PDB Chemical Component 2OM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2OM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O5' 1.614 1.610
O5' C5' 1.428 1.429
C5' C4' 1.527 1.530
C5' H5' 1.101 1.090
C5' H5'A 1.100 1.090
C3' C4' 1.532 1.541
C4' O4' 1.475 1.438
C4' H4' 1.100 1.090
O4' C1' 1.467 1.443
O3' C3' 1.436 1.428
C3' C2' 1.521 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.424 1.429
C2' C1' 1.531 1.550
C2' H2' 1.100 1.089
O2' HO2' 0.950 0.967
C1' N1 1.501 1.465
C1' H1' 1.100 1.090
N1 C2 1.387 1.343
N1 C6 1.497 1.464
O2 C2 1.224 1.215
C2 N3 1.354 1.344
N3 C4 1.351 1.345
N3 HN3 1.000 0.970
C5 C4 1.513 1.508
C4 O4 1.208 1.213
C6 C5 1.553 1.527
C5 H5 1.100 1.091
C5 H5A 1.100 1.089
C6 C7 1.502 1.508
C6 H6 1.100 1.090
OP1 P 1.488 1.480
OP3 P 1.614 1.611
P OP2 1.621 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.968
O71 C7 1.208 1.207
C7 O72 1.342 1.342
O72 HO72 0.950 0.966

Bond Angles for 2OM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O5' C5' C4' 110.5 109.5
O5' C5' H5' 109.1 109.5
O5' C5' H5'A 108.9 109.5
C4' C5' H5' 109.1 109.5
C4' C5' H5'A 108.9 109.5
C5' C4' O4' 110.8 109.9
C5' C4' H4' 106.7 109.9
H5' C5' H5'A 110.3 109.5
C3' C4' H4' 110.8 110.0
O4' C4' H4' 111.0 109.9
C4' O4' C1' 108.2 107.0
O4' C1' C2' 104.7 103.5
O4' C1' N1 111.3 110.6
O4' C1' H1' 112.3 110.6
O3' C3' C2' 113.1 110.5
O3' C3' H3' 104.7 110.6
C2' C3' H3' 111.7 110.5
C3' C2' O2' 111.2 110.9
C3' C2' C1' 102.1 102.1
C3' C2' H2' 114.8 110.9
O2' C2' C1' 114.0 110.9
O2' C2' H2' 103.1 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 112.1 110.9
C2' C1' N1 112.1 110.6
C2' C1' H1' 111.5 110.6
N1 C1' H1' 105.0 110.7
C1' N1 C2 121.5 119.6
C1' N1 C6 117.3 119.5
C2 N1 C6 121.2 120.9
N1 C2 N3 121.6 121.6
N1 C6 C5 114.0 109.7
N1 C6 C7 111.6 109.5
N1 C6 H6 104.5 109.5
C2 N3 C4 122.3 121.0
C2 N3 HN3 118.9 119.5
C4 N3 HN3 118.8 119.6
N3 C4 O4 119.7 120.0
C5 C4 O4 119.4 120.0
C6 C5 H5 108.7 109.6
C6 C5 H5A 108.1 109.4
H5 C5 H5A 111.4 109.5
C7 C6 H6 110.4 109.4
C6 C7 O72 119.6 120.0
P OP2 HOP2 109.5 114.0
O71 C7 O72 119.4 120.0
C7 O72 HO72 109.5 117.0

Torsion Angles for 2OM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
P O5' C5' H5' 278.4 300.1
P O5' C5' H5'A 38.8 60.0
C4' C5' O5' H5' 240.0 239.9
C4' C5' O5' H5'A 119.6 120.0
O5' C5' C4' O4' 81.8 66.5
O5' C5' C4' H4' 320.9 305.4
H5' C5' O5' H5'A 239.6 240.0
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'A 240.4 240.0
H5' C5' C4' H5'A 120.4 120.0
C3' C4' C5' H4' 239.2 238.8
O4' C4' C5' H4' 121.0 121.0
C5' C4' O4' C1' 119.7 145.9
O5' C5' H5' C4' 239.2 240.0
O5' C5' H5' H5'A 119.6 120.0
C4' C5' H5' H5'A 240.4 240.0
H5' C5' C4' O4' 321.8 306.5
H5' C5' C4' H4' 200.9 185.4
O5' C5' H5'A C4' 120.6 120.0
O5' C5' H5'A H5' 240.3 240.0
C4' C5' H5'A H5' 119.7 120.1
H5'A C5' C4' O4' 201.4 186.5
H5'A C5' C4' H4' 80.5 65.4
C3' C4' C5' H5' 80.0 64.3
C3' C4' C5' H5'A 319.6 304.3
C5' C4' C3' H4' 118.4 121.1
O4' C4' C3' H4' 239.1 240.5
C3' C4' O4' C1' 358.9 26.5
O4' C4' C5' H5' 321.8 306.5
O4' C4' C5' H5'A 201.4 186.5
C5' C4' O4' H4' 241.6 239.0
C3' C4' O4' H4' 120.8 119.6
C4' O4' C1' C2' 337.3 319.9
C4' O4' C1' N1 215.9 201.4
C4' O4' C1' H1' 98.5 78.4
H4' C4' C5' H5' 200.9 185.4
H4' C4' C5' H5'A 80.5 65.4
C5' C4' H4' O4' 120.8 121.0
H4' C4' O4' C1' 238.1 267.0
C1' O4' C4' H4' 238.1 267.0
C3' C2' C1' O4' 37.5 37.1
O2' C2' C1' O4' 157.6 155.2
O4' C1' C2' H2' 274.2 278.9
C2' C1' O4' N1 121.3 118.5
C2' C1' O4' H1' 238.8 241.5
N1 C1' O4' H1' 117.5 123.0
O4' C1' N1 C2 43.5 53.5
O4' C1' N1 C6 224.1 233.3
O3' C3' C4' H4' 24.6 358.8
C2' C3' O3' H3' 121.8 122.6
O3' C3' C2' O2' 319.4 339.6
O3' C3' C2' C1' 81.4 97.8
O3' C3' C2' H2' 202.9 216.0
C2' C3' C4' H4' 145.4 117.5
O4' C1' C2' C3' 37.5 37.1
O3' C3' C2' H3' 242.2 237.3
O2' C2' C3' C1' 238.0 241.8
O2' C2' C3' H2' 116.5 123.6
C3' C2' O2' HO2' 338.1 298.5
C1' C2' C3' H2' 238.5 241.8
C3' C2' C1' N1 158.4 155.5
C3' C2' C1' H1' 275.8 278.5
H3' C3' C4' H4' 266.9 236.1
O3' C3' H3' C2' 122.8 122.6
H3' C3' C2' O2' 77.2 102.3
H3' C3' C2' C1' 199.2 220.5
H3' C3' C2' H2' 320.7 338.7
HO3' O3' C3' C2' 162.8 65.2
HO3' O3' C3' H3' 40.9 302.6
O4' C1' C2' O2' 157.6 155.2
O2' C2' C3' H3' 77.2 102.3
C3' C2' O2' C1' 114.7 112.7
C3' C2' O2' H2' 236.5 236.3
C1' C2' O2' H2' 121.7 123.7
O2' C2' C1' N1 278.4 273.7
O2' C2' C1' H1' 35.8 36.7
O4' C1' C2' N1 239.2 241.5
O4' C1' C2' H1' 121.7 118.6
C1' C2' C3' H3' 199.2 220.5
C3' C2' C1' O2' 240.0 241.8
C3' C2' C1' H2' 123.4 118.2
O2' C2' C1' H2' 243.4 236.4
C1' C2' O2' HO2' 223.3 185.8
N1 C1' C2' H1' 242.6 237.0
C2' C1' N1 C2 286.6 299.4
C2' C1' N1 C6 107.1 119.2
H2' C2' C3' H3' 320.7 338.7
C3' C2' H2' O2' 121.1 123.6
C3' C2' H2' C1' 244.2 247.3
O2' C2' H2' C1' 123.0 123.7
H2' C2' O2' HO2' 101.6 62.1
H2' C2' C1' N1 35.0 37.3
H2' C2' C1' H1' 152.4 160.3
HO2' O2' C2' C1' 223.3 185.8
HO2' O2' C2' H2' 101.6 62.1
O4' C1' N1 C2' 117.0 114.1
O4' C1' N1 H1' 238.2 237.0
N1 C1' C2' H2' 35.0 37.3
C2' C1' N1 H1' 121.3 123.0
C2 N1 C1' C6 179.5 180.2
C1' N1 C2 N3 171.5 174.3
C1' N1 C6 C5 198.9 215.7
C1' N1 C6 C7 75.6 95.8
C1' N1 C6 H6 316.3 335.9
O4' C1' H1' C2' 242.8 245.9
O4' C1' H1' N1 121.2 122.9
H1' C1' C2' H2' 152.4 160.3
C2' C1' H1' N1 238.4 237.1
H1' C1' N1 C2 165.3 176.5
H1' C1' N1 C6 345.8 356.2
C2 N1 C1' H1' 165.3 176.5
C1' N1 C2 C6 180.5 179.7
C2 N1 C6 C5 19.4 35.5
C2 N1 C6 C7 256.1 275.6
C2 N1 C6 H6 136.8 155.6
N1 C2 N3 C4 9.5 348.0
N1 C2 N3 HN3 189.4 168.0
C6 N1 C1' H1' 345.8 356.2
C1' N1 C6 C2 179.5 180.3
C6 N1 C2 N3 350.9 354.5
N1 C6 C5 H5 211.8 193.6
N1 C6 C5 H5A 90.8 73.6
C7 C6 N1 H6 119.3 120.0
N1 C6 C7 O72 203.5 180.0
O2 C2 N3 HN3 9.6 347.9
N3 C2 N1 C6 350.9 354.5
C4 N3 C2 HN3 180.0 180.0
C2 N3 C4 O4 158.9 175.5
C2 N3 C4 HN3 180.0 180.0
C5 C4 N3 O4 179.6 180.1
C2 N3 HN3 C4 180.0 180.0
HN3 N3 C4 O4 338.9 355.5
N1 C6 C5 C4 331.8 313.6
C5 C4 N3 HN3 158.5 175.6
N3 C4 C5 O4 180.4 179.9
O4 C4 N3 HN3 338.9 355.5
N1 C6 C5 C7 235.0 240.0
N1 C6 C5 H6 115.5 120.2
C6 C5 C4 O4 210.2 214.1
H5 C5 C6 H5A 121.0 120.1
H5 C5 C4 O4 330.2 334.2
C6 C5 H5 H5A 241.0 240.0
H5A C5 C4 O4 91.2 94.3
C6 C5 H5A H5 119.3 120.1
N1 C6 C7 C5 126.4 120.1
N1 C6 C7 H6 244.3 240.0
C7 C6 C5 H5 336.8 313.6
C7 C6 C5 H5A 215.7 193.6
O71 C7 C6 O72 179.8 180.0
C6 C7 O72 HO72 179.8 180.0
N1 C6 H6 C5 238.4 239.7
N1 C6 H6 C7 120.1 120.0
H6 C6 C5 H5 96.3 73.5
H6 C6 C5 H5A 335.3 313.4
H6 C6 C7 O72 319.2 300.0
OP1 P OP2 HOP2 160.9 180.0
OP3 P OP2 HOP2 280.2 300.0
O71 C7 C6 H6 138.9 120.0
C6 C7 O71 O72 180.2 180.0
O71 C7 O72 HO72 0.0 0.0
O72 C7 C6 H6 319.2 300.0