PDB Chemical Component 2VJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2VJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O18	C17	1.212	1.212
C14	C13	1.532	1.530
C14	C15	1.521	1.530
C12	C13	1.527	1.529
C12	C11	1.531	1.530
C9	C11	1.537	1.530
C9	C15	1.537	1.531
C9	C7	1.488	1.508
C17	C15	1.529	1.507
C17	N19	1.341	1.348
C22	C23	1.378	1.382
C22	C21	1.382	1.382
C23	C24	1.379	1.383
N8	C7	1.313	1.318
N8	C3	1.328	1.325
C1	C2	1.533	1.530
C2	C3	1.510	1.507
C7	N6	1.300	1.317
C20	C21	1.498	1.507
C20	N19	1.450	1.465
C21	C26	1.385	1.382
C3	C4	1.374	1.381
C24	CL8	1.703	1.737
C24	C25	1.382	1.384
C26	C25	1.372	1.384
C25	CL7	1.768	1.735
N6	C5	1.329	1.330
C4	C5	1.393	1.396
C5	S29	1.776	1.762
S29	C30	1.773	1.762
N35	C30	1.336	1.317
N35	C34	1.357	1.331
C30	N31	1.364	1.352
C34	C33	1.411	1.379
N31	C33	1.411	1.390
C33	C36	1.460	1.418
C36	O37	1.230	1.217
C36	O38	1.373	1.350
C1	H1	1.100	1.090
C1	H2	1.100	1.090
C1	H3	1.100	1.090
C2	H4	1.100	1.091
C2	H5	1.100	1.091
C9	H6	1.100	1.090
C11	H7	1.100	1.090
C11	H8	1.100	1.090
C12	H9	1.100	1.090
C12	H10	1.100	1.090
C13	H11	1.100	1.091
C13	H12	1.100	1.090
C14	H13	1.100	1.090
C14	H14	1.100	1.090
C15	H15	1.101	1.090
C20	H16	1.100	1.090
C20	H17	1.100	1.091
C22	H18	1.080	1.080
C34	H19	1.080	1.081
C4	H20	1.080	1.080
N19	H21	1.000	0.970
C23	H22	1.080	1.081
C26	H23	1.080	1.081
N31	H24	1.000	0.971
O38	H26	0.950	0.966

Bond Angles for 2VJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O18	C17	N19	119.3	120.0
C14	C13	H11	109.2	109.4
C14	C13	H12	109.2	109.5
C9	C15	C14	107.5	109.5
C15	C14	H13	109.3	109.5
C15	C14	H14	109.3	109.4
C14	C15	H15	109.9	109.5
C13	C12	H9	109.1	109.5
C13	C12	H10	109.1	109.5
C12	C13	H11	109.2	109.5
C12	C13	H12	109.2	109.5
C12	C11	H7	109.0	109.4
C12	C11	H8	109.0	109.4
C11	C9	C15	109.1	109.5
C11	C9	H6	110.1	109.5
C9	C11	H7	108.9	109.5
C9	C11	H8	108.9	109.5
C15	C9	H6	110.1	109.5
C9	C15	H15	109.7	109.4
C17	C15	H15	109.8	109.5
C20	N19	C17	120.1	120.0
C17	N19	H21	120.0	119.9
C22	C23	C24	116.6	120.0
C23	C22	H18	119.7	120.0
C22	C23	H22	121.7	120.0
C22	C21	C26	121.4	120.0
C23	C24	CL8	118.4	120.0
C23	C24	C25	124.0	120.0
C1	C2	C3	115.5	109.5
C2	C1	H1	109.5	109.5
C2	C1	H2	109.5	109.5
C2	C1	H3	109.5	109.5
C1	C2	H4	108.0	109.4
C1	C2	H5	107.9	109.5
C2	C3	C4	118.6	120.4
C3	C2	H4	107.9	109.5
C3	C2	H5	107.9	109.5
C7	N6	C5	120.8	120.6
C21	C20	N19	116.2	109.5
C20	C21	C26	121.5	120.0
C21	C20	H16	107.8	109.5
C21	C20	H17	107.8	109.5
N19	C20	H16	107.8	109.5
N19	C20	H17	107.8	109.5
C20	N19	H21	120.0	120.0
C21	C26	C25	119.0	120.0
C21	C26	H23	120.5	120.0
C3	C4	C5	118.1	118.3
C3	C4	H20	121.0	120.8
C25	C24	CL8	117.6	120.0
C24	C25	CL7	119.9	120.1
C26	C25	CL7	121.8	120.0
N6	C5	C4	119.2	119.0
N6	C5	S29	121.3	120.5
C4	C5	S29	119.5	120.5
C5	C4	H20	120.9	120.8
S29	C30	N31	122.0	125.4
N35	C34	H19	125.7	126.1
C30	N31	C33	108.4	106.9
C30	N31	H24	125.8	126.5
C34	C33	C36	129.1	126.9
N31	C33	C36	126.3	126.9
C33	C36	O37	120.8	120.0
C33	C36	O38	123.4	120.0
O37	C36	O38	115.8	120.0
C36	O38	H26	109.5	114.0
H1	C1	H2	109.4	109.5
H1	C1	H3	109.5	109.5
H2	C1	H3	109.4	109.4
H4	C2	H5	109.5	109.4
H7	C11	H8	109.4	109.5
H9	C12	H10	109.5	109.4
H11	C13	H12	109.5	109.4
H13	C14	H14	109.4	109.5
H16	C20	H17	109.4	109.4

Torsion Angles for 2VJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O18	C17	C15	H15	166.8	120.0
C20	N19	C17	O18	2.8	360.0
O18	C17	N19	H21	182.8	180.0
C9	C15	C14	C13	63.3	60.0
C14	C13	C12	H9	173.9	300.0
C14	C13	C12	H10	293.4	180.0
C12	C13	C14	H11	239.8	120.0
C12	C13	C14	H12	120.2	239.9
H11	C13	C14	H12	240.4	120.0
C15	C14	C13	H11	60.7	180.0
C15	C14	C13	H12	180.3	60.0
C11	C9	C15	C14	297.9	299.9
C14	C15	C9	H6	58.8	60.0
C9	C15	C14	H15	119.4	120.0
C17	C15	C14	H15	239.9	240.0
H13	C14	C15	H14	119.7	120.0
C14	C13	C12	H11	120.2	240.0
C14	C13	C12	H12	239.8	120.1
C13	C12	C11	H7	66.5	180.0
C13	C12	C11	H8	185.9	60.0
H9	C12	C13	H10	240.4	120.0
H11	C13	C12	H12	119.7	240.0
C12	C11	C9	C15	58.4	60.0
C12	C11	C9	H6	297.4	300.0
C9	C11	C12	H7	239.7	120.0
C9	C11	C12	H8	120.3	240.0
H7	C11	C12	H8	240.6	120.0
C12	C11	C9	H7	120.3	240.0
C12	C11	C9	H8	239.7	120.0
C15	C9	C11	H6	121.0	120.0
C11	C9	C15	H15	57.3	60.0
H7	C11	C9	H8	119.3	239.9
C9	C15	C14	H13	303.1	300.0
C9	C15	C14	H14	183.4	180.0
C14	C15	C9	H15	240.5	239.9
C11	C9	C15	H6	239.0	239.9
C15	C9	C11	H7	298.0	180.0
C15	C9	C11	H8	178.7	300.1
C17	C15	C9	H15	121.7	120.0
C9	C7	N6	C5	178.8	180.0
C17	C15	C14	H13	63.7	60.0
C17	C15	C14	H14	303.9	300.0
C14	C15	C17	H15	120.2	120.1
C17	C15	C9	H6	300.0	300.0
C9	C15	C17	H15	238.4	240.0
N19	C17	C15	H15	348.6	299.9
C21	C20	N19	C17	280.6	180.0
C17	N19	C20	H16	159.6	60.0
C17	N19	C20	H17	41.6	300.0
C20	N19	C17	H21	180.0	180.0
C23	C22	C21	C26	1.6	0.3
C22	C23	C24	CL8	181.5	180.0
C22	C23	C24	C25	0.2	359.7
C22	C21	C20	N19	155.1	270.3
C20	C21	C22	C26	177.7	179.7
C22	C21	C20	H16	276.1	30.3
C22	C21	C20	H17	34.1	150.3
C22	C21	C26	C25	358.3	359.7
C22	C21	C26	H23	178.3	179.7
C24	C23	C22	H18	179.1	180.0
C22	C23	C24	H22	180.0	179.9
C25	C24	C23	CL8	178.7	179.7
C23	C24	C25	CL7	180.4	180.3
N8	C3	C2	H4	157.6	184.7
N8	C3	C2	H5	39.3	64.7
N8	C3	C4	H20	181.7	180.3
C1	C2	C3	C4	99.9	125.0
C3	C2	C1	H4	239.1	240.0
C3	C2	C1	H5	120.9	120.1
H1	C1	C2	H2	240.0	240.0
H1	C1	C2	H3	120.0	120.0
H2	C1	C2	H3	240.0	240.0
H4	C2	C1	H5	241.7	240.1
C3	C2	C1	H1	180.0	300.0
C3	C2	C1	H2	300.0	60.0
C3	C2	C1	H3	60.0	180.0
C1	C2	C3	H4	120.9	120.0
C1	C2	C3	H5	239.1	240.0
C2	C3	C4	C5	180.3	180.0
C2	C3	C4	H20	0.3	0.0
H4	C2	C3	H5	118.3	120.0
C7	N6	C5	C4	359.5	359.7
C7	N6	C5	S29	179.8	179.7
C22	C21	C20	C26	182.3	180.3
N19	C20	C21	H16	239.0	240.0
N19	C20	C21	H17	121.0	120.0
C21	C20	N19	H21	100.6	360.0
C20	C21	C26	C25	180.8	180.0
C20	C21	C26	H23	0.8	360.0
H16	C20	C21	H17	242.0	240.0
O18	C17	N19	C20	2.8	360.0
C17	N19	C20	H21	180.0	180.0
N19	C20	C21	C26	332.8	90.0
C21	C20	N19	H16	121.0	120.0
C21	C20	N19	H17	239.0	240.0
H16	C20	N19	H17	118.0	120.0
C26	C21	C20	N19	332.8	90.0
C26	C21	C20	H16	93.7	210.0
C26	C21	C20	H17	211.8	330.0
C21	C26	C25	CL7	180.3	180.0
C4	C3	C2	H4	339.1	5.0
C4	C3	C2	H5	220.8	245.0
N6	C5	C4	C3	358.8	0.0
C3	C4	C5	S29	178.5	180.0
C5	C4	C3	H20	180.0	180.0
C23	C24	CL8	C25	178.8	179.7
CL8	C24	C25	CL7	359.1	0.0
C23	C24	C25	CL8	181.3	180.3
C21	C26	C25	C24	1.0	360.0
C26	C25	C24	CL7	179.3	180.0
C21	C26	C25	H23	180.0	180.0
C26	C25	C24	CL8	178.4	180.0
C24	C25	C26	CL7	180.7	180.0
CL7	C25	C24	CL8	359.1	0.0
C3	C4	C5	N6	358.8	0.0
C4	C5	N6	S29	179.8	180.0
N6	C5	C4	H20	178.8	180.0
C3	C4	C5	H20	180.0	180.0
N6	C5	C4	S29	180.2	180.0
N6	C5	S29	C4	179.8	180.0
S29	C5	C4	H20	358.6	360.0
C5	S29	C30	N31	214.0	180.0
N6	C5	S29	C30	26.6	360.0
S29	C30	N31	C33	181.0	180.0
S29	C30	N31	H24	1.0	0.0
N35	C30	N31	H24	179.8	180.2
N35	C34	C33	C36	179.1	179.9
C30	N31	C33	C36	180.8	180.1
C30	N31	C33	C34	0.5	359.6
N31	C33	C34	C36	180.4	180.5
C34	C33	C36	O37	359.5	0.2
C34	C33	C36	O38	180.3	180.1
C30	N31	C33	H24	180.0	180.0
C34	C33	N31	C36	179.6	179.5
N31	C33	C36	O37	179.1	179.5
N31	C33	C36	O38	359.8	359.5
O37	C36	C33	O38	179.3	180.1
C33	C36	O38	H26	179.3	180.1
C33	C36	O37	O38	180.7	179.9
O37	C36	O38	H26	360.0	0.0
C33	C36	O38	O37	179.3	180.1
H1	C1	C2	C3	180.0	300.0
C2	C1	H1	H2	120.0	120.0
C2	C1	H1	H3	240.0	239.9
H1	C1	C2	H4	300.9	60.1
H1	C1	C2	H5	59.1	180.0
H2	C1	H1	H3	120.0	120.0
H2	C1	C2	C3	300.0	60.0
C2	C1	H2	H1	240.0	240.0
C2	C1	H2	H3	120.0	120.0
H2	C1	C2	H4	60.9	180.1
H2	C1	C2	H5	179.1	300.0
H1	C1	H2	H3	240.0	240.0
H3	C1	C2	C3	60.0	180.0
C2	C1	H3	H1	120.0	120.1
C2	C1	H3	H2	240.0	240.0
H3	C1	C2	H4	180.8	300.0
H3	C1	C2	H5	299.1	59.9
H1	C1	H3	H2	120.0	120.0
C1	C2	H4	C3	234.5	240.0
H4	C2	C1	H1	300.9	60.1
H4	C2	C1	H2	60.9	180.1
H4	C2	C1	H3	180.8	300.0
C1	C2	H4	H5	117.3	119.9
H4	C2	C3	C4	339.1	5.0
C3	C2	H4	H5	242.8	240.0
C1	C2	H5	C3	125.5	120.0
H5	C2	C1	H1	59.1	180.0
H5	C2	C1	H2	179.1	300.0
H5	C2	C1	H3	299.1	59.9
C1	C2	H5	H4	242.7	240.1
H5	C2	C3	C4	220.8	245.0
C3	C2	H5	H4	117.2	120.0
H6	C9	C15	C14	58.8	60.0
C11	C9	H6	C15	120.4	120.0
H6	C9	C11	H7	177.1	60.0
H6	C9	C11	H8	57.7	180.0
H6	C9	C15	H15	178.3	180.1
C12	C11	H7	H8	119.1	240.0
H7	C11	C9	C15	298.0	180.0
H7	C11	C9	H6	177.1	60.0
C9	C11	H7	H8	241.0	120.1
C12	C11	H8	H7	240.9	120.0
H8	C11	C9	C15	178.7	300.1
H8	C11	C9	H6	57.7	180.0
C9	C11	H8	H7	119.0	240.0
C13	C12	H9	H10	119.4	240.0
H9	C12	C13	H11	53.7	60.0
H9	C12	C13	H12	294.0	179.9
H9	C12	C11	H7	306.3	300.0
H9	C12	C11	H8	65.6	180.0
C13	C12	H10	H9	240.6	120.0
H10	C12	C13	H11	173.3	300.0
H10	C12	C13	H12	53.6	60.0
H10	C12	C11	H7	186.7	60.0
H10	C12	C11	H8	306.1	300.0
C14	C13	H11	H12	119.5	240.0
H11	C13	C12	H9	53.7	60.0
H11	C13	C12	H10	173.3	300.0
C12	C13	H11	H12	240.5	120.0
C14	C13	H12	H11	240.5	120.0
H12	C13	C12	H9	294.0	179.9
H12	C13	C12	H10	53.6	60.0
C12	C13	H12	H11	119.5	240.0
H13	C14	C13	H11	180.8	300.0
H13	C14	C13	H12	300.5	180.0
C15	C14	H13	H14	240.4	240.0
H13	C14	C15	H15	183.8	180.0
H14	C14	C13	H11	300.6	60.1
H14	C14	C13	H12	60.2	300.1
C15	C14	H14	H13	119.6	120.0
H14	C14	C15	H15	64.1	60.0
C9	C15	H15	C14	242.0	240.0
H15	C15	C14	H13	183.8	180.0
H15	C15	C14	H14	64.1	60.0
H15	C15	C9	H6	178.3	180.1
H16	C20	N19	C17	159.6	60.0
C21	C20	H16	N19	233.9	240.0
H16	C20	C21	C26	93.7	210.0
C21	C20	H16	H17	116.9	120.0
N19	C20	H16	H17	243.0	240.0
H16	C20	N19	H21	339.6	239.9
H17	C20	N19	C17	41.6	300.0
C21	C20	H17	N19	126.1	120.0
H17	C20	C21	C26	211.8	330.0
C21	C20	H17	H16	243.1	240.0
N19	C20	H17	H16	117.0	120.0
H17	C20	N19	H21	221.6	120.0
H18	C22	C23	C24	179.1	180.0
H18	C22	C23	H22	359.1	360.0
H18	C22	C21	C26	181.7	180.2
H19	C34	C33	C36	359.1	359.9
C3	C4	H20	C5	180.0	180.0
H20	C4	C5	S29	358.6	360.0
C20	N19	H21	C17	180.0	180.0
H21	N19	C20	H16	339.6	239.9
H21	N19	C20	H17	221.6	120.0
C22	C23	H22	C24	180.0	180.1
H22	C23	C22	H18	359.1	360.0
H22	C23	C24	CL8	1.6	0.1
H22	C23	C24	C25	180.2	179.8
C21	C26	H23	C25	180.0	180.0
H23	C26	C25	CL7	0.3	0.0
C30	N31	H24	C33	180.0	180.0
H24	N31	C33	C36	0.8	0.1