PDB Chemical Component 2VQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2VQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5 |
N4 |
1.231 |
1.218 |
| O4 |
N4 |
1.234 |
1.219 |
| N4 |
C3 |
1.411 |
1.480 |
| C3 |
N2 |
1.379 |
1.369 |
| C3 |
C4 |
1.369 |
1.346 |
| C2 |
N2 |
1.471 |
1.466 |
| C2 |
C1 |
1.490 |
1.529 |
| N2 |
C5 |
1.358 |
1.350 |
| C4 |
N3 |
1.350 |
1.340 |
| C1 |
N5 |
1.479 |
1.465 |
| C5 |
N3 |
1.321 |
1.306 |
| C5 |
C6 |
1.471 |
1.506 |
| N5 |
S1 |
1.619 |
1.656 |
| O2 |
S1 |
1.430 |
1.422 |
| N1 |
S1 |
1.598 |
1.656 |
| S1 |
O1 |
1.429 |
1.421 |
| N5 |
H1 |
1.000 |
0.970 |
| C1 |
H2 |
1.101 |
1.090 |
| C1 |
H3 |
1.100 |
1.090 |
| C2 |
H4 |
1.100 |
1.090 |
| C2 |
H5 |
1.100 |
1.091 |
| C4 |
H6 |
1.080 |
1.080 |
| C6 |
H7 |
1.100 |
1.091 |
| C6 |
H8 |
1.100 |
1.090 |
| C6 |
H9 |
1.100 |
1.090 |
| N1 |
H10 |
1.000 |
0.969 |
| N1 |
H11 |
1.000 |
0.970 |
Bond Angles for 2VQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N4 |
C3 |
N2 |
125.6 |
126.6 |
| N4 |
C3 |
C4 |
127.3 |
126.6 |
| C4 |
C3 |
N2 |
106.9 |
106.8 |
| C2 |
N2 |
C3 |
129.0 |
126.4 |
| C3 |
N2 |
C5 |
105.6 |
107.2 |
| C3 |
C4 |
H6 |
125.4 |
125.9 |
| C2 |
N2 |
C5 |
125.2 |
126.4 |
| N2 |
C2 |
H4 |
108.8 |
109.5 |
| N2 |
C2 |
H5 |
108.8 |
109.4 |
| C2 |
C1 |
H2 |
109.4 |
109.5 |
| C2 |
C1 |
H3 |
109.4 |
109.4 |
| C1 |
N5 |
H1 |
107.3 |
120.0 |
| C5 |
C6 |
H7 |
109.5 |
109.5 |
| C5 |
C6 |
H8 |
109.5 |
109.5 |
| C5 |
C6 |
H9 |
109.5 |
109.5 |
| H2 |
C1 |
H3 |
109.5 |
109.4 |
| H4 |
C2 |
H5 |
109.5 |
109.5 |
| H7 |
C6 |
H8 |
109.5 |
109.4 |
| H7 |
C6 |
H9 |
109.5 |
109.4 |
| H8 |
C6 |
H9 |
109.4 |
109.4 |
| H10 |
N1 |
H11 |
109.5 |
120.1 |
Torsion Angles for 2VQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
N4 |
N2 |
186.1 |
180.0 |
| C2 |
N2 |
C3 |
N4 |
10.8 |
0.1 |
| N4 |
C3 |
N2 |
C5 |
186.0 |
180.0 |
| N4 |
C3 |
C4 |
H6 |
353.9 |
0.1 |
| N4 |
C3 |
N2 |
C4 |
185.0 |
180.0 |
| N2 |
C3 |
C4 |
H6 |
179.0 |
180.1 |
| C2 |
N2 |
C3 |
C5 |
184.8 |
180.1 |
| C3 |
N2 |
C2 |
H4 |
189.1 |
329.9 |
| C3 |
N2 |
C2 |
H5 |
308.2 |
210.0 |
| N4 |
C3 |
C4 |
N2 |
174.8 |
180.0 |
| C2 |
N2 |
C3 |
C4 |
185.7 |
180.1 |
| C4 |
C3 |
N2 |
C5 |
1.0 |
360.0 |
| N4 |
C3 |
N2 |
C2 |
10.8 |
0.1 |
| C4 |
C3 |
N2 |
C2 |
185.7 |
180.1 |
| C3 |
N2 |
C2 |
C5 |
174.4 |
179.9 |
| N2 |
C2 |
C1 |
H2 |
175.4 |
59.9 |
| N2 |
C2 |
C1 |
H3 |
295.4 |
300.0 |
| H4 |
C2 |
N2 |
H5 |
240.8 |
119.9 |
| C2 |
C1 |
N5 |
H1 |
238.6 |
345.0 |
| H2 |
C1 |
C2 |
H3 |
240.0 |
119.9 |
| C2 |
N2 |
C5 |
C3 |
175.5 |
179.9 |
| C5 |
N2 |
C2 |
H4 |
14.7 |
150.1 |
| C5 |
N2 |
C2 |
H5 |
133.9 |
30.1 |
| N2 |
C5 |
C6 |
H7 |
175.7 |
270.0 |
| N2 |
C5 |
C6 |
H8 |
295.7 |
30.0 |
| N2 |
C5 |
C6 |
H9 |
55.7 |
150.0 |
| C2 |
N2 |
C5 |
N3 |
174.8 |
179.9 |
| C3 |
N2 |
C5 |
C6 |
183.2 |
180.0 |
| C2 |
N2 |
C5 |
C6 |
358.6 |
359.9 |
| H7 |
C6 |
C5 |
H8 |
240.0 |
240.0 |
| H7 |
C6 |
C5 |
H9 |
120.0 |
120.0 |
| H8 |
C6 |
C5 |
H9 |
240.0 |
240.0 |
| C2 |
C1 |
H2 |
H3 |
119.9 |
240.1 |
| H2 |
C1 |
N5 |
H1 |
118.6 |
105.1 |
| C2 |
C1 |
H3 |
H2 |
240.1 |
120.0 |
| H3 |
C1 |
N5 |
H1 |
358.6 |
225.0 |
| H4 |
C2 |
N2 |
C3 |
189.1 |
329.9 |
| H4 |
C2 |
N2 |
C5 |
14.7 |
150.1 |
| N2 |
C2 |
H4 |
H5 |
118.7 |
240.1 |
| H4 |
C2 |
C1 |
H2 |
55.0 |
180.0 |
| H4 |
C2 |
C1 |
H3 |
175.0 |
60.0 |
| H5 |
C2 |
N2 |
C3 |
308.2 |
210.0 |
| H5 |
C2 |
N2 |
C5 |
133.9 |
30.1 |
| N2 |
C2 |
H5 |
H4 |
241.3 |
119.9 |
| H5 |
C2 |
C1 |
H2 |
295.8 |
300.0 |
| H5 |
C2 |
C1 |
H3 |
55.8 |
180.1 |
| H6 |
C4 |
C3 |
N2 |
179.0 |
180.1 |
| C5 |
C6 |
H7 |
H8 |
120.0 |
120.0 |
| C5 |
C6 |
H7 |
H9 |
240.0 |
239.9 |
| H8 |
C6 |
H7 |
H9 |
120.0 |
119.9 |
| C5 |
C6 |
H8 |
H7 |
240.0 |
240.0 |
| C5 |
C6 |
H8 |
H9 |
120.0 |
120.1 |
| H7 |
C6 |
H8 |
H9 |
240.0 |
240.1 |
| C5 |
C6 |
H9 |
H7 |
120.0 |
120.0 |
| C5 |
C6 |
H9 |
H8 |
240.0 |
239.9 |
| H7 |
C6 |
H9 |
H8 |
120.0 |
119.9 |