Atom Nomenclature for 2MN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2MN

Atom Name (V3) Atom Name (V2)
OHD OHD
CB6 CB6
CB5 CB5
NC1 NC1
CC3 CC3
CA5 CA5
NC4 NC4
CC5 CC5
CC2 CC2
NO NO
OB OB
OA OA
HHD HHD
HB6 HB6
H6 H6
HB5 HB5
H5 H5
HA51 1HA5
HA52 2HA5
HA53 3HA5
HC5 HC5