Atom Nomenclature for 2S1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2S1

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
O4 O4
C7 C7
C8 C8
C9 C9
C12 C12
C14 C14
C15 C15
C16 C16
C19 C19
C20 C20
C21 C21
C22 C22
C24 C24
C27 C27
C30 C30
C32 C32
C34 C34
C35 C35
N1 N1
C5 C5
C6 C6
BR BR
O11 O11
O13 O13
C17 C17
C18 C18
O23 O23
C25 C25
C26 C26
C28 C28
C29 C29
O31 O31
N33 N33
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
CL2 CL2
CL1 CL1
C44 C44
O45 O45
C46 C46
C47 C47
N48 N48
C49 C49
C50 C50
C51 C51
C52 C52
C53 C53
C54 C54
C55 C55
C56 C56
O57 O57
O58 O58
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40