PDB Chemical Component 2ML
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2ML
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.478 |
1.469 |
| N |
H2 |
1.020 |
1.008 |
| N |
H |
1.020 |
1.009 |
| CA |
CB1 |
1.537 |
1.528 |
| CA |
CB2 |
1.536 |
1.530 |
| CA |
C |
1.539 |
1.506 |
| CB1 |
CG |
1.532 |
1.529 |
| CB1 |
HB11 |
1.115 |
1.090 |
| CB1 |
HB12 |
1.116 |
1.090 |
| CB2 |
HB21 |
1.115 |
1.090 |
| CB2 |
HB22 |
1.115 |
1.089 |
| CB2 |
HB23 |
1.115 |
1.090 |
| CG |
CD1 |
1.531 |
1.530 |
| CG |
CD2 |
1.544 |
1.530 |
| CG |
HG |
1.115 |
1.090 |
| CD1 |
HD11 |
1.114 |
1.089 |
| CD1 |
HD12 |
1.115 |
1.090 |
| CD1 |
HD13 |
1.115 |
1.090 |
| CD2 |
HD21 |
1.114 |
1.090 |
| CD2 |
HD22 |
1.115 |
1.091 |
| CD2 |
HD23 |
1.115 |
1.090 |
| C |
O |
1.248 |
1.208 |
| C |
OXT |
1.253 |
1.342 |
| OXT |
HXT |
0.949 |
0.967 |
Bond Angles for 2ML
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H2 |
103.7 |
106.7 |
| CA |
N |
H |
114.4 |
106.6 |
| N |
CA |
CB1 |
103.7 |
109.5 |
| N |
CA |
CB2 |
109.0 |
109.4 |
| N |
CA |
C |
113.5 |
109.5 |
| H2 |
N |
H |
114.4 |
106.7 |
| CB1 |
CA |
CB2 |
108.3 |
109.5 |
| CB1 |
CA |
C |
111.7 |
109.5 |
| CA |
CB1 |
CG |
121.1 |
109.5 |
| CA |
CB1 |
HB11 |
108.1 |
109.5 |
| CA |
CB1 |
HB12 |
108.0 |
109.5 |
| CB2 |
CA |
C |
110.4 |
109.4 |
| CA |
CB2 |
HB21 |
109.1 |
109.4 |
| CA |
CB2 |
HB22 |
112.4 |
109.5 |
| CA |
CB2 |
HB23 |
112.4 |
109.4 |
| CA |
C |
O |
117.8 |
120.0 |
| CA |
C |
OXT |
119.0 |
120.0 |
| CG |
CB1 |
HB11 |
108.1 |
109.4 |
| CG |
CB1 |
HB12 |
108.1 |
109.5 |
| CB1 |
CG |
CD1 |
108.7 |
109.5 |
| CB1 |
CG |
CD2 |
111.2 |
109.5 |
| CB1 |
CG |
HG |
109.7 |
109.5 |
| HB11 |
CB1 |
HB12 |
101.8 |
109.4 |
| HB21 |
CB2 |
HB22 |
112.4 |
109.5 |
| HB21 |
CB2 |
HB23 |
112.4 |
109.5 |
| HB22 |
CB2 |
HB23 |
98.0 |
109.5 |
| CD1 |
CG |
CD2 |
112.0 |
109.4 |
| CD1 |
CG |
HG |
108.9 |
109.4 |
| CG |
CD1 |
HD11 |
108.7 |
109.5 |
| CG |
CD1 |
HD12 |
112.5 |
109.4 |
| CG |
CD1 |
HD13 |
112.5 |
109.4 |
| CD2 |
CG |
HG |
106.2 |
109.5 |
| CG |
CD2 |
HD21 |
111.3 |
109.5 |
| CG |
CD2 |
HD22 |
111.6 |
109.4 |
| CG |
CD2 |
HD23 |
111.6 |
109.5 |
| HD11 |
CD1 |
HD12 |
112.6 |
109.5 |
| HD11 |
CD1 |
HD13 |
112.5 |
109.5 |
| HD12 |
CD1 |
HD13 |
97.9 |
109.5 |
| HD21 |
CD2 |
HD22 |
111.5 |
109.5 |
| HD21 |
CD2 |
HD23 |
111.6 |
109.5 |
| HD22 |
CD2 |
HD23 |
98.8 |
109.5 |
| O |
C |
OXT |
123.2 |
120.0 |
| C |
OXT |
HXT |
119.0 |
120.0 |
Torsion Angles for 2ML
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H2 |
N |
CA |
H |
125.2 |
113.8 |
| CB1 |
CA |
N |
CB2 |
115.1 |
120.0 |
| CB1 |
CA |
N |
C |
238.6 |
239.9 |
| N |
CA |
CB1 |
CG |
77.9 |
56.1 |
| N |
CA |
CB1 |
HB11 |
203.2 |
296.2 |
| N |
CA |
CB1 |
HB12 |
312.6 |
176.2 |
| CB2 |
CA |
N |
C |
123.5 |
119.9 |
| N |
CA |
CB2 |
HB21 |
180.0 |
175.2 |
| N |
CA |
CB2 |
HB22 |
305.3 |
295.2 |
| N |
CA |
CB2 |
HB23 |
54.7 |
55.2 |
| N |
CA |
C |
O |
154.0 |
210.0 |
| N |
CA |
C |
OXT |
334.7 |
29.9 |
| CA |
N |
H2 |
H |
234.7 |
246.3 |
| H2 |
N |
CA |
CB1 |
180.0 |
43.2 |
| H2 |
N |
CA |
CB2 |
64.8 |
283.1 |
| H2 |
N |
CA |
C |
301.3 |
163.2 |
| CA |
N |
H |
H2 |
119.4 |
113.8 |
| H |
N |
CA |
CB1 |
54.7 |
289.4 |
| H |
N |
CA |
CB2 |
299.6 |
169.4 |
| H |
N |
CA |
C |
176.1 |
49.5 |
| CB1 |
CA |
N |
H2 |
180.0 |
43.2 |
| CB1 |
CA |
N |
H |
54.7 |
289.4 |
| N |
CA |
CB1 |
CB2 |
244.3 |
240.0 |
| N |
CA |
CB1 |
C |
122.6 |
120.1 |
| CB2 |
CA |
CB1 |
C |
238.3 |
240.0 |
| CB1 |
CA |
CB2 |
HB21 |
67.9 |
55.2 |
| CB1 |
CA |
CB2 |
HB22 |
193.2 |
175.2 |
| CB1 |
CA |
CB2 |
HB23 |
302.6 |
295.2 |
| CB1 |
CA |
C |
O |
270.8 |
330.1 |
| CB1 |
CA |
C |
OXT |
91.5 |
149.9 |
| CG |
CB1 |
CA |
HB11 |
234.7 |
120.0 |
| CG |
CB1 |
CA |
HB12 |
125.3 |
239.9 |
| CA |
CB1 |
CG |
CD1 |
164.6 |
156.7 |
| CA |
CB1 |
CG |
CD2 |
288.4 |
276.7 |
| CA |
CB1 |
CG |
HG |
45.6 |
36.7 |
| HB11 |
CB1 |
CA |
HB12 |
250.6 |
120.0 |
| CB2 |
CA |
N |
H2 |
64.8 |
283.1 |
| CB2 |
CA |
N |
H |
299.6 |
169.4 |
| N |
CA |
CB2 |
CB1 |
112.1 |
120.0 |
| N |
CA |
CB2 |
C |
234.7 |
240.0 |
| CB1 |
CA |
CB2 |
C |
122.5 |
120.0 |
| CB2 |
CA |
CB1 |
CG |
193.6 |
176.1 |
| CB2 |
CA |
CB1 |
HB11 |
318.9 |
56.1 |
| CB2 |
CA |
CB1 |
HB12 |
68.3 |
296.1 |
| CB2 |
CA |
C |
O |
31.3 |
90.1 |
| CB2 |
CA |
C |
OXT |
212.0 |
270.0 |
| HB21 |
CB2 |
CA |
HB22 |
234.7 |
239.9 |
| HB21 |
CB2 |
CA |
HB23 |
125.3 |
119.9 |
| HB22 |
CB2 |
CA |
HB23 |
250.6 |
240.0 |
| C |
CA |
N |
H2 |
301.3 |
163.2 |
| C |
CA |
N |
H |
176.1 |
49.5 |
| N |
CA |
C |
CB1 |
243.2 |
239.9 |
| N |
CA |
C |
CB2 |
122.8 |
119.9 |
| CB1 |
CA |
C |
CB2 |
239.5 |
240.0 |
| C |
CA |
CB1 |
CG |
315.3 |
296.1 |
| C |
CA |
CB1 |
HB11 |
80.6 |
176.1 |
| C |
CA |
CB1 |
HB12 |
190.0 |
56.1 |
| C |
CA |
CB2 |
HB21 |
305.3 |
295.1 |
| C |
CA |
CB2 |
HB22 |
70.6 |
55.2 |
| C |
CA |
CB2 |
HB23 |
180.0 |
175.2 |
| O |
C |
CA |
OXT |
179.3 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CG |
CB1 |
CA |
CB2 |
193.6 |
176.1 |
| CG |
CB1 |
CA |
C |
315.3 |
296.1 |
| CA |
CB1 |
CG |
HB11 |
125.3 |
240.0 |
| CA |
CB1 |
CG |
HB12 |
234.8 |
120.1 |
| HB11 |
CB1 |
CG |
HB12 |
109.5 |
240.1 |
| CD1 |
CG |
CB1 |
CD2 |
236.2 |
240.0 |
| CD1 |
CG |
CB1 |
HG |
119.0 |
120.0 |
| CB1 |
CG |
CD1 |
HD11 |
179.9 |
180.0 |
| CB1 |
CG |
CD1 |
HD12 |
305.3 |
300.1 |
| CB1 |
CG |
CD1 |
HD13 |
54.7 |
60.0 |
| CD2 |
CG |
CB1 |
HG |
242.8 |
240.0 |
| CB1 |
CG |
CD2 |
HD21 |
180.0 |
294.2 |
| CB1 |
CG |
CD2 |
HD22 |
305.3 |
54.2 |
| CB1 |
CG |
CD2 |
HD23 |
54.7 |
174.2 |
| HB11 |
CB1 |
CA |
CB2 |
318.9 |
56.1 |
| HB11 |
CB1 |
CA |
C |
80.6 |
176.1 |
| CA |
CB1 |
HB11 |
CG |
227.3 |
120.0 |
| CA |
CB1 |
HB11 |
HB12 |
113.6 |
240.0 |
| CG |
CB1 |
HB11 |
HB12 |
246.3 |
120.0 |
| HB11 |
CB1 |
CG |
CD1 |
39.3 |
276.7 |
| HB11 |
CB1 |
CG |
CD2 |
163.1 |
36.7 |
| HB11 |
CB1 |
CG |
HG |
280.3 |
156.7 |
| HB12 |
CB1 |
CA |
CB2 |
68.3 |
296.1 |
| HB12 |
CB1 |
CA |
C |
190.0 |
56.1 |
| CA |
CB1 |
HB12 |
CG |
132.7 |
239.9 |
| CA |
CB1 |
HB12 |
HB11 |
246.3 |
120.0 |
| CG |
CB1 |
HB12 |
HB11 |
113.7 |
240.1 |
| HB12 |
CB1 |
CG |
CD1 |
289.9 |
36.6 |
| HB12 |
CB1 |
CG |
CD2 |
53.6 |
156.6 |
| HB12 |
CB1 |
CG |
HG |
170.9 |
276.6 |
| HB21 |
CB2 |
CA |
C |
305.3 |
295.1 |
| CA |
CB2 |
HB21 |
HB22 |
125.3 |
120.1 |
| CA |
CB2 |
HB21 |
HB23 |
234.7 |
240.1 |
| HB22 |
CB2 |
HB21 |
HB23 |
109.4 |
120.0 |
| HB22 |
CB2 |
CA |
C |
70.6 |
55.2 |
| CA |
CB2 |
HB22 |
HB21 |
236.5 |
240.0 |
| CA |
CB2 |
HB22 |
HB23 |
118.3 |
120.0 |
| HB21 |
CB2 |
HB22 |
HB23 |
241.7 |
240.0 |
| HB23 |
CB2 |
CA |
C |
180.0 |
175.2 |
| CA |
CB2 |
HB23 |
HB21 |
123.5 |
119.9 |
| CA |
CB2 |
HB23 |
HB22 |
241.8 |
240.0 |
| HB21 |
CB2 |
HB23 |
HB22 |
118.3 |
120.1 |
| CD1 |
CG |
CB1 |
HB11 |
39.3 |
276.7 |
| CD1 |
CG |
CB1 |
HB12 |
289.9 |
36.6 |
| CB1 |
CG |
CD1 |
CD2 |
123.3 |
120.1 |
| CB1 |
CG |
CD1 |
HG |
240.5 |
240.0 |
| CD2 |
CG |
CD1 |
HG |
117.2 |
119.9 |
| CD1 |
CG |
CD2 |
HD21 |
301.9 |
54.3 |
| CD1 |
CG |
CD2 |
HD22 |
67.1 |
174.3 |
| CD1 |
CG |
CD2 |
HD23 |
176.6 |
294.2 |
| HD11 |
CD1 |
CG |
HD12 |
234.6 |
240.0 |
| HD11 |
CD1 |
CG |
HD13 |
125.2 |
120.0 |
| HD12 |
CD1 |
CG |
HD13 |
250.6 |
240.0 |
| CD2 |
CG |
CB1 |
HB11 |
163.1 |
36.7 |
| CD2 |
CG |
CB1 |
HB12 |
53.6 |
156.6 |
| CB1 |
CG |
CD2 |
CD1 |
238.1 |
239.9 |
| CB1 |
CG |
CD2 |
HG |
119.3 |
120.0 |
| CD1 |
CG |
CD2 |
HG |
241.2 |
240.1 |
| CD2 |
CG |
CD1 |
HD11 |
56.6 |
60.0 |
| CD2 |
CG |
CD1 |
HD12 |
182.0 |
180.0 |
| CD2 |
CG |
CD1 |
HD13 |
291.4 |
300.0 |
| HD21 |
CD2 |
CG |
HD22 |
234.8 |
240.0 |
| HD21 |
CD2 |
CG |
HD23 |
125.3 |
120.1 |
| HD22 |
CD2 |
CG |
HD23 |
250.6 |
240.0 |
| HG |
CG |
CB1 |
HB11 |
280.3 |
156.7 |
| HG |
CG |
CB1 |
HB12 |
170.9 |
276.6 |
| CB1 |
CG |
HG |
CD1 |
118.8 |
120.0 |
| CB1 |
CG |
HG |
CD2 |
239.7 |
240.0 |
| CD1 |
CG |
HG |
CD2 |
120.8 |
119.9 |
| HG |
CG |
CD1 |
HD11 |
299.4 |
300.0 |
| HG |
CG |
CD1 |
HD12 |
64.8 |
60.1 |
| HG |
CG |
CD1 |
HD13 |
174.2 |
180.0 |
| HG |
CG |
CD2 |
HD21 |
60.7 |
174.2 |
| HG |
CG |
CD2 |
HD22 |
185.9 |
294.2 |
| HG |
CG |
CD2 |
HD23 |
295.4 |
54.2 |
| HD11 |
CD1 |
CG |
CD2 |
56.6 |
60.0 |
| HD11 |
CD1 |
CG |
HG |
299.4 |
300.0 |
| CG |
CD1 |
HD11 |
HD12 |
125.3 |
120.0 |
| CG |
CD1 |
HD11 |
HD13 |
234.8 |
240.0 |
| HD12 |
CD1 |
HD11 |
HD13 |
109.4 |
120.0 |
| HD12 |
CD1 |
CG |
CD2 |
182.0 |
180.0 |
| HD12 |
CD1 |
CG |
HG |
64.8 |
60.1 |
| CG |
CD1 |
HD12 |
HD11 |
236.8 |
239.9 |
| CG |
CD1 |
HD12 |
HD13 |
118.4 |
119.9 |
| HD11 |
CD1 |
HD12 |
HD13 |
241.6 |
240.0 |
| HD13 |
CD1 |
CG |
CD2 |
291.4 |
300.0 |
| HD13 |
CD1 |
CG |
HG |
174.2 |
180.0 |
| CG |
CD1 |
HD13 |
HD11 |
123.1 |
120.0 |
| CG |
CD1 |
HD13 |
HD12 |
241.6 |
240.1 |
| HD11 |
CD1 |
HD13 |
HD12 |
118.5 |
120.0 |
| HD21 |
CD2 |
CG |
HG |
60.7 |
174.2 |
| CG |
CD2 |
HD21 |
HD22 |
125.3 |
119.9 |
| CG |
CD2 |
HD21 |
HD23 |
234.7 |
239.9 |
| HD22 |
CD2 |
HD21 |
HD23 |
109.4 |
120.0 |
| HD22 |
CD2 |
CG |
HG |
185.9 |
294.2 |
| CG |
CD2 |
HD22 |
HD21 |
234.9 |
240.0 |
| CG |
CD2 |
HD22 |
HD23 |
117.5 |
120.0 |
| HD21 |
CD2 |
HD22 |
HD23 |
242.6 |
240.0 |
| HD23 |
CD2 |
CG |
HG |
295.4 |
54.2 |
| CG |
CD2 |
HD23 |
HD21 |
125.2 |
120.0 |
| CG |
CD2 |
HD23 |
HD22 |
242.6 |
240.0 |
| HD21 |
CD2 |
HD23 |
HD22 |
117.4 |
120.0 |
| CA |
C |
O |
OXT |
180.8 |
179.9 |
| O |
C |
OXT |
HXT |
0.8 |
359.9 |
| CA |
C |
OXT |
O |
179.2 |
180.1 |