 120.0
C6 C7 C8 H4 240.3 239.9
C7 C8 S9 C10 304.8 180.0
C7 C8 S9 O12 190.2 65.5
S9 C8 C7 H5 239.6 240.0
S9 C8 C7 H6 120.4 120.0
H3 C7 C8 H4 120.5 119.9
H5 C8 C7 H6 240.8 240.0
C8 S9 C10 O12 247.3 245.5
C10 S9 C8 H5 184.4 60.1
C10 S9 C8 H6 65.2 300.0
O11 S9 C10 O12 130.9 131.0
H7 C10 S9 H8 240.0 240.0
H7 C10 S9 H9 120.0 120.0
H8 C10 S9 H9 240.1 240.0
S9 C8 C7 H3 91.6 60.0
S9 C8 C7 H4 331.0 300.1
C7 C8 S9 H5 120.4 120.0
C7 C8 S9 H6 239.6 240.0
C10 S9 C8 O12 114.6 114.5
C8 S9 C10 H7 180.0 60.0
C8 S9 C10 H8 300.0 180.0
C8 S9 C10 H9 60.0 300.0
O11 S9 C8 O12 230.4 228.9
H5 C8 S9 H6 119.2 120.1
C10 S9 O11 O12 234.6 235.0
O11 S9 C10 H7 63.6 305.5
O11 S9 C10 H8 183.6 65.5
O11 S9 C10 H9 303.6 185.5
C8 S9 O11 O12 122.5 125.0
O11 S9 C8 H5 300.2 174.5
O11 S9 C8 H6 181.0 54.5
C8 S9 O12 C10 110.6 110.0
O12 S9 C10 H7 292.7 174.5
O12 S9 C10 H8 52.7 294.5
O12 S9 C10 H9 172.7 54.5
O12 S9 C8 H5 69.8 305.6
O12 S9 C8 H6 310.6 185.5
O5 C6 H1 H2 120.3 240.0
H1 C6 C7 C8 338.1 300.0
C7 C6 H1 H2 239.6 120.0
H1 C6 C7 H3 97.8 60.0
H1 C6 C7 H4 218.3 180.0
O5 C6 H2 H1 239.7 120.0
H2 C6 C7 C8 217.8 60.0
C7 C6 H2 H1 120.3 240.0
H2 C6 C7 H3 337.6 180.0
H2 C6 C7 H4 98.1 300.0
C6 C7 H3 C8 241.5 240.0
H3 C7 C6 H1 97.8 60.0
H3 C7 C6 H2 337.6 180.0
C6 C7 H3 H4 120.8 120.1
H3 C7 C8 S9 91.6 60.0
C8 C7 H3 H4 239.2 240.1
H3 C7 C8 H5 212.0 180.0
H3 C7 C8 H6 331.2 300.0
C6 C7 H4 C8 118.5 120.0
H4 C7 C6 H1 218.3 180.0
H4 C7 C6 H2 98.1 300.0
C6 C7 H4 H3 239.3 240.0
H4 C7 C8 S9 331.0 300.1
C8 C7 H4 H3 120.8 119.9
H4 C7 C8 H5 91.4 60.1
H4 C7 C8 H6 210.7 180.1
C7 C8 H5 S9 237.6 240.0
H5 C8 C7 H3 212.0 180.0
H5 C8 C7 H4 91.4 60.1
C7 C8 H5 H6 118.8 120.0
H5 C8 S9 C10 184.4 60.1
H5 C8 S9 O12 69.8 305.6
S9 C8 H5 H6 241.2 239.9
C7 C8 H6 S9 122.4 120.0
H6 C8 C7 H3 331.2 300.0
H6 C8 C7 H4 210.7 180.1
C7 C8 H6 H5 241.2 240.1
H6 C8 S9 C10 65.2 300.0
H6 C8 S9 O12 310.6 185.5
S9 C8 H6 H5 118.8 120.1
H7 C10 S9 O12 292.7 174.5
S9 C10 H7 H8 120.0 120.0
S9 C10 H7 H9 240.0 240.0
H8 C10 H7 H9 120.0 119.9
H8 C10 S9 O12 52.7 294.5
S9 C10 H8 H7 240.0 240.0
S9 C10 H8 H9 119.9 120.0
H7 C10 H8 H9 240.0 240.0
H9 C10 S9 O12 172.7 54.5
S9 C10 H9 H7 120.1 120.0
S9 C10 H9 H8 240.1 240.0
H7 C10 H9 H8 120.0 120.0
H10 C13 C4 O5 0.2 0.1
C14 C15 H11 H12 120.0 120.0
C14 C15 H11 H13 240.0 240.0
H12 C15 H11 H13 120.0 120.0
C14 C15 H12 H11 240.0 240.0
C14 C15 H12 H13 120.0 120.0
H11 C15 H12 H13 240.0 240.0
C14 C15 H13 H11 120.1 120.0
C14 C15 H13 H12 240.0 240.0
H11 C15 H13 H12 120.0 120.0
H14 C20 C21 C22 0.4 0.0
H14 C20 C21 C38 181.0 180.0
H15 C22 C21 C38 209.2 30.0
C21 C22 H15 O23 240.3 240.0
C21 C22 H15 H16 120.1 120.0
H15 C22 O23 C24 53.1 59.9
O23 C22 H15 H16 239.8 240.1
H16 C22 C21 C38 329.3 150.1
C21 C22 H16 O23 119.7 120.0
C21 C22 H16 H15 239.9 239.9
H16 C22 O23 C24 293.0 299.9
O23 C22 H16 H15 120.1 120.0
C25 C26 H17 C27 180.0 180.1
H17 C26 C27 C28 359.7 359.5
C30 C28 H18 C34 233.7 236.3
C27 C28 H18 C34 115.7 112.6
H18 C28 C34 H29 10.1 211.1
H18 C28 C34 H30 248.5 334.3
H19 C1 C2 C3 269.9 90.0
C2 C1 H19 H20 120.0 119.9
C2 C1 H19 H21 240.0 240.0
H20 C1 H19 H21 120.0 120.1
H20 C1 C2 C3 29.9 210.0
C2 C1 H20 H19 240.0 240.1
C2 C1 H20 H21 120.0 120.0
H19 C1 H20 H21 240.0 239.9
H21 C1 C2 C3 149.9 330.0
C2 C1 H21 H19 120.0 120.0
C2 C1 H21 H20 240.0 240.0
H19 C1 H21 H20 120.0 120.0
H22 C3 C4 O5 0.4 360.0
H23 C18 C17 C38 180.0 180.0
H24 C19 C20 H14 359.6 359.7
H24 C19 C18 H23 359.9 0.0
H25 C25 C24 C37 180.4 180.2
C24 C25 H25 C26 180.0 180.0
H25 C25 C26 C27 179.6 179.9
H25 C25 C26 H17 359.6 359.8
H26 C30 C31 O32 99.7 60.1
C31 C30 H26 H27 117.9 240.0
H26 C30 C28 C34 153.1 53.5
H26 C30 C28 H18 279.0 177.2
H27 C30 C31 O32 218.3 300.1
C31 C30 H27 H26 242.1 120.0
H27 C30 C28 C34 34.5 173.6
H27 C30 C28 H18 160.3 297.3
O35 C34 H29 H30 122.4 236.6
H29 C34 C28 H18 10.1 211.1
C28 C34 H29 H30 237.6 123.2
O35 C34 H30 H29 237.6 123.4
H30 C34 C28 H18 248.5 334.3
C28 C34 H30 H29 122.4 236.8
C24 C37 H31 C36 180.0 179.9
C17 C38 H32 C21 180.0 180.0