Atom Nomenclature for 2MK

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2MK

Atom Name (V3) Atom Name (V2)
C27 C27
O36 O36
O28 O28
C29 C29
C30 C30
C35 C35
C34 C34
C33 C33
C32 C32
C31 C31
N26 N26
C25 C25
C24 C24
O41 O41
C37 C37
C38 C38
C39 C39
C40 C40
N23 N23
C22 C22
C21 C21
O46 O46
C42 C42
C43 C43
C44 C44
C45 C45
C13 C13
C9 C9
C1 C1
O10 O10
C11 C11
C12 C12
C47 C47
C19 C19
N20 N20
O1 O1
H38 H38
H39 H39
H44 H44
H43 H43
H42 H42
H41 H41
H40 H40
H37 H37
H27 H27
H28 H28
H29 H29
H30 H30
H34 H34
H35 H35
H36 H36
H31 H31
H32 H32
H33 H33
H26 H26
H2 H2
H17 H17
H18 H18
H19 H19
H23 H23
H24 H24
H25 H25
H20 H20
H21 H21
H22 H22
H1 H1
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H45 H45