Atom Nomenclature for 2T1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2T1

Atom Name (V3) Atom Name (V2)
N1 N1
N3 N3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C10 C10
C13 C13
C15 C15
C17 C17
C21 C21
O3 O3
O2 O2
C16 C16
C19 C19
C18 C18
C14 C14
O1 O1
C11 C11
C9 C9
C3 C3
C2 C2
C1 C1
C12 C12
F1 F1
F3 F3
F2 F2
HN3 HN3
H5 H5
H6 H6
H7 H7
H8 H8
H8A H8A
H10 H10
H10A H10A
H17 H17
HO3 HO3
H16 H16
H19 H19
H18 H18
H11 H11
H11A H11A
H9 H9
H9A H9A
H2 H2
H1 H1