PDB Chemical Component 2TM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2TM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N4 |
C4 |
1.433 |
1.376 |
| N3 |
C4 |
1.341 |
1.326 |
| N3 |
C2 |
1.346 |
1.332 |
| O2 |
C2 |
1.239 |
1.220 |
| C4 |
C5 |
1.394 |
1.410 |
| C2 |
N1 |
1.353 |
1.345 |
| C5 |
C6 |
1.395 |
1.354 |
| N1 |
C6 |
1.347 |
1.362 |
| N1 |
C1' |
1.488 |
1.465 |
| O2' |
C2' |
1.388 |
1.430 |
| C2' |
C1' |
1.469 |
1.553 |
| C2' |
C3' |
1.459 |
1.547 |
| C1' |
O4' |
1.424 |
1.444 |
| C3' |
O3' |
1.385 |
1.429 |
| C3' |
C4' |
1.462 |
1.541 |
| O4' |
C4' |
1.402 |
1.438 |
| C4' |
C5' |
1.477 |
1.530 |
| C5' |
O5' |
1.383 |
1.429 |
| O5' |
PA |
1.589 |
1.610 |
| O1A |
PA |
1.582 |
1.480 |
| PA |
O2A |
1.499 |
1.610 |
| PA |
C1 |
1.829 |
1.823 |
| O2B |
PB |
1.507 |
1.480 |
| C1 |
PB |
1.831 |
1.823 |
| PB |
O3B |
1.587 |
1.610 |
| PB |
O1B |
1.570 |
1.610 |
| O3B |
PG |
1.594 |
1.610 |
| PG |
O1G |
1.513 |
1.480 |
| PG |
O2G |
1.512 |
1.611 |
| PG |
O3G |
1.523 |
1.610 |
| C5' |
H1 |
1.101 |
1.091 |
| C5' |
H2 |
1.100 |
1.089 |
| C4' |
H3 |
1.100 |
1.089 |
| C3' |
H4 |
1.099 |
1.090 |
| O3' |
H5 |
0.949 |
0.967 |
| C2' |
H6 |
1.100 |
1.090 |
| O2' |
H7 |
0.950 |
0.967 |
| C1' |
H8 |
1.100 |
1.091 |
| C5 |
H9 |
1.080 |
1.080 |
| C6 |
H10 |
1.080 |
1.080 |
| O3G |
H11 |
0.950 |
0.967 |
| O2G |
H12 |
0.950 |
0.968 |
| O1B |
H13 |
0.950 |
0.967 |
| O2A |
H14 |
0.950 |
0.967 |
| N4 |
H15 |
1.000 |
0.971 |
| N4 |
H16 |
1.000 |
0.970 |
| C1 |
H17 |
1.100 |
1.091 |
| C1 |
H18 |
1.100 |
1.090 |
Bond Angles for 2TM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
H9 |
120.8 |
120.5 |
| C6 |
C5 |
H9 |
120.8 |
120.5 |
| C5 |
C6 |
H10 |
119.9 |
120.3 |
| N1 |
C6 |
H10 |
119.9 |
120.4 |
| N1 |
C1' |
H8 |
107.2 |
110.6 |
| O2' |
C2' |
C1' |
109.9 |
110.9 |
| O2' |
C2' |
H6 |
110.5 |
110.8 |
| C1' |
C2' |
H6 |
109.3 |
110.9 |
| C2' |
C1' |
H8 |
107.4 |
110.6 |
| C2' |
C3' |
H4 |
109.1 |
110.6 |
| O3' |
C3' |
H4 |
110.1 |
110.4 |
| C3' |
O3' |
H5 |
109.5 |
114.0 |
| C3' |
C4' |
H3 |
107.3 |
109.9 |
| O4' |
C4' |
H3 |
108.0 |
109.9 |
| C4' |
C5' |
H1 |
109.1 |
109.5 |
| C4' |
C5' |
H2 |
109.1 |
109.5 |
| C5' |
O5' |
PA |
119.4 |
123.0 |
| O5' |
PA |
O2A |
109.3 |
109.5 |
| O5' |
PA |
C1 |
110.0 |
109.5 |
| O1A |
PA |
O2A |
109.4 |
109.5 |
| O1A |
PA |
C1 |
109.6 |
109.5 |
| O2A |
PA |
C1 |
109.5 |
109.5 |
| PA |
O2A |
H14 |
109.5 |
114.0 |
| PA |
C1 |
H17 |
107.0 |
109.5 |
| PA |
C1 |
H18 |
107.0 |
109.5 |
| PB |
O1B |
H13 |
109.5 |
114.0 |
| O1G |
PG |
O2G |
109.0 |
109.5 |
| PG |
O2G |
H12 |
109.5 |
114.0 |
| PG |
O3G |
H11 |
109.5 |
114.0 |
| H1 |
C5' |
H2 |
109.5 |
109.5 |
| H15 |
N4 |
H16 |
120.0 |
120.0 |
| H17 |
C1 |
H18 |
109.5 |
109.4 |
Torsion Angles for 2TM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N4 |
C4 |
C5 |
H9 |
359.9 |
0.3 |
| N3 |
C4 |
C5 |
H9 |
180.0 |
179.7 |
| C6 |
C5 |
C4 |
H9 |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
H10 |
180.1 |
180.3 |
| C2 |
N1 |
C6 |
H10 |
179.8 |
180.0 |
| C2 |
N1 |
C1' |
H8 |
309.9 |
172.0 |
| C4 |
C5 |
C6 |
H9 |
180.0 |
180.2 |
| N1 |
C6 |
C5 |
H10 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
H9 |
180.1 |
180.0 |
| C5 |
C6 |
N1 |
H10 |
180.0 |
180.0 |
| C6 |
N1 |
C1' |
H8 |
129.8 |
352.0 |
| N1 |
C1' |
C2' |
H6 |
352.2 |
37.4 |
| C2' |
C1' |
N1 |
H8 |
118.0 |
123.0 |
| C1' |
C2' |
O2' |
H6 |
120.7 |
123.6 |
| O2' |
C2' |
C1' |
H8 |
348.7 |
36.8 |
| O2' |
C2' |
C3' |
H4 |
142.2 |
102.2 |
| N1 |
C1' |
C2' |
H8 |
242.1 |
237.0 |
| O2' |
C2' |
C1' |
H6 |
238.6 |
236.5 |
| C1' |
C2' |
C3' |
H4 |
261.7 |
220.5 |
| O3' |
C3' |
C2' |
H4 |
237.3 |
237.4 |
| C2' |
C3' |
O3' |
H5 |
180.0 |
65.2 |
| C2' |
C3' |
C4' |
H3 |
101.2 |
117.5 |
| C1' |
O4' |
C4' |
H3 |
249.7 |
266.9 |
| C2' |
C3' |
O3' |
H4 |
122.1 |
122.7 |
| O3' |
C3' |
C4' |
H3 |
339.1 |
358.8 |
| O4' |
C4' |
C3' |
H3 |
242.4 |
240.5 |
| C3' |
C4' |
C5' |
H1 |
97.7 |
64.7 |
| C3' |
C4' |
C5' |
H2 |
217.3 |
304.7 |
| C3' |
C4' |
O4' |
H3 |
117.2 |
119.5 |
| O4' |
C4' |
C5' |
H1 |
333.0 |
306.7 |
| O4' |
C4' |
C5' |
H2 |
92.6 |
186.7 |
| C4' |
C5' |
O5' |
PA |
197.1 |
180.0 |
| H1 |
C5' |
C4' |
H2 |
240.4 |
120.0 |
| C5' |
O5' |
PA |
O2A |
319.5 |
65.0 |
| C5' |
O5' |
PA |
C1 |
79.8 |
185.0 |
| O1A |
PA |
O5' |
O2A |
240.5 |
240.0 |
| O1A |
PA |
O5' |
C1 |
120.2 |
120.0 |
| O2A |
PA |
O5' |
C1 |
239.8 |
240.0 |
| O5' |
PA |
O2A |
H14 |
240.7 |
60.0 |
| O5' |
PA |
C1 |
H17 |
189.8 |
60.0 |
| O5' |
PA |
C1 |
H18 |
307.1 |
300.0 |
| O5' |
PA |
O1A |
O2A |
119.4 |
120.0 |
| O5' |
PA |
O1A |
C1 |
239.5 |
240.0 |
| O2A |
PA |
O1A |
C1 |
120.1 |
120.0 |
| O1A |
PA |
O2A |
H14 |
0.0 |
179.9 |
| O1A |
PA |
C1 |
H17 |
70.0 |
300.0 |
| O1A |
PA |
C1 |
H18 |
187.3 |
180.1 |
| O5' |
PA |
O2A |
C1 |
120.6 |
120.0 |
| O1A |
PA |
O2A |
C1 |
239.8 |
240.0 |
| O2A |
PA |
C1 |
H17 |
309.9 |
180.0 |
| O2A |
PA |
C1 |
H18 |
67.2 |
60.1 |
| O5' |
PA |
C1 |
O2A |
239.9 |
240.0 |
| O1A |
PA |
C1 |
O2A |
120.0 |
120.0 |
| C1 |
PA |
O2A |
H14 |
120.2 |
300.0 |
| H17 |
C1 |
PA |
H18 |
242.7 |
119.9 |
| O2B |
PB |
O1B |
H13 |
360.0 |
180.0 |
| O5' |
PA |
C1 |
PB |
68.5 |
180.0 |
| C1 |
PB |
O1B |
H13 |
118.5 |
300.0 |
| O3B |
PG |
O2G |
H12 |
240.5 |
300.0 |
| O3B |
PG |
O3G |
H11 |
119.3 |
180.0 |
| O1G |
PG |
O2G |
H12 |
360.0 |
180.1 |
| O1G |
PG |
O3G |
H11 |
360.0 |
300.0 |
| O2G |
PG |
O3G |
H11 |
240.6 |
60.0 |
| C4' |
C5' |
H1 |
H2 |
119.3 |
240.0 |
| H1 |
C5' |
O5' |
PA |
76.8 |
300.0 |
| C4' |
C5' |
H2 |
H1 |
240.7 |
120.0 |
| H2 |
C5' |
O5' |
PA |
317.3 |
60.0 |
| H3 |
C4' |
C5' |
H1 |
215.7 |
185.7 |
| H3 |
C4' |
C5' |
H2 |
335.3 |
65.7 |
| H4 |
C3' |
O3' |
H5 |
57.9 |
302.5 |
| H4 |
C3' |
C4' |
H3 |
218.1 |
236.4 |
| H5 |
O3' |
C3' |
H4 |
57.9 |
302.5 |
| O2' |
C2' |
H6 |
C1' |
121.1 |
123.6 |
| H6 |
C2' |
C1' |
H8 |
110.1 |
160.3 |
| H6 |
C2' |
C3' |
H4 |
18.4 |
338.6 |
| H7 |
O2' |
C2' |
C1' |
180.0 |
180.0 |
| H7 |
O2' |
C2' |
H6 |
59.3 |
56.4 |
| H8 |
C1' |
C2' |
H6 |
110.1 |
160.3 |
| H9 |
C5 |
C6 |
H10 |
0.1 |
0.0 |
| H10 |
C6 |
C5 |
H9 |
0.1 |
0.0 |
| H14 |
O2A |
PA |
C1 |
120.2 |
300.0 |
| PA |
C1 |
H17 |
H18 |
115.7 |
240.0 |
| PA |
C1 |
H18 |
H17 |
244.3 |
119.9 |