Atom Nomenclature for 2Q6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2Q6

Atom Name (V3) Atom Name (V2)
O1 O1
C7 C1
O2 O2
C6 C2
C1 C3
N1 N1
C5 C4
C4 C5
C3 C6
C2 C7
O3 O3
C30 C8
O4 O4
C31 C9
N3 N2
C29 C10
C28 C11
C32 C12
C33 C13
C37 C14
C36 C15
C38 C16
C39 C17
C40 C18
C41 C19
C35 C20
N4 N3
C34 C21
C27 C22
C26 C23
C25 C24
C42 C25
C43 C26
C24 C27
C23 C28
C C29
C9 C30
C8 C31
N N4
C10 C32
O O5
C11 C33
C12 C34
C17 C35
C16 C36
C15 C37
C14 C38
C13 C39
C22 C40
C21 C41
C20 C42
C19 C43
N2 N5
C18 C44
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55