PDB Chemical Component 2VF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2VF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O2 |
C13 |
1.222 |
1.213 |
C12 |
C13 |
1.500 |
1.508 |
C12 |
N |
1.473 |
1.464 |
C13 |
N1 |
1.337 |
1.348 |
C2 |
C3 |
1.385 |
1.391 |
C2 |
C1 |
1.388 |
1.377 |
N |
C3 |
1.345 |
1.379 |
N |
C11 |
1.344 |
1.366 |
C3 |
C4 |
1.483 |
1.408 |
C1 |
C |
1.382 |
1.389 |
C10 |
C11 |
1.504 |
1.512 |
C10 |
C8 |
1.540 |
1.532 |
C11 |
C5 |
1.478 |
1.346 |
C |
CL |
1.785 |
1.736 |
C |
C14 |
1.389 |
1.377 |
C4 |
C5 |
1.467 |
1.460 |
C4 |
C14 |
1.388 |
1.396 |
C8 |
C9 |
1.506 |
1.506 |
C8 |
C7 |
1.530 |
1.531 |
C5 |
C6 |
1.492 |
1.507 |
O1 |
C9 |
1.236 |
1.209 |
C9 |
O |
1.317 |
1.343 |
C6 |
C7 |
1.523 |
1.534 |
N1 |
H1 |
1.000 |
0.970 |
N1 |
H2 |
1.000 |
0.970 |
C12 |
H3 |
1.100 |
1.090 |
C12 |
H4 |
1.100 |
1.090 |
C2 |
H5 |
1.080 |
1.081 |
C1 |
H6 |
1.080 |
1.080 |
C10 |
H7 |
1.100 |
1.090 |
C10 |
H8 |
1.100 |
1.090 |
C8 |
H9 |
1.100 |
1.090 |
O |
H10 |
0.950 |
0.967 |
C7 |
H11 |
1.100 |
1.090 |
C7 |
H12 |
1.099 |
1.089 |
C6 |
H13 |
1.100 |
1.090 |
C6 |
H14 |
1.100 |
1.089 |
C14 |
H15 |
1.080 |
1.080 |
Bond Angles for 2VF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C13 |
N1 |
122.8 |
120.1 |
C12 |
N |
C3 |
124.3 |
125.1 |
C12 |
N |
C11 |
124.9 |
125.0 |
N |
C12 |
H3 |
108.3 |
109.4 |
N |
C12 |
H4 |
108.2 |
109.5 |
C13 |
N1 |
H1 |
120.0 |
119.9 |
C13 |
N1 |
H2 |
120.0 |
120.0 |
C2 |
C3 |
C4 |
117.3 |
119.4 |
C2 |
C1 |
C |
122.7 |
120.6 |
C1 |
C2 |
H5 |
120.4 |
120.0 |
C2 |
C1 |
H6 |
118.6 |
119.7 |
C3 |
N |
C11 |
110.8 |
109.9 |
N |
C3 |
C4 |
110.2 |
107.3 |
N |
C11 |
C5 |
109.7 |
109.7 |
C3 |
C4 |
C5 |
104.0 |
105.9 |
C3 |
C4 |
C14 |
122.2 |
119.9 |
C1 |
C |
CL |
114.6 |
119.8 |
C1 |
C |
C14 |
121.6 |
120.3 |
C |
C1 |
H6 |
118.6 |
119.7 |
C10 |
C11 |
C5 |
123.1 |
123.6 |
C10 |
C8 |
C9 |
112.5 |
109.5 |
C10 |
C8 |
C7 |
113.7 |
109.5 |
C8 |
C10 |
H7 |
109.5 |
109.7 |
C8 |
C10 |
H8 |
109.5 |
109.6 |
C10 |
C8 |
H9 |
107.7 |
109.5 |
C11 |
C5 |
C6 |
124.3 |
124.7 |
C |
C14 |
H15 |
121.5 |
120.1 |
C4 |
C14 |
H15 |
121.5 |
120.2 |
C9 |
C8 |
C7 |
106.5 |
109.5 |
C8 |
C9 |
O |
115.8 |
120.0 |
C9 |
C8 |
H9 |
108.2 |
109.5 |
C7 |
C8 |
H9 |
107.9 |
109.4 |
C8 |
C7 |
H11 |
108.5 |
109.5 |
C8 |
C7 |
H12 |
108.5 |
109.5 |
C5 |
C6 |
H13 |
110.1 |
109.6 |
C5 |
C6 |
H14 |
110.1 |
109.8 |
O1 |
C9 |
O |
119.7 |
120.0 |
C9 |
O |
H10 |
109.5 |
117.0 |
C6 |
C7 |
H11 |
108.5 |
109.5 |
C6 |
C7 |
H12 |
108.5 |
109.5 |
H1 |
N1 |
H2 |
120.0 |
120.0 |
H3 |
C12 |
H4 |
109.5 |
109.5 |
H7 |
C10 |
H8 |
109.5 |
109.8 |
H11 |
C7 |
H12 |
109.5 |
109.5 |
H13 |
C6 |
H14 |
109.5 |
109.7 |
Torsion Angles for 2VF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C13 |
N1 |
H1 |
360.0 |
0.0 |
O2 |
C13 |
N1 |
H2 |
180.0 |
180.0 |
C12 |
C13 |
N1 |
H1 |
180.8 |
180.3 |
C12 |
C13 |
N1 |
H2 |
0.9 |
0.3 |
C3 |
N |
C12 |
C11 |
178.7 |
180.3 |
C12 |
N |
C3 |
C4 |
181.1 |
180.1 |
C12 |
N |
C11 |
C5 |
178.4 |
179.9 |
H3 |
C12 |
N |
H4 |
118.6 |
120.0 |
H1 |
N1 |
C13 |
H2 |
180.0 |
180.0 |
C2 |
C3 |
N |
C11 |
181.1 |
180.3 |
N |
C3 |
C2 |
C4 |
178.7 |
180.0 |
C2 |
C3 |
C4 |
C5 |
179.5 |
179.8 |
C2 |
C3 |
C4 |
C14 |
359.7 |
0.0 |
C1 |
C2 |
C3 |
C4 |
0.9 |
360.0 |
C2 |
C1 |
C |
CL |
180.1 |
179.9 |
C2 |
C1 |
C |
C14 |
0.7 |
360.0 |
C |
C1 |
C2 |
H6 |
180.0 |
180.1 |
C12 |
N |
C3 |
C11 |
181.2 |
179.7 |
C3 |
N |
C12 |
H3 |
153.5 |
330.0 |
C3 |
N |
C12 |
H4 |
34.9 |
210.0 |
C2 |
C3 |
N |
C4 |
181.2 |
180.0 |
C3 |
N |
C11 |
C5 |
359.6 |
359.7 |
N |
C3 |
C4 |
C5 |
0.6 |
359.8 |
N |
C3 |
C4 |
C14 |
180.7 |
180.0 |
C12 |
N |
C11 |
C3 |
178.8 |
180.3 |
C11 |
N |
C12 |
H3 |
334.8 |
149.7 |
C11 |
N |
C12 |
H4 |
216.2 |
29.7 |
C11 |
N |
C3 |
C4 |
359.9 |
0.3 |
C10 |
C11 |
N |
C5 |
180.6 |
180.0 |
N |
C11 |
C5 |
C6 |
179.6 |
179.9 |
C4 |
C3 |
N |
C11 |
359.9 |
0.3 |
C3 |
C4 |
C14 |
H15 |
179.9 |
180.0 |
C |
C1 |
C2 |
H5 |
178.9 |
180.1 |
C2 |
C1 |
C |
H6 |
180.0 |
179.9 |
C1 |
C |
C14 |
H15 |
180.0 |
180.0 |
N |
C11 |
C10 |
C5 |
179.4 |
180.0 |
C10 |
C11 |
C5 |
C6 |
359.1 |
359.9 |
C8 |
C10 |
C11 |
C5 |
352.3 |
343.1 |
C9 |
C8 |
C10 |
C7 |
121.3 |
120.0 |
C10 |
C8 |
C9 |
O |
161.7 |
180.0 |
C9 |
C8 |
C10 |
H9 |
240.8 |
240.0 |
C7 |
C8 |
C10 |
H9 |
119.6 |
120.0 |
C10 |
C8 |
C7 |
H11 |
55.1 |
49.9 |
C10 |
C8 |
C7 |
H12 |
174.1 |
170.0 |
H7 |
C10 |
C8 |
H8 |
120.0 |
120.6 |
C3 |
C4 |
C5 |
C11 |
359.2 |
0.0 |
C11 |
C5 |
C6 |
H13 |
99.2 |
224.0 |
C11 |
C5 |
C6 |
H14 |
220.0 |
103.4 |
C1 |
C |
CL |
C14 |
180.6 |
180.0 |
CL |
C |
C1 |
H6 |
0.1 |
0.0 |
CL |
C |
C14 |
H15 |
0.6 |
0.0 |
C1 |
C |
C14 |
CL |
179.4 |
180.0 |
C14 |
C |
C1 |
H6 |
180.7 |
180.1 |
C4 |
C14 |
C |
H15 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C14 |
180.2 |
180.3 |
C4 |
C5 |
C6 |
H13 |
277.7 |
43.7 |
C4 |
C5 |
C6 |
H14 |
38.5 |
283.1 |
C3 |
C4 |
C14 |
C5 |
179.8 |
179.7 |
C1 |
C |
C14 |
C4 |
360.0 |
0.0 |
C |
C14 |
C4 |
H15 |
180.0 |
180.0 |
C10 |
C8 |
C9 |
C7 |
234.7 |
239.9 |
C9 |
C8 |
C10 |
H7 |
39.9 |
50.6 |
C9 |
C8 |
C10 |
H8 |
279.9 |
289.9 |
C10 |
C8 |
C9 |
H9 |
118.9 |
120.0 |
C7 |
C8 |
C9 |
H9 |
244.2 |
240.1 |
C9 |
C8 |
C7 |
H11 |
290.6 |
289.9 |
C9 |
C8 |
C7 |
H12 |
49.5 |
50.0 |
O1 |
C9 |
C8 |
O |
180.5 |
180.0 |
C8 |
C9 |
O |
H10 |
180.5 |
180.0 |
C10 |
C8 |
C7 |
C9 |
124.6 |
120.0 |
C7 |
C8 |
C10 |
H7 |
278.7 |
290.5 |
C7 |
C8 |
C10 |
H8 |
158.6 |
169.9 |
C10 |
C8 |
C7 |
H9 |
240.5 |
240.0 |
C7 |
C8 |
C9 |
O |
287.0 |
300.1 |
C9 |
C8 |
C7 |
H9 |
116.0 |
120.0 |
C6 |
C7 |
C8 |
H11 |
239.5 |
240.1 |
C6 |
C7 |
C8 |
H12 |
120.5 |
120.0 |
H11 |
C7 |
C8 |
H12 |
241.1 |
239.9 |
C3 |
C4 |
C5 |
C6 |
180.5 |
180.3 |
C5 |
C6 |
C7 |
H11 |
290.9 |
289.6 |
C5 |
C6 |
C7 |
H12 |
172.0 |
169.5 |
H13 |
C6 |
C5 |
H14 |
239.1 |
120.5 |
O1 |
C9 |
C8 |
C7 |
107.5 |
120.1 |
C8 |
C9 |
O1 |
O |
179.5 |
180.0 |
O1 |
C9 |
C8 |
H9 |
223.3 |
240.0 |
O1 |
C9 |
O |
H10 |
0.0 |
360.0 |
O |
C9 |
C8 |
C7 |
287.0 |
300.1 |
O |
C9 |
C8 |
H9 |
42.8 |
60.0 |
C11 |
C5 |
C6 |
C7 |
339.6 |
343.6 |
C6 |
C7 |
C8 |
H9 |
54.1 |
50.0 |
C8 |
C7 |
C6 |
H11 |
120.5 |
119.9 |
C8 |
C7 |
C6 |
H12 |
239.5 |
240.0 |
H11 |
C7 |
C6 |
H12 |
118.9 |
120.1 |
C13 |
N1 |
H1 |
H2 |
180.0 |
180.0 |
C13 |
N1 |
H2 |
H1 |
180.0 |
180.0 |
H3 |
C12 |
N |
C3 |
153.5 |
330.0 |
H3 |
C12 |
N |
C11 |
334.8 |
149.7 |
N |
C12 |
H3 |
H4 |
242.2 |
240.0 |
H4 |
C12 |
N |
C3 |
34.9 |
210.0 |
H4 |
C12 |
N |
C11 |
216.2 |
29.7 |
N |
C12 |
H4 |
H3 |
117.8 |
120.0 |
H5 |
C2 |
C3 |
C4 |
180.9 |
180.0 |
H5 |
C2 |
C1 |
C |
178.9 |
180.1 |
H5 |
C2 |
C1 |
H6 |
358.9 |
360.0 |
C2 |
C1 |
H6 |
C |
180.0 |
180.1 |
H6 |
C1 |
C2 |
H5 |
358.9 |
360.0 |
H6 |
C1 |
C |
CL |
0.1 |
0.0 |
H6 |
C1 |
C |
C14 |
180.7 |
180.1 |
H7 |
C10 |
C11 |
C5 |
112.3 |
102.9 |
H7 |
C10 |
C8 |
C9 |
39.9 |
50.6 |
H7 |
C10 |
C8 |
C7 |
278.7 |
290.5 |
C8 |
C10 |
H7 |
H8 |
240.0 |
239.5 |
H7 |
C10 |
C8 |
H9 |
159.1 |
170.5 |
H8 |
C10 |
C11 |
C5 |
232.3 |
223.5 |
H8 |
C10 |
C8 |
C9 |
279.9 |
289.9 |
H8 |
C10 |
C8 |
C7 |
158.6 |
169.9 |
C8 |
C10 |
H8 |
H7 |
120.0 |
120.6 |
H8 |
C10 |
C8 |
H9 |
39.1 |
49.9 |
C10 |
C8 |
H9 |
C9 |
238.1 |
240.0 |
C10 |
C8 |
H9 |
C7 |
123.2 |
120.0 |
H9 |
C8 |
C10 |
H7 |
159.1 |
170.5 |
H9 |
C8 |
C10 |
H8 |
39.1 |
49.9 |
C9 |
C8 |
H9 |
C7 |
245.1 |
240.0 |
H9 |
C8 |
C9 |
O |
42.8 |
60.0 |
H9 |
C8 |
C7 |
H11 |
174.6 |
169.9 |
H9 |
C8 |
C7 |
H12 |
293.5 |
290.0 |
H11 |
C7 |
C8 |
H9 |
174.6 |
169.9 |
C8 |
C7 |
H11 |
H12 |
118.3 |
120.1 |
C6 |
C7 |
H11 |
H12 |
241.7 |
239.9 |
H12 |
C7 |
C8 |
H9 |
293.5 |
290.0 |
C8 |
C7 |
H12 |
H11 |
241.7 |
239.9 |
C6 |
C7 |
H12 |
H11 |
118.3 |
120.0 |
C5 |
C6 |
H13 |
H14 |
121.2 |
239.4 |
H13 |
C6 |
C7 |
H11 |
171.4 |
49.2 |
H13 |
C6 |
C7 |
H12 |
52.4 |
289.1 |
C5 |
C6 |
H14 |
H13 |
238.8 |
120.5 |
H14 |
C6 |
C7 |
H11 |
50.5 |
169.7 |
H14 |
C6 |
C7 |
H12 |
291.6 |
49.7 |