PDB Chemical Component 2OM

Ideal Model

Chemical Description

Name 5,6-dihydroorotidine 5'-monophosphate
Formula C10 H15 N2 O11 P
Formal charge 0
Molecular weight 370.207 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 39
Chiral atom count 5
Chiral atoms C4' C3' C2' C1' C6
Observed leaving atoms OP3 HO3' HOP3
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 6-carboxyuridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) (4R)-3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,6-dioxo-1,3-diazinane-4-carboxylic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2[C@H](CC(=O)NC2=O)C(O)=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2[CH](CC(=O)NC2=O)C(O)=O
Stereo SMILES (OpenEye) C1[C@@H](N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C(=O)O
InChI descriptor InChI=1S/C10H15N2O11P/c13-5-1-3(9(16)17)12(10(18)11-5)8-7(15)6(14)4(23-8)2-22-24(19,20)21/h3-4,6-8,14-15H,1-2H2,(H,16,17)(H,11,13,18)(H2,19,20,21)/t3-,4-,6-,7-,8-/m1/s1
InChIKey descriptor ZVESSEXVBFSYOC-NFTAXOAUSA-N

Status Information

Last modified 2011-06-04
Created 2009-02-06
Release status REL
Model PDB code 3G1F
Processing site RCSB