PDB Chemical Component 2XY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2XY
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C3 |
1.523 |
|
C4 |
N1 |
1.441 |
|
C4 |
H4 |
1.100 |
|
C4 |
H4A |
1.100 |
|
C1 |
C2 |
1.528 |
|
C1 |
N1 |
1.432 |
|
C1 |
H1 |
1.100 |
|
C1 |
H1A |
1.100 |
|
C2 |
O1 |
1.413 |
|
C2 |
H2 |
1.100 |
|
C2 |
H2A |
1.100 |
|
O2 |
N3 |
1.192 |
|
C3 |
O1 |
1.399 |
|
C3 |
H3 |
1.100 |
|
C3 |
H3A |
1.100 |
|
O3 |
N3 |
1.175 |
|
C5 |
N2 |
1.438 |
|
C5 |
C6 |
1.333 |
|
C5 |
C11 |
1.514 |
|
N1 |
N2 |
1.411 |
|
N2 |
HN2 |
1.000 |
|
C6 |
C7 |
1.513 |
|
C6 |
H6 |
1.080 |
|
C7 |
C8 |
1.325 |
|
C7 |
H7 |
1.080 |
|
C8 |
C9 |
1.519 |
|
C8 |
C10 |
1.525 |
|
C9 |
F2 |
1.363 |
|
C9 |
F3 |
1.357 |
|
C9 |
F1 |
1.332 |
|
C10 |
C11 |
1.309 |
|
C10 |
H10 |
1.080 |
|
C11 |
N3 |
1.468 |
|
Bond Angles for 2XY
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C4 |
N1 |
109.2 |
|
C3 |
C4 |
H4 |
109.5 |
|
C3 |
C4 |
H4A |
109.6 |
|
C4 |
C3 |
O1 |
112.9 |
|
C4 |
C3 |
H3 |
108.3 |
|
C4 |
C3 |
H3A |
107.6 |
|
N1 |
C4 |
H4 |
109.6 |
|
N1 |
C4 |
H4A |
109.6 |
|
C4 |
N1 |
C1 |
115.3 |
|
C4 |
N1 |
N2 |
111.1 |
|
H4 |
C4 |
H4A |
109.3 |
|
C2 |
C1 |
N1 |
107.8 |
|
C2 |
C1 |
H1 |
110.0 |
|
C2 |
C1 |
H1A |
110.4 |
|
C1 |
C2 |
O1 |
110.3 |
|
C1 |
C2 |
H2 |
109.2 |
|
C1 |
C2 |
H2A |
109.0 |
|
N1 |
C1 |
H1 |
110.0 |
|
N1 |
C1 |
H1A |
110.4 |
|
C1 |
N1 |
N2 |
111.1 |
|
H1 |
C1 |
H1A |
108.2 |
|
O1 |
C2 |
H2 |
109.2 |
|
O1 |
C2 |
H2A |
109.1 |
|
C2 |
O1 |
C3 |
113.4 |
|
H2 |
C2 |
H2A |
110.1 |
|
O2 |
N3 |
O3 |
117.0 |
|
O2 |
N3 |
C11 |
123.8 |
|
O1 |
C3 |
H3 |
108.3 |
|
O1 |
C3 |
H3A |
107.5 |
|
H3 |
C3 |
H3A |
112.2 |
|
O3 |
N3 |
C11 |
117.8 |
|
N2 |
C5 |
C6 |
120.6 |
|
N2 |
C5 |
C11 |
116.7 |
|
C5 |
N2 |
N1 |
117.4 |
|
C5 |
N2 |
HN2 |
106.9 |
|
C6 |
C5 |
C11 |
122.6 |
|
C5 |
C6 |
C7 |
118.0 |
|
C5 |
C6 |
H6 |
121.0 |
|
C5 |
C11 |
C10 |
119.4 |
|
C5 |
C11 |
N3 |
118.5 |
|
N1 |
N2 |
HN2 |
106.9 |
|
C7 |
C6 |
H6 |
121.0 |
|
C6 |
C7 |
C8 |
118.9 |
|
C6 |
C7 |
H7 |
120.5 |
|
C8 |
C7 |
H7 |
120.5 |
|
C7 |
C8 |
C9 |
121.0 |
|
C7 |
C8 |
C10 |
122.5 |
|
C9 |
C8 |
C10 |
116.5 |
|
C8 |
C9 |
F2 |
109.4 |
|
C8 |
C9 |
F3 |
110.1 |
|
C8 |
C9 |
F1 |
109.5 |
|
C8 |
C10 |
C11 |
118.5 |
|
C8 |
C10 |
H10 |
120.8 |
|
F2 |
C9 |
F3 |
111.4 |
|
F2 |
C9 |
F1 |
107.0 |
|
F3 |
C9 |
F1 |
109.3 |
|
C11 |
C10 |
H10 |
120.8 |
|
C10 |
C11 |
N3 |
122.0 |
|
Torsion Angles for 2XY
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C4 |
C3 |
H4 |
240.0 |
|
N1 |
C4 |
C3 |
H4A |
120.1 |
|
C3 |
C4 |
N1 |
C1 |
52.5 |
|
C3 |
C4 |
N1 |
N2 |
180.0 |
|
H4 |
C4 |
C3 |
H4A |
240.1 |
|
C2 |
O1 |
C3 |
C4 |
54.3 |
|
O1 |
C3 |
C4 |
H3 |
240.0 |
|
O1 |
C3 |
C4 |
H3A |
118.5 |
|
H3 |
C3 |
C4 |
H3A |
238.5 |
|
C3 |
C4 |
N1 |
H4 |
120.0 |
|
C3 |
C4 |
N1 |
H4A |
239.9 |
|
N1 |
C4 |
C3 |
O1 |
311.1 |
|
N1 |
C4 |
C3 |
H3 |
71.1 |
|
N1 |
C4 |
C3 |
H3A |
192.5 |
|
H4 |
C4 |
N1 |
H4A |
119.9 |
|
C2 |
C1 |
N1 |
C4 |
303.3 |
|
C4 |
N1 |
C1 |
H1 |
183.3 |
|
C4 |
N1 |
C1 |
H1A |
64.0 |
|
C1 |
N1 |
C4 |
N2 |
232.5 |
|
C5 |
N2 |
N1 |
C4 |
130.4 |
|
C4 |
N1 |
N2 |
HN2 |
10.4 |
|
C3 |
C4 |
H4 |
N1 |
240.2 |
|
C3 |
C4 |
H4 |
H4A |
120.1 |
|
H4 |
C4 |
C3 |
O1 |
71.1 |
|
H4 |
C4 |
C3 |
H3 |
191.1 |
|
H4 |
C4 |
C3 |
H3A |
312.6 |
|
N1 |
C4 |
H4 |
H4A |
239.9 |
|
H4 |
C4 |
N1 |
C1 |
292.5 |
|
H4 |
C4 |
N1 |
N2 |
60.0 |
|
C3 |
C4 |
H4A |
N1 |
119.9 |
|
C3 |
C4 |
H4A |
H4 |
239.9 |
|
H4A |
C4 |
C3 |
O1 |
191.0 |
|
H4A |
C4 |
C3 |
H3 |
311.0 |
|
H4A |
C4 |
C3 |
H3A |
72.5 |
|
N1 |
C4 |
H4A |
H4 |
120.1 |
|
H4A |
C4 |
N1 |
C1 |
172.6 |
|
H4A |
C4 |
N1 |
N2 |
300.1 |
|
C4 |
N1 |
C1 |
C2 |
303.3 |
|
N1 |
C1 |
C2 |
H1 |
240.0 |
|
N1 |
C1 |
C2 |
H1A |
120.7 |
|
C2 |
C1 |
N1 |
N2 |
175.8 |
|
H1 |
C1 |
C2 |
H1A |
240.7 |
|
O1 |
C2 |
C1 |
H2 |
240.0 |
|
O1 |
C2 |
C1 |
H2A |
119.7 |
|
C1 |
C2 |
O1 |
C3 |
301.9 |
|
H2 |
C2 |
C1 |
H2A |
239.7 |
|
C1 |
N1 |
C4 |
H4 |
292.5 |
|
C1 |
N1 |
C4 |
H4A |
172.6 |
|
C4 |
N1 |
C1 |
N2 |
127.5 |
|
C2 |
C1 |
N1 |
H1 |
120.0 |
|
C2 |
C1 |
N1 |
H1A |
239.3 |
|
N1 |
C1 |
C2 |
O1 |
57.0 |
|
N1 |
C1 |
C2 |
H2 |
177.0 |
|
N1 |
C1 |
C2 |
H2A |
297.3 |
|
H1 |
C1 |
N1 |
H1A |
119.3 |
|
C5 |
N2 |
N1 |
C1 |
260.1 |
|
C1 |
N1 |
N2 |
HN2 |
140.1 |
|
C2 |
C1 |
H1 |
N1 |
241.4 |
|
C2 |
C1 |
H1 |
H1A |
120.7 |
|
H1 |
C1 |
C2 |
O1 |
177.0 |
|
H1 |
C1 |
C2 |
H2 |
297.0 |
|
H1 |
C1 |
C2 |
H2A |
57.3 |
|
N1 |
C1 |
H1 |
H1A |
239.3 |
|
H1 |
C1 |
N1 |
N2 |
55.8 |
|
C2 |
C1 |
H1A |
N1 |
119.1 |
|
C2 |
C1 |
H1A |
H1 |
239.6 |
|
H1A |
C1 |
C2 |
O1 |
296.3 |
|
H1A |
C1 |
C2 |
H2 |
56.3 |
|
H1A |
C1 |
C2 |
H2A |
176.6 |
|
N1 |
C1 |
H1A |
H1 |
120.5 |
|
H1A |
C1 |
N1 |
N2 |
296.5 |
|
C4 |
C3 |
O1 |
C2 |
54.3 |
|
O1 |
C2 |
C1 |
N1 |
57.0 |
|
O1 |
C2 |
C1 |
H1 |
177.0 |
|
O1 |
C2 |
C1 |
H1A |
296.3 |
|
C1 |
C2 |
O1 |
H2 |
120.0 |
|
C1 |
C2 |
O1 |
H2A |
240.3 |
|
H2 |
C2 |
O1 |
H2A |
120.3 |
|
C2 |
O1 |
C3 |
H3 |
294.3 |
|
C2 |
O1 |
C3 |
H3A |
172.8 |
|
H2 |
C2 |
C1 |
N1 |
177.0 |
|
H2 |
C2 |
C1 |
H1 |
297.0 |
|
H2 |
C2 |
C1 |
H1A |
56.3 |
|
C1 |
C2 |
H2 |
O1 |
239.4 |
|
C1 |
C2 |
H2 |
H2A |
119.6 |
|
O1 |
C2 |
H2 |
H2A |
240.3 |
|
H2 |
C2 |
O1 |
C3 |
181.9 |
|
H2A |
C2 |
C1 |
N1 |
297.3 |
|
H2A |
C2 |
C1 |
H1 |
57.3 |
|
H2A |
C2 |
C1 |
H1A |
176.6 |
|
C1 |
C2 |
H2A |
O1 |
120.4 |
|
C1 |
C2 |
H2A |
H2 |
240.2 |
|
O1 |
C2 |
H2A |
H2 |
119.8 |
|
H2A |
C2 |
O1 |
C3 |
61.6 |
|
O3 |
N3 |
O2 |
C11 |
166.0 |
|
C5 |
C11 |
N3 |
O2 |
175.7 |
|
C10 |
C11 |
N3 |
O2 |
354.9 |
|
O1 |
C3 |
C4 |
N1 |
311.1 |
|
O1 |
C3 |
C4 |
H4 |
71.1 |
|
O1 |
C3 |
C4 |
H4A |
191.0 |
|
C4 |
C3 |
O1 |
H3 |
120.0 |
|
C4 |
C3 |
O1 |
H3A |
241.5 |
|
C3 |
O1 |
C2 |
H2 |
181.9 |
|
C3 |
O1 |
C2 |
H2A |
61.6 |
|
H3 |
C3 |
O1 |
H3A |
121.5 |
|
H3 |
C3 |
C4 |
N1 |
71.1 |
|
H3 |
C3 |
C4 |
H4 |
191.1 |
|
H3 |
C3 |
C4 |
H4A |
311.0 |
|
C4 |
C3 |
H3 |
O1 |
237.1 |
|
C4 |
C3 |
H3 |
H3A |
118.6 |
|
O1 |
C3 |
H3 |
H3A |
241.4 |
|
H3A |
C3 |
C4 |
N1 |
192.5 |
|
H3A |
C3 |
C4 |
H4 |
312.6 |
|
H3A |
C3 |
C4 |
H4A |
72.5 |
|
C4 |
C3 |
H3A |
O1 |
121.9 |
|
C4 |
C3 |
H3A |
H3 |
241.0 |
|
O1 |
C3 |
H3A |
H3 |
119.0 |
|
O2 |
N3 |
O3 |
C11 |
193.1 |
|
C5 |
C11 |
N3 |
O3 |
9.8 |
|
C10 |
C11 |
N3 |
O3 |
189.0 |
|
C4 |
N1 |
N2 |
C5 |
130.4 |
|
C1 |
N1 |
N2 |
C5 |
260.1 |
|
C6 |
C5 |
N2 |
C11 |
183.4 |
|
N2 |
C5 |
C6 |
C7 |
175.4 |
|
N2 |
C5 |
C6 |
H6 |
355.4 |
|
N2 |
C5 |
C11 |
C10 |
183.4 |
|
N2 |
C5 |
C11 |
N3 |
2.6 |
|
N1 |
N2 |
C5 |
HN2 |
240.0 |
|
N2 |
C5 |
C6 |
C11 |
176.4 |
|
C6 |
C5 |
N2 |
N1 |
358.4 |
|
C6 |
C5 |
N2 |
HN2 |
118.4 |
|
C6 |
C5 |
C11 |
C10 |
359.9 |
|
C6 |
C5 |
C11 |
N3 |
179.2 |
|
C7 |
C6 |
C5 |
H6 |
180.0 |
|
C5 |
C6 |
C7 |
C8 |
0.9 |
|
C5 |
C6 |
C7 |
H7 |
180.9 |
|
O2 |
N3 |
C11 |
C5 |
175.7 |
|
O3 |
N3 |
C11 |
C5 |
9.8 |
|
N2 |
C5 |
C11 |
C6 |
183.5 |
|
C11 |
C5 |
N2 |
N1 |
175.0 |
|
C11 |
C5 |
N2 |
HN2 |
295.0 |
|
C11 |
C5 |
C6 |
C7 |
359.0 |
|
C11 |
C5 |
C6 |
H6 |
179.0 |
|
C8 |
C10 |
C11 |
C5 |
1.2 |
|
C5 |
C11 |
C10 |
H10 |
181.2 |
|
C10 |
C11 |
C5 |
N3 |
180.8 |
|
N2 |
N1 |
C4 |
H4 |
60.0 |
|
N2 |
N1 |
C4 |
H4A |
300.1 |
|
C4 |
N1 |
N2 |
C1 |
230.3 |
|
N2 |
N1 |
C1 |
H1 |
55.8 |
|
N2 |
N1 |
C1 |
H1A |
296.5 |
|
N1 |
N2 |
C5 |
C6 |
358.4 |
|
N1 |
N2 |
C5 |
C11 |
175.0 |
|
C5 |
N2 |
N1 |
HN2 |
120.0 |
|
HN2 |
N2 |
C5 |
C6 |
118.4 |
|
HN2 |
N2 |
C5 |
C11 |
295.0 |
|
C5 |
N2 |
HN2 |
N1 |
233.5 |
|
C7 |
C6 |
C5 |
C11 |
359.0 |
|
C5 |
C6 |
C7 |
H6 |
180.0 |
|
C8 |
C7 |
C6 |
H7 |
180.0 |
|
C6 |
C7 |
C8 |
C9 |
179.1 |
|
C6 |
C7 |
C8 |
C10 |
0.3 |
|
H6 |
C6 |
C5 |
C11 |
179.0 |
|
C5 |
C6 |
H6 |
C7 |
180.0 |
|
H6 |
C6 |
C7 |
C8 |
180.9 |
|
H6 |
C6 |
C7 |
H7 |
0.9 |
|
C8 |
C7 |
C6 |
H6 |
180.9 |
|
C6 |
C7 |
C8 |
H7 |
180.0 |
|
C9 |
C8 |
C7 |
C10 |
178.9 |
|
C7 |
C8 |
C9 |
F2 |
209.2 |
|
C7 |
C8 |
C9 |
F3 |
86.4 |
|
C7 |
C8 |
C9 |
F1 |
326.1 |
|
C7 |
C8 |
C10 |
C11 |
358.6 |
|
C7 |
C8 |
C10 |
H10 |
178.6 |
|
H7 |
C7 |
C6 |
H6 |
0.9 |
|
C6 |
C7 |
H7 |
C8 |
180.0 |
|
H7 |
C7 |
C8 |
C9 |
359.1 |
|
H7 |
C7 |
C8 |
C10 |
180.3 |
|
C9 |
C8 |
C7 |
H7 |
359.1 |
|
C7 |
C8 |
C9 |
C10 |
181.1 |
|
C9 |
C8 |
C10 |
C11 |
179.7 |
|
C9 |
C8 |
C10 |
H10 |
359.7 |
|
F2 |
C9 |
C8 |
F3 |
122.8 |
|
F2 |
C9 |
C8 |
F1 |
243.0 |
|
F3 |
C9 |
C8 |
F1 |
120.2 |
|
C5 |
C11 |
C10 |
C8 |
1.2 |
|
C10 |
C8 |
C7 |
H7 |
180.3 |
|
C7 |
C8 |
C10 |
C9 |
178.9 |
|
C10 |
C8 |
C9 |
F2 |
28.1 |
|
C10 |
C8 |
C9 |
F3 |
265.3 |
|
C10 |
C8 |
C9 |
F1 |
145.1 |
|
C11 |
C10 |
C8 |
H10 |
180.0 |
|
C8 |
C10 |
C11 |
N3 |
182.1 |
|
F2 |
C9 |
C8 |
C10 |
28.1 |
|
C8 |
C9 |
F2 |
F3 |
238.0 |
|
C8 |
C9 |
F2 |
F1 |
118.6 |
|
F3 |
C9 |
F2 |
F1 |
240.6 |
|
F3 |
C9 |
C8 |
C10 |
265.3 |
|
C8 |
C9 |
F3 |
F2 |
121.6 |
|
C8 |
C9 |
F3 |
F1 |
239.6 |
|
F2 |
C9 |
F3 |
F1 |
118.0 |
|
F1 |
C9 |
C8 |
C10 |
145.1 |
|
C8 |
C9 |
F1 |
F2 |
241.5 |
|
C8 |
C9 |
F1 |
F3 |
120.7 |
|
F2 |
C9 |
F1 |
F3 |
239.2 |
|
O2 |
N3 |
C11 |
C10 |
354.9 |
|
O3 |
N3 |
C11 |
C10 |
189.0 |
|
C5 |
C11 |
C10 |
N3 |
179.2 |
|
C8 |
C10 |
C11 |
H10 |
180.0 |
|
C8 |
C10 |
H10 |
C11 |
180.0 |
|
H10 |
C10 |
C11 |
N3 |
2.1 |
|
O2 |
N3 |
C11 |
O3 |
165.9 |
|
C5 |
C11 |
N3 |
C10 |
180.8 |
|
N3 |
C11 |
C10 |
H10 |
2.1 |
|