PDB Chemical Component 2TM

Ideal Model

Chemical Description

Name 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine
Synonyms CMPcPP
Formula C10 H18 N3 O13 P3
Formal charge 0
Molecular weight 481.184 g/mol
Component type NON-POLYMER

Chemical features

Atom count 47
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Bond count 48
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O
InChI descriptor InChI=1S/C10H18N3O13P3/c11-6-1-2-13(10(16)12-6)9-8(15)7(14)5(25-9)3-24-27(17,18)4-28(19,20)26-29(21,22)23/h1-2,5,7-9,14-15H,3-4H2,(H,17,18)(H,19,20)(H2,11,12,16)(H2,21,22,23)/t5-,7-,8-,9-/m1/s1
InChIKey descriptor STGUOVSTMBLHFT-ZOQUXTDFSA-N

Status Information

Last modified 2020-06-17
Created 2014-01-30
Release status REL
Model PDB code 4OIO
Processing site RCSB