Atom Nomenclature for 2NV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2NV

Atom Name (V3) Atom Name (V2)
N1 N1
C2 C2
C3 C3
O4 O4
C5 C5
C6 C6
O7 O7
C8 C8
C9 C9
O10 O10
C11 C11
C12 C12
O13 O13
C14 C14
C15 C15
O16 O16
C17 C17
C18 C18
C2A C2A
HN1 HN1
HN1A HN1A
H2 H2
H3 H3
H3A H3A
H5 H5
H5A H5A
H6 H6
H6A H6A
H8 H8
H8A H8A
H9 H9
H9A H9A
H11 H11
H11A H11A
H12 H12
H12A H12A
H14 H14
H14A H14A
H15 H15
H15A H15A
H17 H17
H17A H17A
H18 H18
H18A H18A
H18B H18B
H2A H2A
H2AA H2AA
H2AB H2AB