PDB Chemical Component 2XL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2XL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAK |
CAJ |
1.509 |
1.530 |
| CAK |
CAZ |
1.540 |
1.507 |
| CAJ |
CAA |
1.548 |
1.530 |
| SAR |
CAZ |
1.520 |
1.763 |
| SAR |
CBA |
1.538 |
1.763 |
| CAZ |
CAY |
1.328 |
1.337 |
| CAF |
CAG |
1.401 |
1.379 |
| CAF |
CAV |
1.414 |
1.396 |
| NAD |
C4 |
1.355 |
1.386 |
| CAB |
OAP |
1.445 |
1.429 |
| CAG |
CAX |
1.401 |
1.387 |
| C4 |
C5 |
1.399 |
1.392 |
| C4 |
N3 |
1.340 |
1.331 |
| C5 |
C6 |
1.402 |
1.392 |
| CBA |
CAV |
1.335 |
1.478 |
| CBA |
NAO |
1.332 |
1.303 |
| CAV |
CAI |
1.377 |
1.396 |
| N3 |
C2 |
1.365 |
1.325 |
| C6 |
NAC |
1.330 |
1.386 |
| C6 |
N1 |
1.360 |
1.331 |
| CAX |
OAP |
1.377 |
1.360 |
| CAX |
CAU |
1.404 |
1.393 |
| C2 |
N1 |
1.330 |
1.325 |
| C2 |
SAQ |
1.750 |
1.762 |
| CAY |
NAO |
1.339 |
1.314 |
| CAY |
CAL |
1.503 |
1.507 |
| SAQ |
CAL |
1.831 |
1.810 |
| CAI |
CAU |
1.385 |
1.383 |
| CAU |
OAE |
1.360 |
1.359 |
| CAB |
H1 |
1.100 |
1.090 |
| CAB |
H2 |
1.100 |
1.090 |
| CAB |
H3 |
1.100 |
1.089 |
| CAI |
H4 |
1.079 |
1.080 |
| OAE |
H5 |
0.950 |
0.967 |
| CAG |
H6 |
1.080 |
1.080 |
| CAF |
H7 |
1.080 |
1.080 |
| CAK |
H8 |
1.100 |
1.090 |
| CAK |
H9 |
1.100 |
1.090 |
| CAJ |
H10 |
1.100 |
1.090 |
| CAJ |
H11 |
1.100 |
1.090 |
| CAA |
H12 |
1.100 |
1.089 |
| CAA |
H13 |
1.100 |
1.090 |
| CAA |
H14 |
1.100 |
1.090 |
| CAL |
H15 |
1.100 |
1.091 |
| CAL |
H16 |
1.100 |
1.090 |
| NAC |
H17 |
1.000 |
0.970 |
| NAC |
H18 |
1.000 |
0.970 |
| C5 |
H19 |
1.080 |
1.081 |
| NAD |
H20 |
1.000 |
0.970 |
| NAD |
H21 |
1.000 |
0.970 |
Bond Angles for 2XL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAK |
CAJ |
CAA |
108.7 |
109.4 |
| CAJ |
CAK |
H8 |
109.7 |
109.5 |
| CAJ |
CAK |
H9 |
109.7 |
109.5 |
| CAK |
CAJ |
H10 |
109.7 |
109.5 |
| CAK |
CAJ |
H11 |
109.7 |
109.5 |
| CAK |
CAZ |
CAY |
128.2 |
125.9 |
| CAA |
CAJ |
H10 |
109.7 |
109.4 |
| CAA |
CAJ |
H11 |
109.6 |
109.5 |
| CAJ |
CAA |
H12 |
109.5 |
109.5 |
| CAJ |
CAA |
H13 |
109.5 |
109.4 |
| CAJ |
CAA |
H14 |
109.5 |
109.4 |
| SAR |
CAZ |
CAY |
107.7 |
108.3 |
| CAZ |
CAY |
CAL |
124.3 |
122.1 |
| CAF |
CAG |
H6 |
120.5 |
119.9 |
| CAV |
CAF |
H7 |
119.8 |
120.0 |
| OAP |
CAB |
H1 |
109.5 |
109.4 |
| OAP |
CAB |
H2 |
109.5 |
109.5 |
| OAP |
CAB |
H3 |
109.5 |
109.5 |
| C4 |
C5 |
H19 |
120.6 |
120.8 |
| CAV |
CAI |
H4 |
119.8 |
120.1 |
| N3 |
C2 |
N1 |
121.7 |
121.7 |
| C6 |
NAC |
H17 |
109.5 |
120.0 |
| C6 |
NAC |
H18 |
109.4 |
120.1 |
| CAX |
CAU |
OAE |
120.0 |
120.0 |
| CAY |
CAL |
H15 |
109.9 |
109.5 |
| CAY |
CAL |
H16 |
109.9 |
109.5 |
| SAQ |
CAL |
H15 |
109.9 |
109.5 |
| SAQ |
CAL |
H16 |
109.9 |
109.5 |
| CAI |
CAU |
OAE |
119.3 |
120.0 |
| CAU |
OAE |
H5 |
109.5 |
114.0 |
| H1 |
CAB |
H2 |
109.4 |
109.5 |
| H1 |
CAB |
H3 |
109.4 |
109.5 |
| H2 |
CAB |
H3 |
109.5 |
109.5 |
| H8 |
CAK |
H9 |
109.5 |
109.6 |
| H10 |
CAJ |
H11 |
109.5 |
109.5 |
| H12 |
CAA |
H13 |
109.4 |
109.5 |
| H12 |
CAA |
H14 |
109.5 |
109.6 |
| H13 |
CAA |
H14 |
109.4 |
109.4 |
| H15 |
CAL |
H16 |
109.4 |
109.4 |
| H17 |
NAC |
H18 |
109.4 |
120.0 |
| H20 |
NAD |
H21 |
109.5 |
120.0 |
Torsion Angles for 2XL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAJ |
CAK |
CAZ |
CAY |
256.8 |
89.8 |
| CAA |
CAJ |
CAK |
H10 |
240.1 |
240.1 |
| CAA |
CAJ |
CAK |
H11 |
119.9 |
120.1 |
| CAK |
CAJ |
CAA |
H12 |
180.0 |
60.0 |
| CAK |
CAJ |
CAA |
H13 |
300.0 |
180.0 |
| CAK |
CAJ |
CAA |
H14 |
60.0 |
299.9 |
| H8 |
CAK |
CAJ |
H9 |
239.7 |
120.1 |
| H10 |
CAJ |
CAK |
H11 |
239.8 |
240.0 |
| SAR |
CAZ |
CAK |
CAY |
179.1 |
180.1 |
| CAK |
CAZ |
CAY |
CAL |
357.5 |
0.1 |
| CAA |
CAJ |
CAK |
H8 |
212.3 |
60.1 |
| CAA |
CAJ |
CAK |
H9 |
332.6 |
300.0 |
| CAK |
CAJ |
CAA |
H10 |
119.9 |
119.9 |
| CAK |
CAJ |
CAA |
H11 |
240.1 |
239.9 |
| H10 |
CAJ |
CAA |
H11 |
120.2 |
120.0 |
| H12 |
CAA |
CAJ |
H13 |
240.0 |
240.0 |
| H12 |
CAA |
CAJ |
H14 |
120.0 |
120.1 |
| H13 |
CAA |
CAJ |
H14 |
240.0 |
240.1 |
| CAK |
CAZ |
SAR |
CAY |
180.7 |
179.9 |
| SAR |
CAZ |
CAY |
CAL |
178.3 |
180.0 |
| CAZ |
CAY |
CAL |
H15 |
26.4 |
210.1 |
| CAZ |
CAY |
CAL |
H16 |
147.0 |
330.0 |
| CAV |
CAF |
CAG |
H6 |
180.6 |
179.9 |
| CAF |
CAV |
CAI |
H4 |
182.3 |
179.7 |
| NAD |
C4 |
C5 |
H19 |
0.7 |
0.6 |
| H1 |
CAB |
OAP |
H2 |
240.0 |
240.0 |
| H1 |
CAB |
OAP |
H3 |
120.0 |
120.0 |
| H2 |
CAB |
OAP |
H3 |
240.0 |
240.0 |
| C5 |
C6 |
NAC |
H17 |
181.0 |
180.0 |
| C5 |
C6 |
NAC |
H18 |
301.0 |
0.0 |
| CBA |
CAV |
CAF |
H7 |
1.3 |
360.0 |
| CBA |
CAV |
CAI |
H4 |
359.3 |
359.9 |
| H17 |
NAC |
C6 |
H18 |
240.0 |
180.0 |
| CAX |
OAP |
CAB |
H1 |
180.0 |
60.0 |
| CAX |
OAP |
CAB |
H2 |
300.0 |
180.0 |
| CAX |
OAP |
CAB |
H3 |
60.0 |
300.1 |
| CAI |
CAU |
CAX |
OAE |
181.9 |
180.1 |
| CAX |
CAU |
OAE |
H5 |
180.0 |
90.1 |
| C2 |
SAQ |
CAL |
H15 |
7.8 |
60.0 |
| C2 |
SAQ |
CAL |
H16 |
247.3 |
300.0 |
| SAQ |
CAL |
CAY |
H15 |
240.3 |
240.0 |
| SAQ |
CAL |
CAY |
H16 |
119.7 |
120.1 |
| H15 |
CAL |
CAY |
H16 |
239.5 |
240.1 |
| CAY |
CAL |
SAQ |
H15 |
119.8 |
120.0 |
| CAY |
CAL |
SAQ |
H16 |
240.2 |
239.9 |
| H15 |
CAL |
SAQ |
H16 |
120.5 |
120.0 |
| CAX |
CAU |
CAI |
OAE |
178.1 |
179.9 |
| CAI |
CAU |
OAE |
H5 |
358.1 |
270.0 |
| OAP |
CAB |
H1 |
H2 |
120.0 |
120.0 |
| OAP |
CAB |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
CAB |
H1 |
H3 |
120.0 |
120.1 |
| OAP |
CAB |
H2 |
H1 |
240.0 |
240.1 |
| OAP |
CAB |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
CAB |
H2 |
H3 |
240.0 |
239.9 |
| OAP |
CAB |
H3 |
H1 |
120.0 |
120.0 |
| OAP |
CAB |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CAB |
H3 |
H2 |
119.9 |
120.0 |
| H4 |
CAI |
CAU |
OAE |
0.6 |
0.1 |
| H7 |
CAF |
CAG |
H6 |
0.6 |
0.0 |
| H8 |
CAK |
CAJ |
CAA |
212.3 |
60.1 |
| CAJ |
CAK |
H8 |
H9 |
120.5 |
239.9 |
| H8 |
CAK |
CAJ |
H10 |
332.2 |
180.0 |
| H8 |
CAK |
CAJ |
H11 |
92.4 |
300.0 |
| H8 |
CAK |
CAZ |
CAY |
137.0 |
209.8 |
| H9 |
CAK |
CAJ |
CAA |
332.6 |
300.0 |
| CAJ |
CAK |
H9 |
H8 |
239.5 |
120.1 |
| H9 |
CAK |
CAJ |
H10 |
92.5 |
59.9 |
| H9 |
CAK |
CAJ |
H11 |
212.7 |
179.9 |
| H9 |
CAK |
CAZ |
CAY |
16.6 |
329.9 |
| CAK |
CAJ |
H10 |
CAA |
240.7 |
240.1 |
| H10 |
CAJ |
CAK |
H8 |
332.2 |
180.0 |
| H10 |
CAJ |
CAK |
H9 |
92.5 |
59.9 |
| CAK |
CAJ |
H10 |
H11 |
120.4 |
120.1 |
| CAA |
CAJ |
H10 |
H11 |
239.7 |
239.9 |
| H10 |
CAJ |
CAA |
H12 |
60.1 |
300.1 |
| H10 |
CAJ |
CAA |
H13 |
180.1 |
60.1 |
| H10 |
CAJ |
CAA |
H14 |
300.1 |
180.0 |
| CAK |
CAJ |
H11 |
CAA |
119.3 |
120.0 |
| H11 |
CAJ |
CAK |
H8 |
92.4 |
300.0 |
| H11 |
CAJ |
CAK |
H9 |
212.7 |
179.9 |
| CAK |
CAJ |
H11 |
H10 |
239.6 |
240.0 |
| CAA |
CAJ |
H11 |
H10 |
120.3 |
120.0 |
| H11 |
CAJ |
CAA |
H12 |
299.9 |
180.1 |
| H11 |
CAJ |
CAA |
H13 |
59.9 |
300.1 |
| H11 |
CAJ |
CAA |
H14 |
179.9 |
59.9 |
| H12 |
CAA |
CAJ |
H10 |
60.1 |
300.1 |
| H12 |
CAA |
CAJ |
H11 |
299.9 |
180.1 |
| CAJ |
CAA |
H12 |
H13 |
120.0 |
120.0 |
| CAJ |
CAA |
H12 |
H14 |
240.0 |
239.9 |
| H13 |
CAA |
H12 |
H14 |
120.0 |
119.9 |
| H13 |
CAA |
CAJ |
H10 |
180.1 |
60.1 |
| H13 |
CAA |
CAJ |
H11 |
59.9 |
300.1 |
| CAJ |
CAA |
H13 |
H12 |
240.0 |
239.9 |
| CAJ |
CAA |
H13 |
H14 |
120.0 |
119.9 |
| H12 |
CAA |
H13 |
H14 |
240.0 |
240.0 |
| H14 |
CAA |
CAJ |
H10 |
300.1 |
180.0 |
| H14 |
CAA |
CAJ |
H11 |
179.9 |
59.9 |
| CAJ |
CAA |
H14 |
H12 |
120.0 |
120.1 |
| CAJ |
CAA |
H14 |
H13 |
240.0 |
240.1 |
| H12 |
CAA |
H14 |
H13 |
120.0 |
120.0 |
| CAY |
CAL |
H15 |
H16 |
120.8 |
120.0 |
| SAQ |
CAL |
H15 |
H16 |
239.2 |
240.0 |
| CAY |
CAL |
H16 |
H15 |
239.2 |
240.0 |
| SAQ |
CAL |
H16 |
H15 |
120.8 |
120.0 |
| C6 |
NAC |
H17 |
H18 |
120.0 |
180.0 |
| C6 |
NAC |
H18 |
H17 |
240.0 |
180.0 |