Atom Nomenclature for 2QR

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2QR

Atom Name (V3) Atom Name (V2)
O01 O01
C02 C02
C03 C03
O04 O04
C05 C05
C06 C06
O07 O07
P08 P08
O09 O09
O10 O10
P11 P11
O12 O12
O13 O13
C14 C14
C15 C15
O16 O16
O17 O17
C18 C18
C19 C19
C20 C20
O21 O21
N22 N22
C23 C23
C24 C24
C25 C25
O26 O26
C27 C27
C28 C28
N29 N29
C30 C30
C31 C31
C32 C32
O33 O33
P34 P34
O35 O35
O36 O36
O37 O37
O38 O38
O39 O39
O40 O40
C41 C41
N42 N42
C43 C43
C44 C44
C45 C45
N46 N46
C47 C47
O48 O48
O49 O49
H011 H011
H021 H021
H031 H031
H041 H041
H051 H051
H061 H061
H062 H062
H1 H1
H141 H141
H151 H151
H161 H161
H182 H182
H181 H181
H191 H191
H201 H201
H211 H211
H2 H2
H231 H231
H4 H4
H261 H261
H282 H282
H281 H281
H283 H283
H301 H301
H322 H322
H321 H321
H5 H5
H6 H6
H7 H7
H411 H411
H431 H431
H441 H441
H461 H461