PDB Chemical Component 2NV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2NV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.451 1.469
N1 HN1 1.000 1.009
N1 HN1A 1.000 1.009
C3 C2 1.527 1.530
C2 C2A 1.537 1.530
C2 H2 1.100 1.089
O4 C3 1.394 1.429
C3 H3 1.100 1.091
C3 H3A 1.100 1.090
C5 O4 1.425 1.429
C5 C6 1.539 1.530
C5 H5 1.100 1.089
C5 H5A 1.100 1.090
O7 C6 1.393 1.429
C6 H6 1.100 1.090
C6 H6A 1.100 1.090
O7 C8 1.402 1.429
C8 C9 1.499 1.530
C8 H8 1.099 1.089
C8 H8A 1.100 1.091
O10 C9 1.375 1.429
C9 H9 1.100 1.090
C9 H9A 1.100 1.089
O10 C11 1.425 1.428
C11 C12 1.509 1.530
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C12 O13 1.386 1.429
C12 H12 1.100 1.091
C12 H12A 1.099 1.090
O13 C14 1.426 1.429
C14 C15 1.526 1.530
C14 H14 1.101 1.091
C14 H14A 1.101 1.090
C15 O16 1.412 1.429
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
O16 C17 1.411 1.429
C17 C18 1.535 1.531
C17 H17 1.100 1.090
C17 H17A 1.100 1.090
C18 H18 1.100 1.090
C18 H18A 1.100 1.090
C18 H18B 1.100 1.090
C2A H2A 1.100 1.090
C2A H2AA 1.100 1.090
C2A H2AB 1.100 1.090

Bond Angles for 2NV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 HN1 109.5 111.0
C2 N1 HN1A 109.5 111.0
N1 C2 C2A 106.1 109.4
N1 C2 H2 111.4 109.5
HN1 N1 HN1A 109.5 111.0
C3 C2 C2A 112.8 109.5
C3 C2 H2 110.3 109.5
C2A C2 H2 110.2 109.5
C2 C2A H2A 109.5 109.5
C2 C2A H2AA 109.5 109.5
C2 C2A H2AB 109.5 109.4
O4 C3 H3 108.6 109.4
O4 C3 H3A 108.6 109.5
H3 C3 H3A 109.5 109.4
C6 C5 H5 109.1 109.5
C6 C5 H5A 109.1 109.5
C5 C6 H6 109.6 109.4
C5 C6 H6A 109.6 109.5
H5 C5 H5A 109.5 109.5
O7 C6 H6 109.6 109.4
O7 C6 H6A 109.7 109.5
H6 C6 H6A 109.5 109.5
O7 C8 C9 106.8 109.5
O7 C8 H8 110.2 109.5
O7 C8 H8A 110.1 109.4
C9 C8 H8 110.1 109.5
C9 C8 H8A 110.2 109.4
C8 C9 H9 109.2 109.4
C8 C9 H9A 109.2 109.5
H8 C8 H8A 109.5 109.5
O10 C9 H9 109.2 109.5
O10 C9 H9A 109.2 109.5
H9 C9 H9A 109.5 109.5
O10 C11 C12 105.7 109.5
O10 C11 H11 110.4 109.5
O10 C11 H11A 110.4 109.5
C12 C11 H11 110.4 109.4
C12 C11 H11A 110.4 109.4
C11 C12 O13 117.2 109.5
C11 C12 H12 107.5 109.5
C11 C12 H12A 107.5 109.5
H11 C11 H11A 109.5 109.5
O13 C12 H12 107.5 109.4
O13 C12 H12A 107.5 109.5
C12 O13 C14 114.4 114.0
H12 C12 H12A 109.4 109.4
O13 C14 C15 107.7 109.5
O13 C14 H14 109.9 109.5
O13 C14 H14A 109.9 109.5
C15 C14 H14 109.9 109.5
C15 C14 H14A 109.9 109.5
C14 C15 O16 114.9 109.5
C14 C15 H15 108.1 109.5
C14 C15 H15A 108.1 109.5
H14 C14 H14A 109.5 109.4
O16 C15 H15 108.1 109.5
O16 C15 H15A 108.1 109.4
C15 O16 C17 114.6 114.0
H15 C15 H15A 109.5 109.4
O16 C17 C18 110.6 109.5
O16 C17 H17 109.2 109.5
O16 C17 H17A 109.2 109.4
C18 C17 H17 109.2 109.5
C18 C17 H17A 109.2 109.4
C17 C18 H18 109.5 109.4
C17 C18 H18A 109.5 109.4
C17 C18 H18B 109.4 109.5
H17 C17 H17A 109.5 109.5
H18 C18 H18A 109.4 109.5
H18 C18 H18B 109.5 109.5
H18A C18 H18B 109.5 109.5
H2A C2A H2AA 109.4 109.5
H2A C2A H2AB 109.5 109.5
H2AA C2A H2AB 109.5 109.4

Torsion Angles for 2NV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN1 N1 C2 HN1A 240.0 236.1
C3 C2 N1 C2A 239.9 240.0
C3 C2 N1 H2 119.9 120.0
C2A C2 N1 H2 240.0 240.0
N1 C2 C2A H2A 180.0 60.0
N1 C2 C2A H2AA 300.0 180.1
N1 C2 C2A H2AB 60.0 300.0
C2 N1 HN1 HN1A 120.0 123.9
HN1 N1 C2 C2A 300.1 296.1
HN1 N1 C2 H2 60.1 56.1
C2 N1 HN1A HN1 240.0 236.1
HN1A N1 C2 C2A 60.1 60.0
HN1A N1 C2 H2 180.1 180.0
C3 C2 N1 HN1 180.0 176.1
C3 C2 N1 HN1A 300.0 300.0
N1 C2 C3 C2A 115.6 120.0
N1 C2 C3 H2 239.3 240.0
C2A C2 C3 H2 123.7 120.0
C3 C2 C2A H2A 295.5 180.0
C3 C2 C2A H2AA 55.4 300.0
C3 C2 C2A H2AB 175.5 60.0
C2A C2 N1 HN1 300.1 296.1
C2A C2 N1 HN1A 60.1 60.0
N1 C2 C2A H2 120.8 120.0
C3 C2 C2A H2 236.2 240.0
H2A C2A C2 H2AA 240.0 240.0
H2A C2A C2 H2AB 120.0 120.0
H2AA C2A C2 H2AB 240.0 240.1
H2 C2 N1 HN1 60.1 56.1
H2 C2 N1 HN1A 180.1 180.0
N1 C2 H2 C2A 242.5 240.0
C3 C2 H2 C2A 125.2 120.0
H2 C2 C2A H2A 59.2 300.0
H2 C2 C2A H2AA 179.2 60.0
H2 C2 C2A H2AB 299.2 180.0
O4 C3 C2 C2A 89.2 175.0
O4 C3 C2 H2 325.4 55.0
H3 C3 O4 H3A 118.9 120.0
H3 C3 C2 C2A 209.7 295.0
H3 C3 C2 H2 85.9 175.0
O4 C3 H3 H3A 241.6 240.0
H3A C3 C2 C2A 328.6 55.0
H3A C3 C2 H2 204.9 295.0
O4 C3 H3A H3 118.4 120.0
C5 O4 C3 H3 76.1 60.0
C5 O4 C3 H3A 317.1 300.0
H5 C5 C6 H5A 119.6 120.0
O7 C6 C5 H6 240.1 240.1
O7 C6 C5 H6A 119.9 120.0
H6 C6 C5 H6A 239.8 240.0
C6 C5 H5 H5A 240.7 240.0
H5 C5 C6 H6 188.3 65.0
H5 C5 C6 H6A 308.5 185.0
C6 C5 H5A H5 119.3 120.0
H5A C5 C6 H6 68.7 304.9
H5A C5 C6 H6A 189.0 65.0
O7 C6 C5 H5 68.4 305.0
O7 C6 C5 H5A 308.9 185.0
C5 C6 O7 H6 119.9 119.9
C5 C6 O7 H6A 240.1 240.0
H6 C6 O7 H6A 120.2 120.0
H6 C6 C5 H5 188.3 65.0
H6 C6 C5 H5A 68.7 304.9
C5 C6 H6 H6A 120.3 120.1
O7 C6 H6 H6A 239.7 240.0
H6A C6 C5 H5 308.5 185.0
H6A C6 C5 H5A 189.0 65.0
C5 C6 H6A H6 239.7 240.0
O7 C6 H6A H6 120.3 120.0
C8 O7 C6 H6 57.0 60.0
C8 O7 C6 H6A 296.8 300.0
C9 C8 O7 H8 240.4 239.9
C9 C8 O7 H8A 119.6 119.9
O7 C8 C9 H9 193.6 185.0
O7 C8 C9 H9A 313.3 305.0
H8 C8 O7 H8A 239.2 240.0
O7 C8 C9 H8 119.6 120.0
O7 C8 C9 H8A 240.4 240.1
H8 C8 C9 H8A 120.8 120.0
O10 C9 C8 H9 239.8 240.0
O10 C9 C8 H9A 120.2 120.0
H9 C9 C8 H9A 240.3 240.0
O7 C8 H8 C9 242.5 240.0
O7 C8 H8 H8A 121.2 120.0
C9 C8 H8 H8A 238.7 240.0
H8 C8 C9 H9 74.0 65.0
H8 C8 C9 H9A 193.7 185.0
O7 C8 H8A C9 117.5 119.9
O7 C8 H8A H8 238.7 240.0
C9 C8 H8A H8 121.2 120.1
H8A C8 C9 H9 313.2 305.0
H8A C8 C9 H9A 72.8 65.0
O10 C9 C8 H8 313.8 305.0
O10 C9 C8 H8A 193.0 185.0
C8 C9 O10 H9 120.2 120.0
C8 C9 O10 H9A 239.8 240.0
H9 C9 O10 H9A 119.6 120.0
H9 C9 C8 H8 74.0 65.0
H9 C9 C8 H8A 313.2 305.0
C8 C9 H9 H9A 119.5 120.0
O10 C9 H9 H9A 240.6 240.0
H9A C9 C8 H8 193.7 185.0
H9A C9 C8 H8A 72.8 65.0
C8 C9 H9A H9 240.5 240.0
O10 C9 H9A H9 119.4 120.0
C11 O10 C9 H9 31.4 60.0
C11 O10 C9 H9A 271.8 300.0
C12 C11 O10 H11 240.6 240.0
C12 C11 O10 H11A 119.4 119.9
O10 C11 C12 O13 190.2 65.0
O10 C11 C12 H12 311.3 185.0
O10 C11 C12 H12A 69.1 305.0
H11 C11 O10 H11A 238.8 239.9
O10 C11 C12 H11 119.4 120.0
O10 C11 C12 H11A 240.6 240.0
H11 C11 C12 H11A 121.2 120.0
O13 C12 C11 H12 238.9 240.0
O13 C12 C11 H12A 121.1 120.0
C11 C12 O13 C14 169.8 180.0
H12 C12 C11 H12A 242.3 240.0
O10 C11 H11 C12 243.5 240.0
O10 C11 H11 H11A 121.8 120.1
C12 C11 H11 H11A 238.3 240.1
H11 C11 C12 O13 70.8 305.0
H11 C11 C12 H12 191.9 65.0
H11 C11 C12 H12A 309.6 185.0
O10 C11 H11A C12 116.5 120.0
O10 C11 H11A H11 238.2 239.9
C12 C11 H11A H11 121.7 119.9
H11A C11 C12 O13 309.6 185.0
H11A C11 C12 H12 70.7 305.0
H11A C11 C12 H12A 188.5 65.0
O13 C12 C11 H11 70.8 305.0
O13 C12 C11 H11A 309.6 185.0
C11 C12 O13 H12 121.1 120.0
C11 C12 O13 H12A 238.9 239.9
H12 C12 O13 H12A 117.7 119.9
C12 O13 C14 C15 284.7 180.0
C12 O13 C14 H14 44.5 300.0
C12 O13 C14 H14A 165.0 59.9
H12 C12 C11 H11 191.9 65.0
H12 C12 C11 H11A 70.7 305.0
C11 C12 H12 O13 233.0 240.0
C11 C12 H12 H12A 116.5 120.0
O13 C12 H12 H12A 243.5 240.0
H12 C12 O13 C14 48.6 60.0
H12A C12 C11 H11 309.6 185.0
H12A C12 C11 H11A 188.5 65.0
C11 C12 H12A O13 127.0 120.0
C11 C12 H12A H12 243.5 240.0
O13 C12 H12A H12 116.5 119.9
H12A C12 O13 C14 290.9 300.1
C14 O13 C12 H12 48.6 60.0
C14 O13 C12 H12A 290.9 300.1
C15 C14 O13 H14 240.3 240.0
C15 C14 O13 H14A 119.7 120.1
O13 C14 C15 O16 182.0 64.9
O13 C14 C15 H15 302.8 185.0
O13 C14 C15 H15A 61.2 305.0
H14 C14 O13 H14A 239.5 240.1
O13 C14 C15 H14 119.7 120.0
O13 C14 C15 H14A 240.3 239.9
H14 C14 C15 H14A 120.6 119.9
O16 C15 C14 H15 239.2 239.9
O16 C15 C14 H15A 120.8 120.0
C14 C15 O16 C17 180.3 180.0
H15 C15 C14 H15A 241.6 240.0
O13 C14 H14 C15 241.6 240.0
O13 C14 H14 H14A 120.8 120.0
C15 C14 H14 H14A 239.2 240.0
H14 C14 C15 O16 62.3 304.9
H14 C14 C15 H15 183.1 65.0
H14 C14 C15 H15A 301.5 185.0
O13 C14 H14A C15 118.4 120.1
O13 C14 H14A H14 239.2 240.0
C15 C14 H14A H14 120.8 120.0
H14A C14 C15 O16 301.7 185.0
H14A C14 C15 H15 62.5 305.1
H14A C14 C15 H15A 180.9 65.0
O16 C15 C14 H14 62.3 304.9
O16 C15 C14 H14A 301.7 185.0
C14 C15 O16 H15 120.8 120.1
C14 C15 O16 H15A 239.2 240.0
H15 C15 O16 H15A 118.4 120.0
C15 O16 C17 C18 271.9 180.0
C15 O16 C17 H17 32.1 300.1
C15 O16 C17 H17A 151.8 60.1
H15 C15 C14 H14 183.1 65.0
H15 C15 C14 H14A 62.5 305.1
C14 C15 H15 O16 235.1 240.0
C14 C15 H15 H15A 117.5 120.0
O16 C15 H15 H15A 242.5 240.0
H15 C15 O16 C17 59.5 59.9
H15A C15 C14 H14 301.5 185.0
H15A C15 C14 H14A 180.9 65.0
C14 C15 H15A O16 125.0 120.0
C14 C15 H15A H15 242.5 240.0
O16 C15 H15A H15 117.5 120.0
H15A C15 O16 C17 301.1 300.0
C17 O16 C15 H15 59.5 59.9
C17 O16 C15 H15A 301.1 300.0
C18 C17 O16 H17 239.8 240.0
C18 C17 O16 H17A 120.1 119.9
O16 C17 C18 H18 180.0 300.1
O16 C17 C18 H18A 300.0 60.1
O16 C17 C18 H18B 60.0 180.1
H17 C17 O16 H17A 240.3 240.0
O16 C17 C18 H17 120.1 120.1
O16 C17 C18 H17A 239.8 240.1
H17 C17 C18 H17A 119.7 120.0
H18 C18 C17 H18A 240.0 240.0
H18 C18 C17 H18B 120.0 120.0
H18A C18 C17 H18B 240.0 240.0
O16 C17 H17 C18 239.0 240.0
O16 C17 H17 H17A 119.5 120.0
C18 C17 H17 H17A 240.5 240.0
H17 C17 C18 H18 59.8 180.0
H17 C17 C18 H18A 179.8 300.0
H17 C17 C18 H18B 299.8 60.0
O16 C17 H17A C18 121.0 119.9
O16 C17 H17A H17 240.5 239.9
C18 C17 H17A H17 119.5 120.0
H17A C17 C18 H18 300.2 60.0
H17A C17 C18 H18A 60.2 180.0
H17A C17 C18 H18B 180.1 300.0
H18 C18 C17 H17 59.8 180.0
H18 C18 C17 H17A 300.2 60.0
C17 C18 H18 H18A 120.0 120.0
C17 C18 H18 H18B 240.0 240.0
H18A C18 H18 H18B 120.0 120.0
H18A C18 C17 H17 179.8 300.0
H18A C18 C17 H17A 60.2 180.0
C17 C18 H18A H18 239.9 240.0
C17 C18 H18A H18B 120.0 120.0
H18 C18 H18A H18B 240.0 239.9
H18B C18 C17 H17 299.8 60.0
H18B C18 C17 H17A 180.1 300.0
C17 C18 H18B H18 120.1 120.0
C17 C18 H18B H18A 240.0 240.0
H18 C18 H18B H18A 120.0 120.1
H2A C2A C2 H2 59.2 300.0
C2 C2A H2A H2AA 120.0 120.0
C2 C2A H2A H2AB 240.0 240.0
H2AA C2A H2A H2AB 120.0 120.0
H2AA C2A C2 H2 179.2 60.0
C2 C2A H2AA H2A 240.0 240.0
C2 C2A H2AA H2AB 120.0 119.9
H2A C2A H2AA H2AB 240.0 240.0
H2AB C2A C2 H2 299.2 180.0
C2 C2A H2AB H2A 120.0 120.0
C2 C2A H2AB H2AA 240.0 240.1
H2A C2A H2AB H2AA 120.0 120.0