Atom Nomenclature for 2RC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2RC

Atom Name (V3) Atom Name (V2)
F01 F01
C02 C02
C03 C03
N04 N04
C05 C05
N06 N06
C07 C07
N08 N08
C09 C09
N10 N10
C11 C11
N12 N12
C13 C13
O14 O14
C15 C15
O16 O16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
O23 O23
P24 P24
O25 O25
O26 O26
O27 O27
N28 N28
C29 C29
C30 C30
C31 C31
O32 O32
C33 C33
C34 C34
O35 O35
C36 C36
C37 C37
O38 O38
C39 C39
C40 C40
H031 H031
H081 H081
H181 H181
H191 H191
H203 H203
H202 H202
H201 H201
H212 H212
H213 H213
H211 H211
H222 H222
H221 H221
H1 H1
H2 H2
H281 H281
H301 H301
H333 H333
H331 H331
H332 H332
H363 H363
H362 H362
H361 H361
H391 H391
H392 H392
H393 H393
H401 H401