PDB Chemical Component 2PP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2PP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.557 |
1.505 |
| C1 |
O1 |
1.305 |
1.208 |
| C1 |
O2 |
1.332 |
1.342 |
| C2 |
C3 |
1.489 |
1.530 |
| C2 |
C1' |
1.531 |
1.530 |
| C2 |
H2 |
1.115 |
1.090 |
| C3 |
C4 |
1.531 |
1.529 |
| C3 |
H31 |
1.115 |
1.090 |
| C3 |
H32 |
1.114 |
1.090 |
| C4 |
C5 |
1.504 |
1.530 |
| C4 |
H41 |
1.115 |
1.089 |
| C4 |
H42 |
1.116 |
1.090 |
| C5 |
H51 |
1.115 |
1.089 |
| C5 |
H52 |
1.115 |
1.090 |
| C5 |
H53 |
1.115 |
1.090 |
| C1' |
C2' |
1.537 |
1.529 |
| C1' |
H1'1 |
1.114 |
1.089 |
| C1' |
H1'2 |
1.115 |
1.090 |
| C2' |
C3' |
1.498 |
1.530 |
| C2' |
H2'1 |
1.116 |
1.089 |
| C2' |
H2'2 |
1.116 |
1.089 |
| C3' |
H3'1 |
1.115 |
1.090 |
| C3' |
H3'2 |
1.115 |
1.090 |
| C3' |
H3'3 |
1.115 |
1.090 |
| O2 |
HO2 |
0.950 |
0.968 |
Bond Angles for 2PP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
O1 |
112.1 |
120.0 |
| C2 |
C1 |
O2 |
134.8 |
120.0 |
| C1 |
C2 |
C3 |
116.1 |
109.5 |
| C1 |
C2 |
C1' |
109.8 |
109.5 |
| C1 |
C2 |
H2 |
104.5 |
109.5 |
| O1 |
C1 |
O2 |
113.0 |
119.9 |
| C1 |
O2 |
HO2 |
134.8 |
120.1 |
| C3 |
C2 |
C1' |
109.3 |
109.5 |
| C3 |
C2 |
H2 |
105.0 |
109.4 |
| C2 |
C3 |
C4 |
120.6 |
109.5 |
| C2 |
C3 |
H31 |
108.2 |
109.5 |
| C2 |
C3 |
H32 |
108.2 |
109.4 |
| C1' |
C2 |
H2 |
112.0 |
109.4 |
| C2 |
C1' |
C2' |
106.8 |
109.5 |
| C2 |
C1' |
H1'1 |
113.2 |
109.5 |
| C2 |
C1' |
H1'2 |
113.2 |
109.4 |
| C4 |
C3 |
H31 |
108.2 |
109.5 |
| C4 |
C3 |
H32 |
108.2 |
109.5 |
| C3 |
C4 |
C5 |
110.7 |
109.5 |
| C3 |
C4 |
H41 |
111.8 |
109.5 |
| C3 |
C4 |
H42 |
111.8 |
109.4 |
| H31 |
C3 |
H32 |
101.8 |
109.4 |
| C5 |
C4 |
H41 |
111.8 |
109.5 |
| C5 |
C4 |
H42 |
111.8 |
109.4 |
| C4 |
C5 |
H51 |
110.6 |
109.5 |
| C4 |
C5 |
H52 |
111.7 |
109.4 |
| C4 |
C5 |
H53 |
111.8 |
109.5 |
| H41 |
C4 |
H42 |
98.6 |
109.5 |
| H51 |
C5 |
H52 |
111.8 |
109.5 |
| H51 |
C5 |
H53 |
111.8 |
109.5 |
| H52 |
C5 |
H53 |
98.7 |
109.4 |
| C2' |
C1' |
H1'1 |
113.3 |
109.6 |
| C2' |
C1' |
H1'2 |
113.2 |
109.5 |
| C1' |
C2' |
C3' |
114.0 |
109.5 |
| C1' |
C2' |
H2'1 |
110.5 |
109.5 |
| C1' |
C2' |
H2'2 |
110.6 |
109.5 |
| H1'1 |
C1' |
H1'2 |
97.3 |
109.5 |
| C3' |
C2' |
H2'1 |
110.6 |
109.5 |
| C3' |
C2' |
H2'2 |
110.6 |
109.4 |
| C2' |
C3' |
H3'1 |
113.9 |
109.5 |
| C2' |
C3' |
H3'2 |
110.5 |
109.5 |
| C2' |
C3' |
H3'3 |
110.5 |
109.4 |
| H2'1 |
C2' |
H2'2 |
99.6 |
109.5 |
| H3'1 |
C3' |
H3'2 |
110.6 |
109.5 |
| H3'1 |
C3' |
H3'3 |
110.6 |
109.5 |
| H3'2 |
C3' |
H3'3 |
99.8 |
109.5 |
Torsion Angles for 2PP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
C2 |
O2 |
175.3 |
180.0 |
| C2 |
C1 |
O2 |
HO2 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C1' |
235.5 |
239.9 |
| C3 |
C2 |
C1 |
H2 |
115.2 |
119.9 |
| C1 |
C2 |
C3 |
C4 |
332.0 |
300.1 |
| C1 |
C2 |
C3 |
H31 |
97.2 |
180.0 |
| C1 |
C2 |
C3 |
H32 |
206.7 |
60.1 |
| C1' |
C2 |
C1 |
H2 |
239.7 |
240.0 |
| C1 |
C2 |
C1' |
C2' |
40.7 |
60.0 |
| C1 |
C2 |
C1' |
H1'1 |
166.0 |
180.1 |
| C1 |
C2 |
C1' |
H1'2 |
275.5 |
300.0 |
| C2 |
C1 |
O1 |
O2 |
183.6 |
180.0 |
| O1 |
C1 |
C2 |
C3 |
99.8 |
360.0 |
| O1 |
C1 |
C2 |
C1' |
224.4 |
120.0 |
| O1 |
C1 |
C2 |
H2 |
344.7 |
240.0 |
| O1 |
C1 |
O2 |
HO2 |
4.7 |
0.0 |
| C2 |
C1 |
O2 |
O1 |
175.3 |
180.0 |
| O2 |
C1 |
C2 |
C3 |
284.5 |
180.0 |
| O2 |
C1 |
C2 |
C1' |
49.0 |
300.0 |
| O2 |
C1 |
C2 |
H2 |
169.3 |
60.1 |
| C3 |
C2 |
C1 |
O1 |
99.8 |
360.0 |
| C3 |
C2 |
C1 |
O2 |
284.5 |
180.0 |
| C1 |
C2 |
C3 |
C1' |
124.8 |
120.1 |
| C1 |
C2 |
C3 |
H2 |
245.2 |
240.0 |
| C1' |
C2 |
C3 |
H2 |
120.4 |
119.9 |
| C3 |
C2 |
C1' |
C2' |
169.1 |
180.0 |
| C3 |
C2 |
C1' |
H1'1 |
294.4 |
300.1 |
| C3 |
C2 |
C1' |
H1'2 |
43.9 |
60.1 |
| C4 |
C3 |
C2 |
H31 |
234.8 |
120.1 |
| C4 |
C3 |
C2 |
H32 |
125.2 |
240.0 |
| C2 |
C3 |
C4 |
C5 |
206.6 |
180.0 |
| C2 |
C3 |
C4 |
H41 |
331.9 |
60.0 |
| C2 |
C3 |
C4 |
H42 |
81.3 |
299.9 |
| H31 |
C3 |
C2 |
H32 |
250.5 |
119.9 |
| C1' |
C2 |
C1 |
O1 |
224.4 |
120.0 |
| C1' |
C2 |
C1 |
O2 |
49.0 |
300.0 |
| C1 |
C2 |
C1' |
C3 |
231.6 |
240.0 |
| C1 |
C2 |
C1' |
H2 |
115.6 |
120.1 |
| C3 |
C2 |
C1' |
H2 |
244.0 |
240.1 |
| C1' |
C2 |
C3 |
C4 |
207.2 |
180.0 |
| C1' |
C2 |
C3 |
H31 |
332.4 |
59.9 |
| C1' |
C2 |
C3 |
H32 |
81.9 |
300.0 |
| C2' |
C1' |
C2 |
H1'1 |
234.7 |
239.9 |
| C2' |
C1' |
C2 |
H1'2 |
125.2 |
119.9 |
| C2 |
C1' |
C2' |
C3' |
102.3 |
180.1 |
| C2 |
C1' |
C2' |
H2'1 |
227.6 |
300.1 |
| C2 |
C1' |
C2' |
H2'2 |
337.0 |
60.1 |
| H1'1 |
C1' |
C2 |
H1'2 |
250.5 |
240.0 |
| H2 |
C2 |
C1 |
O1 |
344.7 |
240.0 |
| H2 |
C2 |
C1 |
O2 |
169.3 |
60.1 |
| C1 |
C2 |
H2 |
C3 |
122.7 |
120.0 |
| C1 |
C2 |
H2 |
C1' |
241.2 |
239.9 |
| C3 |
C2 |
H2 |
C1' |
118.6 |
119.9 |
| H2 |
C2 |
C3 |
C4 |
86.8 |
60.1 |
| H2 |
C2 |
C3 |
H31 |
212.0 |
300.0 |
| H2 |
C2 |
C3 |
H32 |
321.6 |
180.0 |
| H2 |
C2 |
C1' |
C2' |
285.1 |
299.9 |
| H2 |
C2 |
C1' |
H1'1 |
50.4 |
60.0 |
| H2 |
C2 |
C1' |
H1'2 |
159.9 |
180.0 |
| C4 |
C3 |
C2 |
C1' |
207.2 |
180.0 |
| C4 |
C3 |
C2 |
H2 |
86.8 |
60.1 |
| C2 |
C3 |
C4 |
H31 |
125.3 |
239.9 |
| C2 |
C3 |
C4 |
H32 |
234.7 |
120.0 |
| H31 |
C3 |
C4 |
H32 |
109.5 |
240.1 |
| C5 |
C4 |
C3 |
H41 |
234.7 |
120.0 |
| C5 |
C4 |
C3 |
H42 |
125.3 |
240.1 |
| C3 |
C4 |
C5 |
H51 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
H52 |
305.2 |
300.0 |
| C3 |
C4 |
C5 |
H53 |
54.7 |
59.9 |
| H41 |
C4 |
C3 |
H42 |
250.6 |
120.0 |
| H31 |
C3 |
C2 |
C1' |
332.4 |
59.9 |
| H31 |
C3 |
C2 |
H2 |
212.0 |
300.0 |
| C2 |
C3 |
H31 |
C4 |
227.7 |
120.1 |
| C2 |
C3 |
H31 |
H32 |
113.9 |
240.1 |
| C4 |
C3 |
H31 |
H32 |
246.2 |
120.0 |
| H31 |
C3 |
C4 |
C5 |
81.3 |
300.1 |
| H31 |
C3 |
C4 |
H41 |
206.6 |
180.1 |
| H31 |
C3 |
C4 |
H42 |
316.1 |
60.0 |
| H32 |
C3 |
C2 |
C1' |
81.9 |
300.0 |
| H32 |
C3 |
C2 |
H2 |
321.6 |
180.0 |
| C2 |
C3 |
H32 |
C4 |
132.3 |
240.0 |
| C2 |
C3 |
H32 |
H31 |
246.1 |
120.0 |
| C4 |
C3 |
H32 |
H31 |
113.8 |
240.0 |
| H32 |
C3 |
C4 |
C5 |
331.9 |
60.0 |
| H32 |
C3 |
C4 |
H41 |
97.1 |
300.0 |
| H32 |
C3 |
C4 |
H42 |
206.6 |
180.0 |
| C5 |
C4 |
C3 |
H31 |
81.3 |
300.1 |
| C5 |
C4 |
C3 |
H32 |
331.9 |
60.0 |
| C3 |
C4 |
C5 |
H41 |
125.3 |
240.0 |
| C3 |
C4 |
C5 |
H42 |
234.7 |
119.9 |
| H41 |
C4 |
C5 |
H42 |
109.4 |
240.0 |
| H51 |
C5 |
C4 |
H52 |
234.8 |
240.0 |
| H51 |
C5 |
C4 |
H53 |
125.3 |
120.1 |
| H52 |
C5 |
C4 |
H53 |
250.5 |
240.1 |
| H41 |
C4 |
C3 |
H31 |
206.6 |
180.1 |
| H41 |
C4 |
C3 |
H32 |
97.1 |
300.0 |
| C3 |
C4 |
H41 |
C5 |
235.3 |
120.1 |
| C3 |
C4 |
H41 |
H42 |
117.7 |
240.0 |
| C5 |
C4 |
H41 |
H42 |
242.4 |
119.9 |
| H41 |
C4 |
C5 |
H51 |
54.7 |
300.0 |
| H41 |
C4 |
C5 |
H52 |
179.9 |
60.0 |
| H41 |
C4 |
C5 |
H53 |
289.4 |
179.9 |
| H42 |
C4 |
C3 |
H31 |
316.1 |
60.0 |
| H42 |
C4 |
C3 |
H32 |
206.6 |
180.0 |
| C3 |
C4 |
H42 |
C5 |
124.7 |
240.0 |
| C3 |
C4 |
H42 |
H41 |
242.3 |
120.0 |
| C5 |
C4 |
H42 |
H41 |
117.6 |
240.0 |
| H42 |
C4 |
C5 |
H51 |
305.3 |
60.0 |
| H42 |
C4 |
C5 |
H52 |
70.5 |
180.0 |
| H42 |
C4 |
C5 |
H53 |
180.0 |
300.0 |
| H51 |
C5 |
C4 |
H41 |
54.7 |
300.0 |
| H51 |
C5 |
C4 |
H42 |
305.3 |
60.0 |
| C4 |
C5 |
H51 |
H52 |
125.2 |
120.0 |
| C4 |
C5 |
H51 |
H53 |
234.8 |
239.9 |
| H52 |
C5 |
H51 |
H53 |
109.6 |
119.9 |
| H52 |
C5 |
C4 |
H41 |
179.9 |
60.0 |
| H52 |
C5 |
C4 |
H42 |
70.5 |
180.0 |
| C4 |
C5 |
H52 |
H51 |
235.4 |
240.0 |
| C4 |
C5 |
H52 |
H53 |
117.7 |
120.0 |
| H51 |
C5 |
H52 |
H53 |
242.3 |
240.0 |
| H53 |
C5 |
C4 |
H41 |
289.4 |
179.9 |
| H53 |
C5 |
C4 |
H42 |
180.0 |
300.0 |
| C4 |
C5 |
H53 |
H51 |
124.6 |
120.1 |
| C4 |
C5 |
H53 |
H52 |
242.3 |
240.1 |
| H51 |
C5 |
H53 |
H52 |
117.7 |
120.0 |
| C2' |
C1' |
C2 |
H2 |
285.1 |
299.9 |
| C2 |
C1' |
C2' |
H1'1 |
125.3 |
120.1 |
| C2 |
C1' |
C2' |
H1'2 |
234.8 |
240.1 |
| H1'1 |
C1' |
C2' |
H1'2 |
109.5 |
120.0 |
| C3' |
C2' |
C1' |
H2'1 |
234.7 |
240.0 |
| C3' |
C2' |
C1' |
H2'2 |
125.3 |
120.0 |
| C1' |
C2' |
C3' |
H3'1 |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
H3'2 |
305.2 |
300.1 |
| C1' |
C2' |
C3' |
H3'3 |
54.7 |
60.0 |
| H2'1 |
C2' |
C1' |
H2'2 |
250.6 |
240.0 |
| H1'1 |
C1' |
C2 |
H2 |
50.4 |
60.0 |
| C2 |
C1' |
H1'1 |
C2' |
238.3 |
239.9 |
| C2 |
C1' |
H1'1 |
H1'2 |
119.1 |
119.9 |
| C2' |
C1' |
H1'1 |
H1'2 |
240.8 |
240.0 |
| H1'1 |
C1' |
C2' |
C3' |
337.0 |
60.0 |
| H1'1 |
C1' |
C2' |
H2'1 |
102.3 |
180.0 |
| H1'1 |
C1' |
C2' |
H2'2 |
211.7 |
300.0 |
| H1'2 |
C1' |
C2 |
H2 |
159.9 |
180.0 |
| C2 |
C1' |
H1'2 |
C2' |
121.7 |
119.9 |
| C2 |
C1' |
H1'2 |
H1'1 |
240.9 |
240.0 |
| C2' |
C1' |
H1'2 |
H1'1 |
119.2 |
120.1 |
| H1'2 |
C1' |
C2' |
C3' |
227.5 |
299.9 |
| H1'2 |
C1' |
C2' |
H2'1 |
352.8 |
59.9 |
| H1'2 |
C1' |
C2' |
H2'2 |
102.2 |
180.0 |
| C3' |
C2' |
C1' |
H1'1 |
337.0 |
60.0 |
| C3' |
C2' |
C1' |
H1'2 |
227.5 |
299.9 |
| C1' |
C2' |
C3' |
H2'1 |
125.3 |
120.0 |
| C1' |
C2' |
C3' |
H2'2 |
234.7 |
240.0 |
| H2'1 |
C2' |
C3' |
H2'2 |
109.4 |
120.0 |
| H3'1 |
C3' |
C2' |
H3'2 |
234.7 |
239.9 |
| H3'1 |
C3' |
C2' |
H3'3 |
125.2 |
120.0 |
| H3'2 |
C3' |
C2' |
H3'3 |
250.5 |
240.0 |
| H2'1 |
C2' |
C1' |
H1'1 |
102.3 |
180.0 |
| H2'1 |
C2' |
C1' |
H1'2 |
352.8 |
59.9 |
| C1' |
C2' |
H2'1 |
C3' |
232.8 |
240.0 |
| C1' |
C2' |
H2'1 |
H2'2 |
116.4 |
120.0 |
| C3' |
C2' |
H2'1 |
H2'2 |
243.6 |
240.0 |
| H2'1 |
C2' |
C3' |
H3'1 |
54.7 |
60.0 |
| H2'1 |
C2' |
C3' |
H3'2 |
180.0 |
180.1 |
| H2'1 |
C2' |
C3' |
H3'3 |
289.4 |
300.0 |
| H2'2 |
C2' |
C1' |
H1'1 |
211.7 |
300.0 |
| H2'2 |
C2' |
C1' |
H1'2 |
102.2 |
180.0 |
| C1' |
C2' |
H2'2 |
C3' |
127.2 |
120.0 |
| C1' |
C2' |
H2'2 |
H2'1 |
243.6 |
240.0 |
| C3' |
C2' |
H2'2 |
H2'1 |
116.4 |
120.0 |
| H2'2 |
C2' |
C3' |
H3'1 |
305.3 |
300.0 |
| H2'2 |
C2' |
C3' |
H3'2 |
70.5 |
60.1 |
| H2'2 |
C2' |
C3' |
H3'3 |
180.0 |
180.0 |
| H3'1 |
C3' |
C2' |
H2'1 |
54.7 |
60.0 |
| H3'1 |
C3' |
C2' |
H2'2 |
305.3 |
300.0 |
| C2' |
C3' |
H3'1 |
H3'2 |
125.2 |
120.1 |
| C2' |
C3' |
H3'1 |
H3'3 |
234.8 |
240.1 |
| H3'2 |
C3' |
H3'1 |
H3'3 |
109.5 |
120.0 |
| H3'2 |
C3' |
C2' |
H2'1 |
180.0 |
180.1 |
| H3'2 |
C3' |
C2' |
H2'2 |
70.5 |
60.1 |
| C2' |
C3' |
H3'2 |
H3'1 |
232.9 |
239.9 |
| C2' |
C3' |
H3'2 |
H3'3 |
116.4 |
119.9 |
| H3'1 |
C3' |
H3'2 |
H3'3 |
243.5 |
240.0 |
| H3'3 |
C3' |
C2' |
H2'1 |
289.4 |
300.0 |
| H3'3 |
C3' |
C2' |
H2'2 |
180.0 |
180.0 |
| C2' |
C3' |
H3'3 |
H3'1 |
127.1 |
120.0 |
| C2' |
C3' |
H3'3 |
H3'2 |
243.6 |
240.0 |
| H3'1 |
C3' |
H3'3 |
H3'2 |
116.5 |
120.0 |