PDB Chemical Component 2Y1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2Y1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAK |
CAN |
1.518 |
1.530 |
| CAK |
CAA |
1.551 |
1.530 |
| CAN |
CBB |
1.506 |
1.507 |
| SAU |
CBB |
1.704 |
1.763 |
| SAU |
CBC |
1.667 |
1.761 |
| CBB |
CBD |
1.372 |
1.337 |
| C5 |
C6 |
1.404 |
1.392 |
| C5 |
C4 |
1.383 |
1.393 |
| NAD |
C6 |
1.348 |
1.386 |
| NAE |
C4 |
1.369 |
1.387 |
| CAG |
CAH |
1.382 |
1.380 |
| CAG |
CAX |
1.385 |
1.396 |
| C6 |
N1 |
1.331 |
1.331 |
| C4 |
N3 |
1.352 |
1.330 |
| CBC |
CAX |
1.392 |
1.478 |
| CBC |
NAQ |
1.341 |
1.303 |
| N1 |
C2 |
1.316 |
1.325 |
| N3 |
C2 |
1.340 |
1.324 |
| CAH |
CAY |
1.396 |
1.387 |
| CAX |
CAJ |
1.384 |
1.397 |
| C2 |
SAT |
1.722 |
1.762 |
| CAB |
OAR |
1.446 |
1.430 |
| CBD |
NAQ |
1.332 |
1.313 |
| CBD |
CBE |
1.516 |
1.507 |
| SAT |
CBE |
1.785 |
1.810 |
| CAY |
OAR |
1.394 |
1.359 |
| CAY |
CAZ |
1.394 |
1.394 |
| CAJ |
CAZ |
1.388 |
1.383 |
| CAZ |
OAS |
1.395 |
1.360 |
| CBE |
CAC |
1.528 |
1.530 |
| OAS |
CAM |
1.426 |
1.429 |
| CAM |
CAL |
1.524 |
1.531 |
| CAL |
FAF |
1.376 |
1.399 |
| CAL |
H1 |
1.100 |
1.090 |
| CAL |
H2 |
1.100 |
1.089 |
| CAM |
H3 |
1.100 |
1.090 |
| CAM |
H4 |
1.100 |
1.090 |
| CAJ |
H5 |
1.080 |
1.080 |
| CAB |
H6 |
1.100 |
1.090 |
| CAB |
H7 |
1.100 |
1.090 |
| CAB |
H8 |
1.100 |
1.090 |
| CAH |
H9 |
1.080 |
1.080 |
| CAG |
H10 |
1.080 |
1.080 |
| CAN |
H11 |
1.100 |
1.090 |
| CAN |
H12 |
1.100 |
1.090 |
| CAK |
H13 |
1.100 |
1.090 |
| CAK |
H14 |
1.099 |
1.090 |
| CAA |
H15 |
1.100 |
1.090 |
| CAA |
H16 |
1.100 |
1.091 |
| CAA |
H17 |
1.100 |
1.090 |
| CBE |
H18 |
1.100 |
1.090 |
| CAC |
H19 |
1.100 |
1.089 |
| CAC |
H20 |
1.100 |
1.091 |
| CAC |
H21 |
1.099 |
1.090 |
| NAD |
H22 |
1.000 |
0.970 |
| NAD |
H23 |
1.000 |
0.970 |
| C5 |
H24 |
1.080 |
1.079 |
| NAE |
H25 |
1.000 |
0.969 |
| NAE |
H26 |
1.000 |
0.971 |
Bond Angles for 2Y1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAK |
CAN |
H11 |
110.3 |
109.5 |
| CAK |
CAN |
H12 |
110.3 |
109.5 |
| CAA |
CAK |
H13 |
109.7 |
109.5 |
| CAA |
CAK |
H14 |
109.7 |
109.5 |
| CAK |
CAA |
H15 |
109.5 |
109.5 |
| CAK |
CAA |
H16 |
109.5 |
109.4 |
| CAK |
CAA |
H17 |
109.5 |
109.5 |
| CAN |
CBB |
CBD |
124.8 |
125.9 |
| SAU |
CBB |
CBD |
107.8 |
108.2 |
| CBB |
CBD |
CBE |
122.7 |
122.0 |
| C4 |
C5 |
H24 |
121.1 |
120.8 |
| CAG |
CAH |
H9 |
120.4 |
119.9 |
| CAX |
CAG |
H10 |
120.2 |
120.0 |
| CAX |
CAJ |
H5 |
121.0 |
120.0 |
| CBD |
CBE |
CAC |
111.8 |
109.5 |
| CBD |
CBE |
H18 |
110.0 |
109.5 |
| SAT |
CBE |
H18 |
106.9 |
109.4 |
| CAC |
CBE |
H18 |
109.9 |
109.5 |
| CBE |
CAC |
H19 |
109.5 |
109.5 |
| CBE |
CAC |
H20 |
109.4 |
109.4 |
| CBE |
CAC |
H21 |
109.5 |
109.4 |
| OAS |
CAM |
H3 |
110.4 |
109.5 |
| OAS |
CAM |
H4 |
110.5 |
109.5 |
| CAM |
CAL |
H1 |
110.4 |
109.5 |
| CAM |
CAL |
H2 |
110.3 |
109.5 |
| H1 |
CAL |
H2 |
109.4 |
109.5 |
| H3 |
CAM |
H4 |
109.5 |
109.5 |
| H6 |
CAB |
H7 |
109.4 |
109.5 |
| H6 |
CAB |
H8 |
109.5 |
109.5 |
| H7 |
CAB |
H8 |
109.5 |
109.5 |
| H11 |
CAN |
H12 |
109.5 |
109.5 |
| H13 |
CAK |
H14 |
109.5 |
109.5 |
| H15 |
CAA |
H16 |
109.5 |
109.5 |
| H15 |
CAA |
H17 |
109.5 |
109.5 |
| H16 |
CAA |
H17 |
109.5 |
109.5 |
| H19 |
CAC |
H20 |
109.4 |
109.5 |
| H19 |
CAC |
H21 |
109.5 |
109.5 |
| H20 |
CAC |
H21 |
109.5 |
109.5 |
| H22 |
NAD |
H23 |
109.4 |
120.0 |
| H25 |
NAE |
H26 |
109.5 |
120.0 |
Torsion Angles for 2Y1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAK |
CAN |
CBB |
CBD |
241.8 |
89.7 |
| H11 |
CAN |
CAK |
H12 |
239.0 |
120.0 |
| CAA |
CAK |
CAN |
H11 |
178.8 |
60.0 |
| CAA |
CAK |
CAN |
H12 |
299.8 |
300.0 |
| H13 |
CAK |
CAA |
H14 |
120.2 |
120.0 |
| H15 |
CAA |
CAK |
H16 |
240.0 |
240.0 |
| H15 |
CAA |
CAK |
H17 |
120.0 |
120.0 |
| H16 |
CAA |
CAK |
H17 |
240.0 |
240.0 |
| SAU |
CBB |
CAN |
CBD |
178.3 |
180.3 |
| CAN |
CBB |
CBD |
CBE |
357.2 |
0.3 |
| CAN |
CBB |
SAU |
CBD |
181.5 |
179.8 |
| SAU |
CBB |
CBD |
CBE |
178.6 |
180.0 |
| CBB |
CBD |
CBE |
CAC |
138.8 |
105.0 |
| CBB |
CBD |
CBE |
H18 |
16.5 |
345.0 |
| NAE |
C4 |
C5 |
H24 |
0.7 |
0.3 |
| CAX |
CAG |
CAH |
H9 |
180.7 |
180.2 |
| CAG |
CAX |
CAJ |
H5 |
181.0 |
180.0 |
| CBC |
CAX |
CAG |
H10 |
0.9 |
0.3 |
| CBC |
CAX |
CAJ |
H5 |
358.7 |
359.8 |
| C2 |
SAT |
CBE |
H18 |
19.1 |
55.1 |
| SAT |
CBE |
CBD |
H18 |
245.7 |
240.1 |
| CAC |
CBE |
CBD |
H18 |
122.3 |
120.1 |
| CBD |
CBE |
CAC |
H19 |
180.0 |
60.0 |
| CBD |
CBE |
CAC |
H20 |
300.0 |
180.0 |
| CBD |
CBE |
CAC |
H21 |
60.0 |
299.9 |
| CBD |
CBE |
SAT |
H18 |
116.5 |
120.0 |
| CAC |
CBE |
SAT |
H18 |
238.5 |
240.0 |
| SAT |
CBE |
CAC |
H19 |
62.3 |
300.0 |
| SAT |
CBE |
CAC |
H20 |
182.3 |
60.0 |
| SAT |
CBE |
CAC |
H21 |
302.3 |
180.0 |
| CAZ |
OAS |
CAM |
H3 |
296.4 |
60.0 |
| CAZ |
OAS |
CAM |
H4 |
57.7 |
300.0 |
| CBD |
CBE |
CAC |
H18 |
237.6 |
240.0 |
| SAT |
CBE |
CAC |
H18 |
119.9 |
120.0 |
| H19 |
CAC |
CBE |
H20 |
240.0 |
240.0 |
| H19 |
CAC |
CBE |
H21 |
120.0 |
120.0 |
| H20 |
CAC |
CBE |
H21 |
240.0 |
240.0 |
| OAS |
CAM |
CAL |
H1 |
291.7 |
305.0 |
| OAS |
CAM |
CAL |
H2 |
52.8 |
185.0 |
| H3 |
CAM |
OAS |
H4 |
238.7 |
120.0 |
| H1 |
CAL |
CAM |
H2 |
238.9 |
120.0 |
| CAM |
CAL |
H1 |
H2 |
121.6 |
240.0 |
| CAM |
CAL |
H2 |
H1 |
238.4 |
120.0 |
| OAS |
CAM |
H3 |
H4 |
121.9 |
240.0 |
| H3 |
CAM |
CAL |
H1 |
172.4 |
65.0 |
| H3 |
CAM |
CAL |
H2 |
293.5 |
305.0 |
| OAS |
CAM |
H4 |
H3 |
238.2 |
120.1 |
| H4 |
CAM |
CAL |
H1 |
51.1 |
185.0 |
| H4 |
CAM |
CAL |
H2 |
172.2 |
65.0 |
| H7 |
CAB |
H6 |
H8 |
120.0 |
120.0 |
| H6 |
CAB |
H7 |
H8 |
240.0 |
240.0 |
| H6 |
CAB |
H8 |
H7 |
120.0 |
120.0 |
| H10 |
CAG |
CAH |
H9 |
0.7 |
359.9 |
| CAK |
CAN |
H11 |
H12 |
121.5 |
240.0 |
| H11 |
CAN |
CBB |
CBD |
122.3 |
209.7 |
| CAK |
CAN |
H12 |
H11 |
238.5 |
120.0 |
| H12 |
CAN |
CBB |
CBD |
1.3 |
329.7 |
| H13 |
CAK |
CAN |
H11 |
298.7 |
180.0 |
| H13 |
CAK |
CAN |
H12 |
59.7 |
60.0 |
| CAA |
CAK |
H13 |
H14 |
239.6 |
240.0 |
| H13 |
CAK |
CAA |
H15 |
60.1 |
300.0 |
| H13 |
CAK |
CAA |
H16 |
180.1 |
60.0 |
| H13 |
CAK |
CAA |
H17 |
300.1 |
180.0 |
| H14 |
CAK |
CAN |
H11 |
58.9 |
300.0 |
| H14 |
CAK |
CAN |
H12 |
180.0 |
179.9 |
| CAA |
CAK |
H14 |
H13 |
120.4 |
120.0 |
| H14 |
CAK |
CAA |
H15 |
299.9 |
180.0 |
| H14 |
CAK |
CAA |
H16 |
59.9 |
300.0 |
| H14 |
CAK |
CAA |
H17 |
179.9 |
60.0 |
| H15 |
CAA |
CAK |
H13 |
60.1 |
300.0 |
| H15 |
CAA |
CAK |
H14 |
299.9 |
180.0 |
| CAK |
CAA |
H15 |
H16 |
120.0 |
120.0 |
| CAK |
CAA |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
CAA |
H15 |
H17 |
120.0 |
120.0 |
| H16 |
CAA |
CAK |
H13 |
180.1 |
60.0 |
| H16 |
CAA |
CAK |
H14 |
59.9 |
300.0 |
| CAK |
CAA |
H16 |
H15 |
239.9 |
240.0 |
| CAK |
CAA |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
CAA |
H16 |
H17 |
240.0 |
240.0 |
| H17 |
CAA |
CAK |
H13 |
300.1 |
180.0 |
| H17 |
CAA |
CAK |
H14 |
179.9 |
60.0 |
| CAK |
CAA |
H17 |
H15 |
120.1 |
120.0 |
| CAK |
CAA |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
CAA |
H17 |
H16 |
120.0 |
120.0 |
| CBD |
CBE |
H18 |
CAC |
123.4 |
120.0 |
| H18 |
CBE |
CAC |
H19 |
302.4 |
180.0 |
| H18 |
CBE |
CAC |
H20 |
62.4 |
300.0 |
| H18 |
CBE |
CAC |
H21 |
182.4 |
60.0 |
| H19 |
CAC |
CBE |
H18 |
302.4 |
180.0 |
| CBE |
CAC |
H19 |
H20 |
120.0 |
120.0 |
| CBE |
CAC |
H19 |
H21 |
240.0 |
240.0 |
| H20 |
CAC |
H19 |
H21 |
120.0 |
120.0 |
| H20 |
CAC |
CBE |
H18 |
62.4 |
300.0 |
| CBE |
CAC |
H20 |
H19 |
240.0 |
240.0 |
| CBE |
CAC |
H20 |
H21 |
120.0 |
119.9 |
| H19 |
CAC |
H20 |
H21 |
240.0 |
239.9 |
| H21 |
CAC |
CBE |
H18 |
182.4 |
60.0 |
| CBE |
CAC |
H21 |
H19 |
120.1 |
120.0 |
| CBE |
CAC |
H21 |
H20 |
240.0 |
240.1 |
| H19 |
CAC |
H21 |
H20 |
120.0 |
120.0 |