PDB Chemical Component 2MU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2MU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.359 1.345
N1 C6 1.371 1.368
N1 C1' 1.466 1.464
C2 N3 1.367 1.345
C2 O2 1.216 1.216
N3 C4 1.371 1.348
N3 HN3 1.020 0.970
C4 C5 1.433 1.415
C4 O4 1.217 1.218
C5 C5M 1.495 1.507
C5 C6 1.334 1.351
C5M HM51 1.114 1.091
C5M HM52 1.115 1.089
C5M HM53 1.115 1.091
C6 H6 1.102 1.080
C1' C2' 1.533 1.549
C1' O4' 1.419 1.443
C1' H1' 1.115 1.090
C2' O2' 1.410 1.429
C2' C3' 1.514 1.548
C2' H2' 1.116 1.090
O2' C6' 1.422 1.429
C3' C4' 1.516 1.540
C3' O3' 1.403 1.428
C3' H3' 1.115 1.090
C4' O4' 1.446 1.438
C4' C5' 1.507 1.530
C4' H4' 1.114 1.090
O3' HO3' 0.950 0.967
C5' O5' 1.422 1.428
C5' H5' 1.115 1.090
C5' H5'' 1.115 1.090
O5' P 1.594 1.609
C6' H6'1 1.115 1.090
C6' H6'2 1.115 1.090
C6' H6'3 1.116 1.090
P OP1 1.495 1.480
P OP2 1.489 1.610
P OP3 1.596 1.609
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.966

Bond Angles for 2MU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.4 120.6
C2 N1 C1' 116.8 119.7
N1 C2 N3 114.8 120.9
N1 C2 O2 122.4 119.5
C6 N1 C1' 121.8 119.7
N1 C6 C5 123.3 119.7
N1 C6 H6 119.8 120.2
N1 C1' C2' 108.6 110.8
N1 C1' O4' 108.7 110.6
N1 C1' H1' 109.7 110.5
N3 C2 O2 122.9 119.6
C2 N3 C4 127.0 120.3
C2 N3 HN3 116.4 119.9
C4 N3 HN3 116.7 119.8
N3 C4 C5 115.2 119.4
N3 C4 O4 120.0 120.4
C5 C4 O4 124.8 120.3
C4 C5 C5M 119.0 120.5
C4 C5 C6 118.1 119.1
C5M C5 C6 122.9 120.4
C5 C5M HM51 119.0 109.4
C5 C5M HM52 108.8 109.5
C5 C5M HM53 108.8 109.5
C5 C6 H6 116.9 120.1
HM51 C5M HM52 108.8 109.5
HM51 C5M HM53 108.8 109.4
HM52 C5M HM53 101.2 109.5
C2' C1' O4' 107.1 103.5
C2' C1' H1' 111.3 110.6
C1' C2' O2' 113.4 111.0
C1' C2' C3' 101.0 102.1
C1' C2' H2' 113.4 110.9
O4' C1' H1' 111.3 110.6
C1' O4' C4' 109.6 107.0
O2' C2' C3' 111.8 110.9
O2' C2' H2' 102.9 110.8
C2' O2' C6' 101.0 106.8
C3' C2' H2' 114.9 110.9
C2' C3' C4' 102.3 104.2
C2' C3' O3' 109.7 110.5
C2' C3' H3' 114.5 110.5
O2' C6' H6'1 101.0 109.5
O2' C6' H6'2 115.5 109.5
O2' C6' H6'3 115.4 109.5
C4' C3' O3' 111.3 110.6
C4' C3' H3' 113.1 110.5
C3' C4' O4' 103.8 107.3
C3' C4' C5' 115.6 109.9
C3' C4' H4' 109.2 109.9
O3' C3' H3' 106.0 110.4
C3' O3' HO3' 109.7 106.8
O4' C4' C5' 109.0 110.0
O4' C4' H4' 115.8 109.9
C5' C4' H4' 104.0 109.8
C4' C5' O5' 110.4 109.5
C4' C5' H5' 111.9 109.4
C4' C5' H5'' 111.9 109.5
O5' C5' H5' 111.8 109.4
O5' C5' H5'' 111.8 109.5
C5' O5' P 120.1 106.8
H5' C5' H5'' 98.6 109.5
O5' P OP1 110.0 109.5
O5' P OP2 108.0 109.5
O5' P OP3 103.8 109.5
H6'1 C6' H6'2 115.5 109.4
H6'1 C6' H6'3 115.5 109.5
H6'2 C6' H6'3 94.9 109.5
OP1 P OP2 119.8 109.4
OP1 P OP3 105.9 109.5
OP2 P OP3 108.1 109.5
P OP2 HOP2 107.9 106.8
P OP3 HOP3 103.8 106.8

Torsion Angles for 2MU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 177.2 179.7
C2 N1 C6 C5 355.9 0.2
C2 N1 C6 H6 175.9 180.3
C2 N1 C1' C2' 84.2 304.0
C2 N1 C1' O4' 200.5 58.3
C2 N1 C1' H1' 322.3 181.1
N3 C2 N1 O2 179.4 179.5
N1 C2 N3 C4 358.2 0.5
N1 C2 N3 HN3 178.2 180.3
C2 N1 C6 C1' 182.9 180.3
C6 N1 C2 N3 4.9 359.5
C6 N1 C2 O2 185.5 180.0
C6 N1 C1' C2' 267.0 124.3
C6 N1 C1' O4' 23.2 238.6
C6 N1 C1' H1' 145.1 1.4
C4 C5 C6 N1 359.8 0.0
C5M C5 C6 N1 179.7 180.0
C5 C6 N1 H6 180.0 179.9
C2 N1 C1' C6 177.2 179.7
C1' N1 C2 N3 187.6 179.8
C1' N1 C2 O2 8.2 0.3
C1' N1 C6 C5 173.0 179.9
C1' N1 C6 H6 353.0 360.0
C2' C1' N1 O4' 243.8 245.8
C2' C1' N1 H1' 121.9 122.9
N1 C1' C2' O2' 211.0 273.8
N1 C1' C2' C3' 91.3 155.6
N1 C1' C2' H2' 327.9 37.4
O4' C1' N1 H1' 238.1 237.1
N1 C1' O4' C4' 245.3 201.3
N3 C2 N1 C6 4.9 359.5
N3 C2 N1 C1' 187.6 179.8
N1 C2 N3 O2 180.6 180.5
C4 N3 C2 HN3 180.0 180.2
C2 N3 C4 C5 357.9 359.8
C2 N3 C4 O4 177.1 179.7
O2 C2 N1 C6 185.5 180.0
O2 C2 N1 C1' 8.2 0.3
N1 C2 O2 N3 179.4 179.5
O2 C2 N3 C4 177.6 180.0
O2 C2 N3 HN3 357.6 359.8
C4 N3 C2 O2 177.6 180.0
C2 N3 C4 HN3 180.0 179.8
C5 C4 N3 O4 180.8 180.0
N3 C4 C5 C5M 183.2 180.0
N3 C4 C5 C6 3.1 360.0
HN3 N3 C2 O2 357.6 359.8
C2 N3 HN3 C4 180.0 180.2
HN3 N3 C4 C5 177.8 180.0
HN3 N3 C4 O4 357.0 359.9
N1 C6 C5 C4 359.8 0.0
C5 C4 N3 HN3 177.8 180.0
N3 C4 C5 O4 179.2 180.0
C5M C5 C4 C6 180.1 180.0
C4 C5 C5M HM51 180.0 0.0
C4 C5 C5M HM52 305.3 120.0
C4 C5 C5M HM53 54.7 240.0
C4 C5 C6 H6 179.8 180.0
O4 C4 N3 HN3 357.0 359.9
N3 C4 O4 C5 180.9 180.0
O4 C4 C5 C5M 4.1 0.0
O4 C4 C5 C6 183.9 180.0
N1 C6 C5 C5M 179.7 180.0
C5M C5 C4 O4 4.1 0.0
C4 C5 C5M C6 179.9 180.0
C5M C5 C6 H6 359.7 359.9
HM51 C5M C5 HM52 234.7 240.0
HM51 C5M C5 HM53 125.3 120.0
HM52 C5M C5 HM53 250.6 240.0
C5 C6 N1 C1' 173.0 179.9
N1 C6 C5 H6 180.0 180.1
C6 C5 C4 O4 183.9 180.0
C4 C5 C6 C5M 180.1 180.0
C6 C5 C5M HM51 0.1 180.0
C6 C5 C5M HM52 125.4 300.1
C6 C5 C5M HM53 234.8 60.1
HM51 C5M C5 C6 0.1 180.0
C5 C5M HM51 HM52 125.3 120.0
C5 C5M HM51 HM53 234.7 240.0
HM52 C5M HM51 HM53 109.4 120.0
HM52 C5M C5 C6 125.4 300.1
C5 C5M HM52 HM51 228.9 240.0
C5 C5M HM52 HM53 114.4 120.0
HM51 C5M HM52 HM53 245.5 240.0
HM53 C5M C5 C6 234.8 60.1
C5 C5M HM53 HM51 131.0 120.0
C5 C5M HM53 HM52 245.5 240.0
HM51 C5M HM53 HM52 114.5 120.0
H6 C6 N1 C1' 353.0 360.0
N1 C6 H6 C5 180.0 179.9
N1 C1' C2' O4' 117.2 118.6
N1 C1' C2' H1' 239.1 237.1
O4' C1' C2' H1' 121.8 118.5
C2' C1' O4' C4' 2.5 320.0
O2' C2' C1' C3' 119.7 118.2
O2' C2' C1' H2' 243.2 236.4
C1' C2' O2' C6' 56.6 152.9
C3' C2' C1' H2' 123.4 118.1
C1' C2' C3' C4' 38.3 339.2
C1' C2' C3' O3' 156.5 98.0
C1' C2' C3' H3' 275.6 220.5
N1 C1' O4' C2' 242.8 241.3
N1 C1' O4' H1' 121.0 122.8
C2' C1' O4' H1' 238.1 241.5
O4' C1' C2' O2' 93.8 155.2
O4' C1' C2' C3' 334.1 36.9
O4' C1' C2' H2' 210.6 278.8
C3' C4' O4' C1' 22.2 26.5
C1' O4' C4' C5' 145.9 146.0
C1' O4' C4' H4' 262.6 267.0
N1 C1' H1' C2' 120.3 123.0
N1 C1' H1' O4' 239.6 237.1
C2' C1' H1' O4' 119.4 114.1
H1' C1' C2' O2' 332.0 36.7
H1' C1' C2' C3' 212.2 278.4
H1' C1' C2' H2' 88.8 160.3
H1' C1' O4' C4' 124.4 78.5
O2' C2' C1' O4' 93.8 155.2
O2' C2' C1' H1' 332.0 36.7
C1' C2' O2' C3' 246.7 247.2
C1' C2' O2' H2' 122.8 123.6
C3' C2' O2' H2' 236.2 236.4
O2' C2' C3' C4' 277.4 220.9
O2' C2' C3' O3' 35.6 339.7
O2' C2' C3' H3' 154.7 102.2
C2' O2' C6' H6'1 180.0 180.0
C2' O2' C6' H6'2 305.3 300.0
C2' O2' C6' H6'3 54.7 60.0
C3' C2' C1' O4' 334.1 36.9
C3' C2' C1' H1' 212.2 278.4
C1' C2' C3' O2' 120.9 118.3
C1' C2' C3' H2' 237.6 241.9
O2' C2' C3' H2' 116.8 123.6
C3' C2' O2' C6' 170.0 265.7
C4' C3' C2' O3' 241.8 241.2
C4' C3' C2' H3' 122.7 118.7
C2' C3' C4' O4' 322.1 358.0
C2' C3' C4' C5' 202.8 238.4
C2' C3' C4' H4' 86.1 117.4
O3' C3' C2' H3' 240.9 237.5
C2' C3' O3' HO3' 180.0 180.0
H2' C2' C1' O4' 210.6 278.8
H2' C2' C1' H1' 88.8 160.3
C1' C2' H2' O2' 237.1 236.3
C1' C2' H2' C3' 115.4 112.7
O2' C2' H2' C3' 238.3 236.4
H2' C2' O2' C6' 293.8 29.3
H2' C2' C3' C4' 160.6 97.3
H2' C2' C3' O3' 278.9 216.2
H2' C2' C3' H3' 37.9 338.6
C6' O2' C2' C3' 170.0 265.7
C6' O2' C2' H2' 293.8 29.3
H6'1 C6' O2' H6'2 234.7 240.1
H6'1 C6' O2' H6'3 125.3 120.0
H6'2 C6' O2' H6'3 250.6 239.9
C1' O4' C4' C3' 22.2 26.5
C4' C3' C2' H2' 160.6 97.3
C2' C3' C4' O3' 117.1 118.7
C2' C3' C4' H3' 236.3 241.3
O3' C3' C4' H3' 119.2 122.6
C4' C3' O3' HO3' 292.4 294.8
O4' C4' C3' C5' 119.3 119.6
O4' C4' C3' H4' 236.0 240.6
C5' C4' C3' H4' 116.7 121.0
C3' C4' C5' O5' 53.9 180.0
C3' C4' C5' H5' 179.1 300.0
C3' C4' C5' H5'' 288.6 60.0
O3' C3' C2' H2' 278.9 216.2
C2' C3' O3' C4' 247.5 245.2
C2' C3' O3' H3' 124.2 122.5
C4' C3' O3' H3' 236.6 237.4
O3' C3' C4' O4' 205.0 239.2
O3' C3' C4' C5' 85.7 119.7
O3' C3' C4' H4' 329.0 358.7
H3' C3' C2' H2' 37.9 338.6
C2' C3' H3' C4' 116.6 114.8
C2' C3' H3' O3' 238.9 237.5
C4' C3' H3' O3' 122.2 122.7
H3' C3' C4' O4' 85.7 116.7
H3' C3' C4' C5' 326.5 357.1
H3' C3' C4' H4' 209.7 236.1
H3' C3' O3' HO3' 55.8 57.5
C4' O4' C1' H1' 124.4 78.5
O4' C4' C3' O3' 205.0 239.2
O4' C4' C3' H3' 85.7 116.7
C3' C4' O4' C5' 236.3 240.5
C3' C4' O4' H4' 119.6 119.5
C5' C4' O4' H4' 243.3 239.0
O4' C4' C5' O5' 297.5 62.1
O4' C4' C5' H5' 62.7 182.1
O4' C4' C5' H5'' 172.3 302.1
C5' C4' C3' O3' 85.7 119.7
C5' C4' C3' H3' 326.5 357.1
C3' C4' C5' O4' 116.4 117.9
C3' C4' C5' H4' 240.4 239.0
O4' C4' C5' H4' 124.0 121.0
O5' C5' C4' H5' 234.8 240.0
O5' C5' C4' H5'' 125.3 120.0
C4' C5' O5' P 175.3 180.0
H5' C5' C4' H5'' 250.5 240.0
H4' C4' C3' O3' 329.0 358.7
H4' C4' C3' H3' 209.7 236.1
C3' C4' H4' O4' 243.4 242.1
C3' C4' H4' C5' 123.9 121.0
O4' C4' H4' C5' 240.5 238.9
H4' C4' C5' O5' 173.5 301.1
H4' C4' C5' H5' 298.7 61.0
H4' C4' C5' H5'' 48.3 181.0
HO3' O3' C3' H3' 55.8 57.5
O5' C5' C4' H4' 173.5 301.1
C4' C5' O5' H5' 125.2 119.9
C4' C5' O5' H5'' 234.7 240.0
H5' C5' O5' H5'' 109.5 120.0
C5' O5' P OP1 177.3 60.0
C5' O5' P OP2 44.8 180.0
C5' O5' P OP3 290.3 300.0
H5' C5' C4' H4' 298.7 61.0
C4' C5' H5' O5' 235.6 240.0
C4' C5' H5' H5'' 117.8 120.0
O5' C5' H5' H5'' 242.2 240.0
H5' C5' O5' P 50.1 60.0
H5'' C5' C4' H4' 48.3 181.0
C4' C5' H5'' O5' 124.5 120.1
C4' C5' H5'' H5' 242.2 240.0
O5' C5' H5'' H5' 117.7 120.0
H5'' C5' O5' P 300.6 300.0
P O5' C5' H5' 50.1 60.0
P O5' C5' H5'' 300.6 300.0
OP1 P O5' OP2 132.5 240.0
OP1 P O5' OP3 247.0 120.0
OP2 P O5' OP3 114.5 240.0
O5' P OP2 HOP2 180.0 180.0
O5' P OP3 HOP3 180.1 299.9
O2' C6' H6'1 H6'2 125.3 120.0
O2' C6' H6'1 H6'3 234.7 240.0
H6'2 C6' H6'1 H6'3 109.4 120.0
O2' C6' H6'2 H6'1 242.5 240.0
O2' C6' H6'2 H6'3 121.3 120.0
H6'1 C6' H6'2 H6'3 238.7 240.0
O2' C6' H6'3 H6'1 117.4 120.0
O2' C6' H6'3 H6'2 238.7 240.0
H6'1 C6' H6'3 H6'2 121.3 120.0
O5' P OP1 OP2 234.0 120.0
O5' P OP1 OP3 111.6 240.0
OP2 P OP1 OP3 237.6 119.9
OP1 P OP2 HOP2 53.0 300.0
OP1 P OP3 HOP3 296.0 179.9
O5' P OP2 OP1 127.0 240.0
O5' P OP2 OP3 248.3 120.1
OP1 P OP2 OP3 121.3 240.0
OP2 P OP3 HOP3 65.6 60.0
O5' P OP3 OP1 244.1 120.0
O5' P OP3 OP2 114.5 239.9
OP1 P OP3 OP2 230.4 119.9
OP3 P OP2 HOP2 291.6 59.9
HOP2 OP2 P OP3 291.6 59.9