PDB Chemical Component 2PR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2PR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OP3 |
P |
1.622 |
1.609 |
OP3 |
HOP3 |
0.950 |
0.967 |
P |
OP1 |
1.467 |
1.480 |
P |
OP2 |
1.470 |
1.610 |
P |
O5' |
1.590 |
1.610 |
OP2 |
HOP2 |
0.950 |
0.967 |
O5' |
C5' |
1.453 |
1.429 |
C5' |
C4' |
1.529 |
1.529 |
C5' |
H5' |
1.100 |
1.090 |
C5' |
H5'' |
1.100 |
1.091 |
C4' |
O4' |
1.441 |
1.444 |
C4' |
C3' |
1.535 |
1.550 |
C4' |
H4' |
1.100 |
1.090 |
O4' |
C1' |
1.432 |
1.438 |
C3' |
O3' |
1.438 |
1.429 |
C3' |
C2' |
1.539 |
1.548 |
C3' |
H3' |
1.100 |
1.090 |
O3' |
HO3' |
0.950 |
0.967 |
C2' |
C1' |
1.522 |
1.541 |
C2' |
H2' |
1.101 |
1.090 |
C2' |
H2'' |
1.099 |
1.091 |
C1' |
N9 |
1.456 |
1.465 |
C1' |
H1' |
1.100 |
1.091 |
N9 |
C8 |
1.376 |
1.364 |
N9 |
C4 |
1.382 |
1.372 |
C8 |
N7 |
1.331 |
1.301 |
C8 |
H8 |
1.080 |
1.080 |
N7 |
C5 |
1.392 |
1.357 |
C5 |
C6 |
1.418 |
1.395 |
C5 |
C4 |
1.382 |
1.409 |
C6 |
N1 |
1.356 |
1.321 |
C6 |
H6 |
1.080 |
1.081 |
N1 |
C2 |
1.341 |
1.328 |
C2 |
N2 |
1.336 |
1.386 |
C2 |
N3 |
1.339 |
1.323 |
N2 |
HN21 |
1.000 |
0.970 |
N2 |
HN22 |
1.000 |
0.970 |
N3 |
C4 |
1.352 |
1.326 |
Bond Angles for 2PR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
P |
OP3 |
HOP3 |
109.5 |
113.9 |
OP3 |
P |
OP1 |
103.8 |
109.5 |
OP3 |
P |
OP2 |
111.4 |
109.5 |
OP3 |
P |
O5' |
101.0 |
109.5 |
OP1 |
P |
OP2 |
118.2 |
109.4 |
OP1 |
P |
O5' |
111.7 |
109.5 |
OP2 |
P |
O5' |
109.2 |
109.5 |
P |
OP2 |
HOP2 |
109.5 |
114.0 |
P |
O5' |
C5' |
118.4 |
123.0 |
O5' |
C5' |
C4' |
108.8 |
109.5 |
O5' |
C5' |
H5' |
109.7 |
109.5 |
O5' |
C5' |
H5'' |
109.8 |
109.4 |
C4' |
C5' |
H5' |
109.7 |
109.5 |
C4' |
C5' |
H5'' |
109.8 |
109.5 |
C5' |
C4' |
O4' |
111.0 |
110.6 |
C5' |
C4' |
C3' |
115.5 |
110.6 |
C5' |
C4' |
H4' |
102.5 |
110.6 |
H5' |
C5' |
H5'' |
109.0 |
109.4 |
O4' |
C4' |
C3' |
103.7 |
103.5 |
O4' |
C4' |
H4' |
114.6 |
110.6 |
C4' |
O4' |
C1' |
113.0 |
107.0 |
C3' |
C4' |
H4' |
109.9 |
110.7 |
C4' |
C3' |
O3' |
108.7 |
110.9 |
C4' |
C3' |
C2' |
102.4 |
102.1 |
C4' |
C3' |
H3' |
116.3 |
110.9 |
O4' |
C1' |
C2' |
104.1 |
107.3 |
O4' |
C1' |
N9 |
100.1 |
109.9 |
O4' |
C1' |
H1' |
121.0 |
109.9 |
O3' |
C3' |
C2' |
114.6 |
110.9 |
O3' |
C3' |
H3' |
104.6 |
110.8 |
C3' |
O3' |
HO3' |
109.5 |
114.0 |
C2' |
C3' |
H3' |
110.6 |
110.9 |
C3' |
C2' |
C1' |
102.1 |
104.2 |
C3' |
C2' |
H2' |
112.0 |
110.5 |
C3' |
C2' |
H2'' |
113.5 |
110.5 |
C1' |
C2' |
H2' |
112.0 |
110.5 |
C1' |
C2' |
H2'' |
113.5 |
110.5 |
C2' |
C1' |
N9 |
116.4 |
109.9 |
C2' |
C1' |
H1' |
106.1 |
109.9 |
H2' |
C2' |
H2'' |
104.0 |
110.5 |
N9 |
C1' |
H1' |
109.6 |
110.0 |
C1' |
N9 |
C8 |
128.7 |
126.2 |
C1' |
N9 |
C4 |
124.6 |
126.3 |
C8 |
N9 |
C4 |
106.4 |
107.5 |
N9 |
C8 |
N7 |
112.7 |
110.1 |
N9 |
C8 |
H8 |
123.7 |
125.0 |
N9 |
C4 |
C5 |
105.9 |
106.0 |
N9 |
C4 |
N3 |
127.2 |
134.9 |
N7 |
C8 |
H8 |
123.6 |
124.9 |
C8 |
N7 |
C5 |
104.2 |
109.5 |
N7 |
C5 |
C6 |
132.8 |
134.6 |
N7 |
C5 |
C4 |
110.8 |
107.0 |
C6 |
C5 |
C4 |
116.4 |
118.3 |
C5 |
C6 |
N1 |
118.1 |
118.7 |
C5 |
C6 |
H6 |
121.0 |
120.7 |
C5 |
C4 |
N3 |
126.9 |
119.1 |
N1 |
C6 |
H6 |
121.0 |
120.6 |
C6 |
N1 |
C2 |
118.8 |
121.3 |
N1 |
C2 |
N2 |
115.6 |
118.9 |
N1 |
C2 |
N3 |
128.5 |
122.1 |
N2 |
C2 |
N3 |
115.9 |
119.0 |
C2 |
N2 |
HN21 |
109.5 |
120.0 |
C2 |
N2 |
HN22 |
109.5 |
119.9 |
C2 |
N3 |
C4 |
111.2 |
120.4 |
HN21 |
N2 |
HN22 |
109.5 |
120.1 |
Torsion Angles for 2PR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP3 |
OP2 |
128.2 |
240.0 |
OP1 |
P |
OP3 |
O5' |
244.1 |
120.0 |
OP2 |
P |
OP3 |
O5' |
115.9 |
240.0 |
OP3 |
P |
OP2 |
HOP2 |
51.1 |
60.0 |
OP3 |
P |
O5' |
C5' |
168.6 |
175.0 |
HOP3 |
OP3 |
P |
OP1 |
205.6 |
300.0 |
HOP3 |
OP3 |
P |
OP2 |
77.4 |
60.0 |
HOP3 |
OP3 |
P |
O5' |
321.4 |
180.0 |
OP1 |
P |
OP3 |
HOP3 |
205.6 |
300.0 |
OP3 |
P |
OP1 |
OP2 |
236.1 |
120.0 |
OP3 |
P |
OP1 |
O5' |
108.0 |
240.0 |
OP2 |
P |
OP1 |
O5' |
232.0 |
120.0 |
OP1 |
P |
OP2 |
HOP2 |
291.1 |
180.0 |
OP1 |
P |
O5' |
C5' |
278.4 |
54.9 |
OP2 |
P |
OP3 |
HOP3 |
77.4 |
60.0 |
OP3 |
P |
OP2 |
OP1 |
120.1 |
240.0 |
OP3 |
P |
OP2 |
O5' |
249.3 |
120.0 |
OP1 |
P |
OP2 |
O5' |
129.2 |
240.0 |
OP2 |
P |
O5' |
C5' |
51.0 |
295.0 |
O5' |
P |
OP3 |
HOP3 |
321.4 |
180.0 |
OP3 |
P |
O5' |
OP1 |
250.2 |
120.1 |
OP3 |
P |
O5' |
OP2 |
117.5 |
240.0 |
OP1 |
P |
O5' |
OP2 |
227.4 |
120.0 |
O5' |
P |
OP2 |
HOP2 |
161.9 |
300.0 |
P |
O5' |
C5' |
C4' |
129.9 |
180.0 |
P |
O5' |
C5' |
H5' |
249.9 |
300.1 |
P |
O5' |
C5' |
H5'' |
9.7 |
60.0 |
HOP2 |
OP2 |
P |
O5' |
161.9 |
300.0 |
C4' |
C5' |
O5' |
H5' |
240.0 |
239.9 |
C4' |
C5' |
O5' |
H5'' |
120.2 |
120.0 |
O5' |
C5' |
C4' |
O4' |
180.1 |
66.5 |
O5' |
C5' |
C4' |
C3' |
297.8 |
180.6 |
O5' |
C5' |
C4' |
H4' |
57.4 |
303.6 |
H5' |
C5' |
O5' |
H5'' |
240.2 |
240.1 |
O5' |
C5' |
C4' |
H5' |
120.0 |
120.1 |
O5' |
C5' |
C4' |
H5'' |
239.8 |
240.0 |
H5' |
C5' |
C4' |
H5'' |
119.7 |
120.0 |
O4' |
C4' |
C5' |
C3' |
242.3 |
245.9 |
O4' |
C4' |
C5' |
H4' |
122.8 |
122.9 |
C5' |
C4' |
O4' |
C1' |
115.2 |
158.5 |
C3' |
C4' |
C5' |
H4' |
240.4 |
237.0 |
C5' |
C4' |
C3' |
O3' |
146.1 |
86.3 |
C5' |
C4' |
C3' |
C2' |
267.7 |
204.5 |
C5' |
C4' |
C3' |
H3' |
28.4 |
322.7 |
O5' |
C5' |
H5' |
C4' |
240.5 |
239.9 |
O5' |
C5' |
H5' |
H5'' |
120.3 |
119.9 |
C4' |
C5' |
H5' |
H5'' |
239.8 |
240.0 |
H5' |
C5' |
C4' |
O4' |
60.1 |
306.4 |
H5' |
C5' |
C4' |
C3' |
177.8 |
60.5 |
H5' |
C5' |
C4' |
H4' |
297.3 |
183.5 |
O5' |
C5' |
H5'' |
C4' |
119.7 |
120.0 |
O5' |
C5' |
H5'' |
H5' |
239.8 |
240.0 |
C4' |
C5' |
H5'' |
H5' |
120.2 |
120.0 |
H5'' |
C5' |
C4' |
O4' |
300.4 |
186.4 |
H5'' |
C5' |
C4' |
C3' |
58.0 |
300.5 |
H5'' |
C5' |
C4' |
H4' |
177.6 |
63.6 |
O4' |
C4' |
C5' |
H5' |
60.1 |
306.4 |
O4' |
C4' |
C5' |
H5'' |
300.4 |
186.4 |
C5' |
C4' |
O4' |
C3' |
124.7 |
118.5 |
C5' |
C4' |
O4' |
H4' |
244.5 |
237.1 |
C3' |
C4' |
O4' |
H4' |
119.8 |
118.6 |
O4' |
C4' |
C3' |
O3' |
267.7 |
204.8 |
O4' |
C4' |
C3' |
C2' |
29.3 |
323.0 |
O4' |
C4' |
C3' |
H3' |
150.1 |
81.2 |
C4' |
O4' |
C1' |
C2' |
345.2 |
333.5 |
C4' |
O4' |
C1' |
N9 |
224.5 |
214.1 |
C4' |
O4' |
C1' |
H1' |
104.2 |
92.9 |
C3' |
C4' |
C5' |
H5' |
177.8 |
60.5 |
C3' |
C4' |
C5' |
H5'' |
58.0 |
300.5 |
C5' |
C4' |
C3' |
O4' |
238.4 |
241.5 |
C5' |
C4' |
C3' |
H4' |
115.4 |
123.0 |
O4' |
C4' |
C3' |
H4' |
237.1 |
241.5 |
C3' |
C4' |
O4' |
C1' |
350.5 |
40.0 |
O3' |
C3' |
C4' |
C2' |
238.4 |
241.8 |
O3' |
C3' |
C4' |
H3' |
117.7 |
123.6 |
C4' |
C3' |
O3' |
HO3' |
44.1 |
180.0 |
C2' |
C3' |
C4' |
H3' |
239.3 |
241.8 |
C4' |
C3' |
C2' |
C1' |
322.1 |
20.9 |
C4' |
C3' |
C2' |
H2' |
82.1 |
139.6 |
C4' |
C3' |
C2' |
H2'' |
199.5 |
262.2 |
H4' |
C4' |
C5' |
H5' |
297.3 |
183.5 |
H4' |
C4' |
C5' |
H5'' |
177.6 |
63.6 |
C5' |
C4' |
H4' |
O4' |
120.3 |
122.9 |
C5' |
C4' |
H4' |
C3' |
236.6 |
237.0 |
O4' |
C4' |
H4' |
C3' |
116.3 |
114.1 |
H4' |
C4' |
O4' |
C1' |
230.7 |
281.4 |
H4' |
C4' |
C3' |
O3' |
30.7 |
323.3 |
H4' |
C4' |
C3' |
C2' |
152.3 |
81.5 |
H4' |
C4' |
C3' |
H3' |
273.0 |
199.7 |
C1' |
O4' |
C4' |
C3' |
350.5 |
40.0 |
C1' |
O4' |
C4' |
H4' |
230.7 |
281.4 |
C3' |
C2' |
C1' |
O4' |
32.5 |
2.0 |
O4' |
C1' |
C2' |
H2' |
272.5 |
243.3 |
O4' |
C1' |
C2' |
H2'' |
155.1 |
120.7 |
C2' |
C1' |
O4' |
N9 |
120.7 |
119.5 |
C2' |
C1' |
O4' |
H1' |
241.0 |
240.6 |
N9 |
C1' |
O4' |
H1' |
120.4 |
121.1 |
O4' |
C1' |
N9 |
C8 |
91.3 |
23.6 |
O4' |
C1' |
N9 |
C4 |
278.9 |
203.3 |
O3' |
C3' |
C4' |
H4' |
30.7 |
323.3 |
C4' |
C3' |
O3' |
C2' |
113.9 |
112.7 |
C4' |
C3' |
O3' |
H3' |
235.2 |
236.3 |
C2' |
C3' |
O3' |
H3' |
121.3 |
123.6 |
O3' |
C3' |
C2' |
C1' |
79.6 |
139.1 |
O3' |
C3' |
C2' |
H2' |
199.6 |
257.8 |
O3' |
C3' |
C2' |
H2'' |
316.9 |
20.4 |
C2' |
C3' |
C4' |
H4' |
152.3 |
81.5 |
C4' |
C3' |
C2' |
O3' |
242.5 |
241.8 |
C4' |
C3' |
C2' |
H3' |
124.6 |
118.2 |
O4' |
C1' |
C2' |
C3' |
32.5 |
2.0 |
O3' |
C3' |
C2' |
H3' |
242.1 |
236.4 |
C2' |
C3' |
O3' |
HO3' |
290.3 |
67.3 |
C1' |
C2' |
C3' |
H2' |
240.0 |
241.3 |
C1' |
C2' |
C3' |
H2'' |
122.6 |
118.7 |
C3' |
C2' |
C1' |
N9 |
141.6 |
121.5 |
C3' |
C2' |
C1' |
H1' |
263.8 |
242.6 |
H2' |
C2' |
C3' |
H2'' |
242.6 |
237.3 |
H3' |
C3' |
C4' |
H4' |
273.0 |
199.7 |
C4' |
C3' |
H3' |
O3' |
119.9 |
123.7 |
C4' |
C3' |
H3' |
C2' |
243.7 |
247.3 |
O3' |
C3' |
H3' |
C2' |
123.9 |
123.6 |
H3' |
C3' |
O3' |
HO3' |
169.0 |
303.7 |
H3' |
C3' |
C2' |
C1' |
197.5 |
262.6 |
H3' |
C3' |
C2' |
H2' |
317.5 |
21.3 |
H3' |
C3' |
C2' |
H2'' |
74.9 |
144.0 |
HO3' |
O3' |
C3' |
C2' |
290.3 |
67.3 |
HO3' |
O3' |
C3' |
H3' |
169.0 |
303.7 |
O4' |
C1' |
C2' |
N9 |
250.9 |
240.5 |
O4' |
C1' |
C2' |
H1' |
128.7 |
119.4 |
C1' |
C2' |
C3' |
H3' |
197.5 |
262.6 |
C3' |
C2' |
C1' |
H2' |
120.0 |
118.7 |
C3' |
C2' |
C1' |
H2'' |
237.4 |
241.3 |
H2' |
C2' |
C1' |
H2'' |
117.4 |
122.6 |
N9 |
C1' |
C2' |
H1' |
237.7 |
238.9 |
C2' |
C1' |
N9 |
C8 |
340.0 |
265.7 |
C2' |
C1' |
N9 |
C4 |
167.6 |
85.4 |
H2' |
C2' |
C3' |
H3' |
317.5 |
21.3 |
C3' |
C2' |
H2' |
C1' |
245.9 |
245.2 |
C3' |
C2' |
H2' |
H2'' |
123.0 |
122.6 |
C1' |
C2' |
H2' |
H2'' |
237.0 |
237.4 |
H2' |
C2' |
C1' |
N9 |
21.6 |
2.8 |
H2' |
C2' |
C1' |
H1' |
143.8 |
123.9 |
H2'' |
C2' |
C3' |
H3' |
74.9 |
144.0 |
C3' |
C2' |
H2'' |
C1' |
116.1 |
114.8 |
C3' |
C2' |
H2'' |
H2' |
238.1 |
237.3 |
C1' |
C2' |
H2'' |
H2' |
122.0 |
122.6 |
H2'' |
C2' |
C1' |
N9 |
264.2 |
240.2 |
H2'' |
C2' |
C1' |
H1' |
26.5 |
1.3 |
O4' |
C1' |
N9 |
C2' |
111.4 |
117.9 |
O4' |
C1' |
N9 |
H1' |
231.8 |
238.9 |
N9 |
C1' |
C2' |
H2' |
21.6 |
2.8 |
N9 |
C1' |
C2' |
H2'' |
264.2 |
240.2 |
C2' |
C1' |
N9 |
H1' |
120.4 |
121.1 |
C8 |
N9 |
C1' |
C4 |
172.4 |
180.3 |
C1' |
N9 |
C8 |
N7 |
184.0 |
180.0 |
C1' |
N9 |
C8 |
H8 |
4.0 |
0.0 |
C1' |
N9 |
C4 |
C5 |
175.6 |
179.9 |
C1' |
N9 |
C4 |
N3 |
355.8 |
0.8 |
O4' |
C1' |
H1' |
C2' |
242.0 |
242.2 |
O4' |
C1' |
H1' |
N9 |
115.6 |
121.1 |
H1' |
C1' |
C2' |
H2' |
143.8 |
123.9 |
H1' |
C1' |
C2' |
H2'' |
26.5 |
1.3 |
C2' |
C1' |
H1' |
N9 |
233.6 |
238.9 |
H1' |
C1' |
N9 |
C8 |
219.6 |
144.7 |
H1' |
C1' |
N9 |
C4 |
47.2 |
324.4 |
C8 |
N9 |
C1' |
H1' |
219.6 |
144.7 |
C1' |
N9 |
C8 |
C4 |
186.5 |
179.7 |
C8 |
N9 |
C4 |
C5 |
1.7 |
359.6 |
C8 |
N9 |
C4 |
N3 |
182.0 |
180.5 |
N7 |
C8 |
N9 |
H8 |
180.0 |
179.9 |
N9 |
C8 |
N7 |
C5 |
2.1 |
0.0 |
C4 |
N9 |
C1' |
H1' |
47.2 |
324.4 |
C1' |
N9 |
C4 |
C8 |
173.8 |
180.3 |
C4 |
N9 |
C8 |
N7 |
357.5 |
0.2 |
C4 |
N9 |
C8 |
H8 |
177.5 |
180.3 |
N7 |
C5 |
C4 |
N9 |
359.4 |
0.4 |
C6 |
C5 |
C4 |
N9 |
179.5 |
180.2 |
C5 |
C4 |
N9 |
N3 |
179.8 |
179.1 |
C2 |
N3 |
C4 |
N9 |
180.8 |
179.6 |
N7 |
C8 |
N9 |
C4 |
357.5 |
0.2 |
N9 |
C8 |
N7 |
H8 |
180.0 |
180.1 |
C8 |
N7 |
C5 |
C6 |
179.1 |
180.0 |
C8 |
N7 |
C5 |
C4 |
359.1 |
359.7 |
H8 |
C8 |
N9 |
C4 |
177.5 |
180.3 |
N9 |
C8 |
H8 |
N7 |
180.0 |
179.9 |
H8 |
C8 |
N7 |
C5 |
182.1 |
180.0 |
N9 |
C4 |
C5 |
N7 |
359.4 |
0.4 |
C5 |
N7 |
C8 |
H8 |
182.1 |
180.0 |
C6 |
C5 |
N7 |
C4 |
180.0 |
180.3 |
N7 |
C5 |
C6 |
N1 |
180.0 |
180.0 |
N7 |
C5 |
C6 |
H6 |
359.9 |
359.9 |
N7 |
C5 |
C4 |
N3 |
179.2 |
179.7 |
N9 |
C4 |
C5 |
C6 |
179.5 |
180.2 |
N7 |
C5 |
C6 |
C4 |
180.0 |
179.7 |
C6 |
C5 |
C4 |
N3 |
359.2 |
359.4 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
C5 |
C6 |
N1 |
C2 |
0.5 |
360.0 |
N9 |
C4 |
C5 |
N3 |
180.2 |
180.8 |
N7 |
C5 |
C4 |
C6 |
180.0 |
180.2 |
C4 |
C5 |
C6 |
N1 |
359.9 |
0.3 |
C4 |
C5 |
C6 |
H6 |
179.9 |
180.2 |
C2 |
N3 |
C4 |
C5 |
1.1 |
0.6 |
N1 |
C6 |
C5 |
C4 |
359.9 |
0.3 |
C5 |
C6 |
N1 |
H6 |
180.0 |
179.9 |
C6 |
N1 |
C2 |
N2 |
180.6 |
180.0 |
C6 |
N1 |
C2 |
N3 |
359.9 |
0.0 |
H6 |
C6 |
C5 |
C4 |
179.9 |
180.2 |
C5 |
C6 |
H6 |
N1 |
180.0 |
180.1 |
H6 |
C6 |
N1 |
C2 |
180.5 |
180.1 |
C2 |
N1 |
C6 |
H6 |
180.5 |
180.1 |
N2 |
C2 |
N1 |
N3 |
180.8 |
180.0 |
N1 |
C2 |
N2 |
HN21 |
323.9 |
0.0 |
N1 |
C2 |
N2 |
HN22 |
83.9 |
180.0 |
N1 |
C2 |
N3 |
C4 |
359.4 |
359.7 |
N1 |
C2 |
N2 |
N3 |
179.3 |
180.0 |
N2 |
C2 |
N3 |
C4 |
178.7 |
179.7 |
HN21 |
N2 |
C2 |
HN22 |
240.0 |
180.1 |
N9 |
C4 |
N3 |
C2 |
180.8 |
179.6 |
C5 |
C4 |
N3 |
C2 |
1.1 |
0.6 |
N1 |
C2 |
N3 |
N2 |
180.8 |
180.0 |
N3 |
C2 |
N2 |
HN21 |
144.6 |
180.0 |
N3 |
C2 |
N2 |
HN22 |
264.6 |
360.0 |
HN21 |
N2 |
C2 |
N3 |
144.6 |
180.0 |
C2 |
N2 |
HN21 |
HN22 |
120.0 |
179.9 |
HN22 |
N2 |
C2 |
N3 |
264.6 |
360.0 |
C2 |
N2 |
HN22 |
HN21 |
240.0 |
180.1 |
N9 |
C4 |
N3 |
C5 |
179.7 |
179.0 |