PDB Chemical Component 2PR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2PR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.622 1.609
OP3 HOP3 0.950 0.967
P OP1 1.467 1.480
P OP2 1.470 1.610
P O5' 1.590 1.610
OP2 HOP2 0.950 0.967
O5' C5' 1.453 1.429
C5' C4' 1.529 1.529
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.091
C4' O4' 1.441 1.444
C4' C3' 1.535 1.550
C4' H4' 1.100 1.090
O4' C1' 1.432 1.438
C3' O3' 1.438 1.429
C3' C2' 1.539 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' C1' 1.522 1.541
C2' H2' 1.101 1.090
C2' H2'' 1.099 1.091
C1' N9 1.456 1.465
C1' H1' 1.100 1.091
N9 C8 1.376 1.364
N9 C4 1.382 1.372
C8 N7 1.331 1.301
C8 H8 1.080 1.080
N7 C5 1.392 1.357
C5 C6 1.418 1.395
C5 C4 1.382 1.409
C6 N1 1.356 1.321
C6 H6 1.080 1.081
N1 C2 1.341 1.328
C2 N2 1.336 1.386
C2 N3 1.339 1.323
N2 HN21 1.000 0.970
N2 HN22 1.000 0.970
N3 C4 1.352 1.326

Bond Angles for 2PR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.5 113.9
OP3 P OP1 103.8 109.5
OP3 P OP2 111.4 109.5
OP3 P O5' 101.0 109.5
OP1 P OP2 118.2 109.4
OP1 P O5' 111.7 109.5
OP2 P O5' 109.2 109.5
P OP2 HOP2 109.5 114.0
P O5' C5' 118.4 123.0
O5' C5' C4' 108.8 109.5
O5' C5' H5' 109.7 109.5
O5' C5' H5'' 109.8 109.4
C4' C5' H5' 109.7 109.5
C4' C5' H5'' 109.8 109.5
C5' C4' O4' 111.0 110.6
C5' C4' C3' 115.5 110.6
C5' C4' H4' 102.5 110.6
H5' C5' H5'' 109.0 109.4
O4' C4' C3' 103.7 103.5
O4' C4' H4' 114.6 110.6
C4' O4' C1' 113.0 107.0
C3' C4' H4' 109.9 110.7
C4' C3' O3' 108.7 110.9
C4' C3' C2' 102.4 102.1
C4' C3' H3' 116.3 110.9
O4' C1' C2' 104.1 107.3
O4' C1' N9 100.1 109.9
O4' C1' H1' 121.0 109.9
O3' C3' C2' 114.6 110.9
O3' C3' H3' 104.6 110.8
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 110.6 110.9
C3' C2' C1' 102.1 104.2
C3' C2' H2' 112.0 110.5
C3' C2' H2'' 113.5 110.5
C1' C2' H2' 112.0 110.5
C1' C2' H2'' 113.5 110.5
C2' C1' N9 116.4 109.9
C2' C1' H1' 106.1 109.9
H2' C2' H2'' 104.0 110.5
N9 C1' H1' 109.6 110.0
C1' N9 C8 128.7 126.2
C1' N9 C4 124.6 126.3
C8 N9 C4 106.4 107.5
N9 C8 N7 112.7 110.1
N9 C8 H8 123.7 125.0
N9 C4 C5 105.9 106.0
N9 C4 N3 127.2 134.9
N7 C8 H8 123.6 124.9
C8 N7 C5 104.2 109.5
N7 C5 C6 132.8 134.6
N7 C5 C4 110.8 107.0
C6 C5 C4 116.4 118.3
C5 C6 N1 118.1 118.7
C5 C6 H6 121.0 120.7
C5 C4 N3 126.9 119.1
N1 C6 H6 121.0 120.6
C6 N1 C2 118.8 121.3
N1 C2 N2 115.6 118.9
N1 C2 N3 128.5 122.1
N2 C2 N3 115.9 119.0
C2 N2 HN21 109.5 120.0
C2 N2 HN22 109.5 119.9
C2 N3 C4 111.2 120.4
HN21 N2 HN22 109.5 120.1

Torsion Angles for 2PR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 128.2 240.0
OP1 P OP3 O5' 244.1 120.0
OP2 P OP3 O5' 115.9 240.0
OP3 P OP2 HOP2 51.1 60.0
OP3 P O5' C5' 168.6 175.0
HOP3 OP3 P OP1 205.6 300.0
HOP3 OP3 P OP2 77.4 60.0
HOP3 OP3 P O5' 321.4 180.0
OP1 P OP3 HOP3 205.6 300.0
OP3 P OP1 OP2 236.1 120.0
OP3 P OP1 O5' 108.0 240.0
OP2 P OP1 O5' 232.0 120.0
OP1 P OP2 HOP2 291.1 180.0
OP1 P O5' C5' 278.4 54.9
OP2 P OP3 HOP3 77.4 60.0
OP3 P OP2 OP1 120.1 240.0
OP3 P OP2 O5' 249.3 120.0
OP1 P OP2 O5' 129.2 240.0
OP2 P O5' C5' 51.0 295.0
O5' P OP3 HOP3 321.4 180.0
OP3 P O5' OP1 250.2 120.1
OP3 P O5' OP2 117.5 240.0
OP1 P O5' OP2 227.4 120.0
O5' P OP2 HOP2 161.9 300.0
P O5' C5' C4' 129.9 180.0
P O5' C5' H5' 249.9 300.1
P O5' C5' H5'' 9.7 60.0
HOP2 OP2 P O5' 161.9 300.0
C4' C5' O5' H5' 240.0 239.9
C4' C5' O5' H5'' 120.2 120.0
O5' C5' C4' O4' 180.1 66.5
O5' C5' C4' C3' 297.8 180.6
O5' C5' C4' H4' 57.4 303.6
H5' C5' O5' H5'' 240.2 240.1
O5' C5' C4' H5' 120.0 120.1
O5' C5' C4' H5'' 239.8 240.0
H5' C5' C4' H5'' 119.7 120.0
O4' C4' C5' C3' 242.3 245.9
O4' C4' C5' H4' 122.8 122.9
C5' C4' O4' C1' 115.2 158.5
C3' C4' C5' H4' 240.4 237.0
C5' C4' C3' O3' 146.1 86.3
C5' C4' C3' C2' 267.7 204.5
C5' C4' C3' H3' 28.4 322.7
O5' C5' H5' C4' 240.5 239.9
O5' C5' H5' H5'' 120.3 119.9
C4' C5' H5' H5'' 239.8 240.0
H5' C5' C4' O4' 60.1 306.4
H5' C5' C4' C3' 177.8 60.5
H5' C5' C4' H4' 297.3 183.5
O5' C5' H5'' C4' 119.7 120.0
O5' C5' H5'' H5' 239.8 240.0
C4' C5' H5'' H5' 120.2 120.0
H5'' C5' C4' O4' 300.4 186.4
H5'' C5' C4' C3' 58.0 300.5
H5'' C5' C4' H4' 177.6 63.6
O4' C4' C5' H5' 60.1 306.4
O4' C4' C5' H5'' 300.4 186.4
C5' C4' O4' C3' 124.7 118.5
C5' C4' O4' H4' 244.5 237.1
C3' C4' O4' H4' 119.8 118.6
O4' C4' C3' O3' 267.7 204.8
O4' C4' C3' C2' 29.3 323.0
O4' C4' C3' H3' 150.1 81.2
C4' O4' C1' C2' 345.2 333.5
C4' O4' C1' N9 224.5 214.1
C4' O4' C1' H1' 104.2 92.9
C3' C4' C5' H5' 177.8 60.5
C3' C4' C5' H5'' 58.0 300.5
C5' C4' C3' O4' 238.4 241.5
C5' C4' C3' H4' 115.4 123.0
O4' C4' C3' H4' 237.1 241.5
C3' C4' O4' C1' 350.5 40.0
O3' C3' C4' C2' 238.4 241.8
O3' C3' C4' H3' 117.7 123.6
C4' C3' O3' HO3' 44.1 180.0
C2' C3' C4' H3' 239.3 241.8
C4' C3' C2' C1' 322.1 20.9
C4' C3' C2' H2' 82.1 139.6
C4' C3' C2' H2'' 199.5 262.2
H4' C4' C5' H5' 297.3 183.5
H4' C4' C5' H5'' 177.6 63.6
C5' C4' H4' O4' 120.3 122.9
C5' C4' H4' C3' 236.6 237.0
O4' C4' H4' C3' 116.3 114.1
H4' C4' O4' C1' 230.7 281.4
H4' C4' C3' O3' 30.7 323.3
H4' C4' C3' C2' 152.3 81.5
H4' C4' C3' H3' 273.0 199.7
C1' O4' C4' C3' 350.5 40.0
C1' O4' C4' H4' 230.7 281.4
C3' C2' C1' O4' 32.5 2.0
O4' C1' C2' H2' 272.5 243.3
O4' C1' C2' H2'' 155.1 120.7
C2' C1' O4' N9 120.7 119.5
C2' C1' O4' H1' 241.0 240.6
N9 C1' O4' H1' 120.4 121.1
O4' C1' N9 C8 91.3 23.6
O4' C1' N9 C4 278.9 203.3
O3' C3' C4' H4' 30.7 323.3
C4' C3' O3' C2' 113.9 112.7
C4' C3' O3' H3' 235.2 236.3
C2' C3' O3' H3' 121.3 123.6
O3' C3' C2' C1' 79.6 139.1
O3' C3' C2' H2' 199.6 257.8
O3' C3' C2' H2'' 316.9 20.4
C2' C3' C4' H4' 152.3 81.5
C4' C3' C2' O3' 242.5 241.8
C4' C3' C2' H3' 124.6 118.2
O4' C1' C2' C3' 32.5 2.0
O3' C3' C2' H3' 242.1 236.4
C2' C3' O3' HO3' 290.3 67.3
C1' C2' C3' H2' 240.0 241.3
C1' C2' C3' H2'' 122.6 118.7
C3' C2' C1' N9 141.6 121.5
C3' C2' C1' H1' 263.8 242.6
H2' C2' C3' H2'' 242.6 237.3
H3' C3' C4' H4' 273.0 199.7
C4' C3' H3' O3' 119.9 123.7
C4' C3' H3' C2' 243.7 247.3
O3' C3' H3' C2' 123.9 123.6
H3' C3' O3' HO3' 169.0 303.7
H3' C3' C2' C1' 197.5 262.6
H3' C3' C2' H2' 317.5 21.3
H3' C3' C2' H2'' 74.9 144.0
HO3' O3' C3' C2' 290.3 67.3
HO3' O3' C3' H3' 169.0 303.7
O4' C1' C2' N9 250.9 240.5
O4' C1' C2' H1' 128.7 119.4
C1' C2' C3' H3' 197.5 262.6
C3' C2' C1' H2' 120.0 118.7
C3' C2' C1' H2'' 237.4 241.3
H2' C2' C1' H2'' 117.4 122.6
N9 C1' C2' H1' 237.7 238.9
C2' C1' N9 C8 340.0 265.7
C2' C1' N9 C4 167.6 85.4
H2' C2' C3' H3' 317.5 21.3
C3' C2' H2' C1' 245.9 245.2
C3' C2' H2' H2'' 123.0 122.6
C1' C2' H2' H2'' 237.0 237.4
H2' C2' C1' N9 21.6 2.8
H2' C2' C1' H1' 143.8 123.9
H2'' C2' C3' H3' 74.9 144.0
C3' C2' H2'' C1' 116.1 114.8
C3' C2' H2'' H2' 238.1 237.3
C1' C2' H2'' H2' 122.0 122.6
H2'' C2' C1' N9 264.2 240.2
H2'' C2' C1' H1' 26.5 1.3
O4' C1' N9 C2' 111.4 117.9
O4' C1' N9 H1' 231.8 238.9
N9 C1' C2' H2' 21.6 2.8
N9 C1' C2' H2'' 264.2 240.2
C2' C1' N9 H1' 120.4 121.1
C8 N9 C1' C4 172.4 180.3
C1' N9 C8 N7 184.0 180.0
C1' N9 C8 H8 4.0 0.0
C1' N9 C4 C5 175.6 179.9
C1' N9 C4 N3 355.8 0.8
O4' C1' H1' C2' 242.0 242.2
O4' C1' H1' N9 115.6 121.1
H1' C1' C2' H2' 143.8 123.9
H1' C1' C2' H2'' 26.5 1.3
C2' C1' H1' N9 233.6 238.9
H1' C1' N9 C8 219.6 144.7
H1' C1' N9 C4 47.2 324.4
C8 N9 C1' H1' 219.6 144.7
C1' N9 C8 C4 186.5 179.7
C8 N9 C4 C5 1.7 359.6
C8 N9 C4 N3 182.0 180.5
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 2.1 0.0
C4 N9 C1' H1' 47.2 324.4
C1' N9 C4 C8 173.8 180.3
C4 N9 C8 N7 357.5 0.2
C4 N9 C8 H8 177.5 180.3
N7 C5 C4 N9 359.4 0.4
C6 C5 C4 N9 179.5 180.2
C5 C4 N9 N3 179.8 179.1
C2 N3 C4 N9 180.8 179.6
N7 C8 N9 C4 357.5 0.2
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 179.1 180.0
C8 N7 C5 C4 359.1 359.7
H8 C8 N9 C4 177.5 180.3
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 182.1 180.0
N9 C4 C5 N7 359.4 0.4
C5 N7 C8 H8 182.1 180.0
C6 C5 N7 C4 180.0 180.3
N7 C5 C6 N1 180.0 180.0
N7 C5 C6 H6 359.9 359.9
N7 C5 C4 N3 179.2 179.7
N9 C4 C5 C6 179.5 180.2
N7 C5 C6 C4 180.0 179.7
C6 C5 C4 N3 359.2 359.4
N1 C6 C5 H6 180.0 180.1
C5 C6 N1 C2 0.5 360.0
N9 C4 C5 N3 180.2 180.8
N7 C5 C4 C6 180.0 180.2
C4 C5 C6 N1 359.9 0.3
C4 C5 C6 H6 179.9 180.2
C2 N3 C4 C5 1.1 0.6
N1 C6 C5 C4 359.9 0.3
C5 C6 N1 H6 180.0 179.9
C6 N1 C2 N2 180.6 180.0
C6 N1 C2 N3 359.9 0.0
H6 C6 C5 C4 179.9 180.2
C5 C6 H6 N1 180.0 180.1
H6 C6 N1 C2 180.5 180.1
C2 N1 C6 H6 180.5 180.1
N2 C2 N1 N3 180.8 180.0
N1 C2 N2 HN21 323.9 0.0
N1 C2 N2 HN22 83.9 180.0
N1 C2 N3 C4 359.4 359.7
N1 C2 N2 N3 179.3 180.0
N2 C2 N3 C4 178.7 179.7
HN21 N2 C2 HN22 240.0 180.1
N9 C4 N3 C2 180.8 179.6
C5 C4 N3 C2 1.1 0.6
N1 C2 N3 N2 180.8 180.0
N3 C2 N2 HN21 144.6 180.0
N3 C2 N2 HN22 264.6 360.0
HN21 N2 C2 N3 144.6 180.0
C2 N2 HN21 HN22 120.0 179.9
HN22 N2 C2 N3 264.6 360.0
C2 N2 HN22 HN21 240.0 180.1
N9 C4 N3 C5 179.7 179.0