PDB Chemical Component 2MG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2MG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.463 1.479
P OP2 1.486 1.611
P OP3 1.633 1.609
P O5' 1.584 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.436 1.428
C5' C4' 1.507 1.530
C5' H5' 1.114 1.090
C5' H5'' 1.115 1.090
C4' O4' 1.456 1.444
C4' C3' 1.515 1.544
C4' H4' 1.116 1.089
O4' C1' 1.415 1.443
C3' O3' 1.424 1.430
C3' C2' 1.514 1.546
C3' H3' 1.114 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.422 1.430
C2' C1' 1.521 1.543
C2' H2' 1.115 1.091
O2' HO2' 0.951 0.967
C1' N9 1.460 1.465
C1' H1' 1.116 1.090
N9 C8 1.380 1.365
N9 C4 1.377 1.368
C8 N7 1.312 1.302
C8 H8 1.102 1.079
N7 C5 1.388 1.356
C5 C6 1.408 1.415
C5 C4 1.388 1.399
C6 O6 1.231 1.219
C6 N1 1.391 1.351
N1 C2 1.379 1.363
N1 HN1 1.019 0.970
C2 N2 1.341 1.372
C2 N3 1.329 1.315
N2 CM2 1.467 1.465
N2 HN2 1.020 0.970
CM2 HM21 1.115 1.090
CM2 HM22 1.115 1.090
CM2 HM23 1.116 1.090
N3 C4 1.348 1.338

Bond Angles for 2MG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.1 109.4
OP1 P OP3 110.9 109.5
OP1 P O5' 105.6 109.5
OP2 P OP3 107.1 109.5
OP2 P O5' 110.3 109.4
P OP2 HOP2 119.1 106.8
OP3 P O5' 102.6 109.5
P OP3 HOP3 110.9 106.8
P O5' C5' 119.6 106.8
O5' C5' C4' 110.3 109.5
O5' C5' H5' 111.9 109.5
O5' C5' H5'' 111.9 109.5
C4' C5' H5' 111.9 109.5
C4' C5' H5'' 111.9 109.4
C5' C4' O4' 108.4 110.4
C5' C4' C3' 114.6 110.5
C5' C4' H4' 105.5 110.3
H5' C5' H5'' 98.5 109.4
O4' C4' C3' 105.2 104.7
O4' C4' H4' 114.8 110.4
C4' O4' C1' 109.7 105.3
C3' C4' H4' 108.6 110.4
C4' C3' O3' 109.3 110.5
C4' C3' C2' 101.6 104.1
C4' C3' H3' 115.2 110.5
O4' C1' C2' 105.9 104.9
O4' C1' N9 108.3 110.4
O4' C1' H1' 116.0 110.4
O3' C3' C2' 111.3 110.6
O3' C3' H3' 106.2 110.4
C3' O3' HO3' 109.3 106.8
C2' C3' H3' 113.3 110.6
C3' C2' O2' 109.3 110.5
C3' C2' C1' 101.6 104.0
C3' C2' H2' 114.2 110.5
O2' C2' C1' 108.2 110.8
O2' C2' H2' 108.1 110.4
C2' O2' HO2' 109.3 106.8
C1' C2' H2' 115.1 110.4
C2' C1' N9 117.9 110.4
C2' C1' H1' 105.9 110.4
N9 C1' H1' 103.4 110.3
C1' N9 C8 126.3 126.2
C1' N9 C4 127.5 126.3
C8 N9 C4 106.2 107.5
N9 C8 N7 113.3 109.8
N9 C8 H8 125.5 125.1
N9 C4 C5 105.4 106.1
N9 C4 N3 126.2 134.2
N7 C8 H8 121.1 125.1
C8 N7 C5 104.2 109.3
N7 C5 C6 130.0 134.1
N7 C5 C4 110.9 107.3
C6 C5 C4 119.1 118.6
C5 C6 O6 128.2 120.8
C5 C6 N1 111.9 118.4
C5 C4 N3 128.4 119.7
O6 C6 N1 119.9 120.8
C6 N1 C2 124.8 120.3
C6 N1 HN1 118.0 119.9
C2 N1 HN1 117.1 119.8
N1 C2 N2 116.0 119.0
N1 C2 N3 123.9 121.9
N2 C2 N3 120.1 119.1
C2 N2 CM2 124.3 120.0
C2 N2 HN2 107.0 120.0
C2 N3 C4 111.9 121.1
CM2 N2 HN2 107.0 120.0
N2 CM2 HM21 124.3 109.5
N2 CM2 HM22 107.0 109.5
N2 CM2 HM23 107.0 109.4
HM21 CM2 HM22 107.0 109.5
HM21 CM2 HM23 107.0 109.5
HM22 CM2 HM23 102.6 109.5

Torsion Angles for 2MG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.1 120.0
OP2 P OP1 O5' 124.6 240.1
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 249.5 120.1
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 66.0 60.0
OP1 P OP2 OP3 126.7 240.0
OP1 P OP2 O5' 237.7 120.0
OP3 P OP2 O5' 110.9 240.0
OP2 P OP3 HOP3 311.5 60.0
OP2 P O5' C5' 296.1 180.0
OP1 P OP3 OP2 228.5 120.0
OP1 P OP3 O5' 112.4 240.0
OP2 P OP3 O5' 243.8 120.0
OP3 P OP2 HOP2 53.3 60.0
OP3 P O5' C5' 182.3 300.0
OP1 P O5' OP2 130.0 240.1
OP1 P O5' OP3 243.8 120.1
OP2 P O5' OP3 113.8 240.0
O5' P OP2 HOP2 302.4 180.0
O5' P OP3 HOP3 67.6 300.0
P O5' C5' C4' 148.4 180.0
P O5' C5' H5' 273.6 60.0
P O5' C5' H5'' 23.1 300.0
HOP2 OP2 P OP3 53.3 60.0
HOP2 OP2 P O5' 302.4 180.0
HOP3 OP3 P O5' 67.6 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 299.8 61.5
O5' C5' C4' C3' 57.0 176.9
O5' C5' C4' H4' 176.4 299.2
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.7 120.0
H5' C5' C4' H5'' 109.5 240.1
O4' C4' C5' C3' 242.8 244.6
O4' C4' C5' H4' 123.4 122.3
C5' C4' O4' C1' 134.9 159.5
C3' C4' C5' H4' 240.6 237.7
C5' C4' C3' O3' 91.2 98.3
C5' C4' C3' C2' 209.0 217.0
C5' C4' C3' H3' 331.9 335.8
O5' C5' H5' C4' 235.6 120.0
O5' C5' H5' H5'' 117.8 240.0
C4' C5' H5' H5'' 242.2 119.9
H5' C5' C4' O4' 174.6 181.5
H5' C5' C4' C3' 291.7 296.9
H5' C5' C4' H4' 51.2 59.2
O5' C5' H5'' C4' 124.4 240.0
O5' C5' H5'' H5' 242.1 120.0
C4' C5' H5'' H5' 117.8 240.1
H5'' C5' C4' O4' 65.1 301.4
H5'' C5' C4' C3' 182.3 56.8
H5'' C5' C4' H4' 301.7 179.1
O4' C4' C5' H5' 174.6 181.5
O4' C4' C5' H5'' 65.1 301.4
C5' C4' O4' C3' 123.1 119.0
C5' C4' O4' H4' 242.4 237.7
C3' C4' O4' H4' 119.3 118.8
O4' C4' C3' O3' 210.2 217.2
O4' C4' C3' C2' 327.9 335.9
O4' C4' C3' H3' 90.8 94.7
C4' O4' C1' C2' 13.5 319.5
C4' O4' C1' N9 246.2 200.6
C4' O4' C1' H1' 130.6 78.5
C3' C4' C5' H5' 291.7 296.9
C3' C4' C5' H5'' 182.3 56.8
C5' C4' C3' O4' 241.0 241.1
C5' C4' C3' H4' 117.7 122.3
O4' C4' C3' H4' 236.6 241.2
C3' C4' O4' C1' 11.8 40.5
O3' C3' C4' C2' 242.3 241.3
O3' C3' C4' H3' 119.4 122.6
C4' C3' O3' HO3' 179.9 180.0
C2' C3' C4' H3' 237.1 241.3
C4' C3' C2' O2' 284.9 241.2
C4' C3' C2' C1' 39.1 0.2
C4' C3' C2' H2' 163.7 118.7
H4' C4' C5' H5' 51.2 59.2
H4' C4' C5' H5'' 301.7 179.1
C5' C4' H4' O4' 119.2 122.3
C5' C4' H4' C3' 236.6 237.6
O4' C4' H4' C3' 117.4 115.3
H4' C4' O4' C1' 252.5 281.7
H4' C4' C3' O3' 333.6 336.0
H4' C4' C3' C2' 91.3 94.7
H4' C4' C3' H3' 214.2 213.5
C1' O4' C4' C3' 11.8 40.5
C1' O4' C4' H4' 252.5 281.7
C3' C2' C1' O4' 326.8 23.8
O2' C2' C1' O4' 81.8 142.6
O4' C1' C2' H2' 202.9 265.3
C2' C1' O4' N9 127.4 118.9
C2' C1' O4' H1' 243.0 241.1
N9 C1' O4' H1' 115.6 122.1
O4' C1' N9 C8 350.9 27.0
O4' C1' N9 C4 173.4 207.0
O3' C3' C4' H4' 333.6 336.0
C4' C3' O3' C2' 111.5 114.7
C4' C3' O3' H3' 235.2 237.4
C2' C3' O3' H3' 123.7 122.7
O3' C3' C2' O2' 41.2 359.9
O3' C3' C2' C1' 155.4 118.8
O3' C3' C2' H2' 279.9 237.3
C2' C3' C4' H4' 91.3 94.7
C4' C3' C2' O3' 243.8 241.3
C4' C3' C2' H3' 124.2 118.7
O4' C1' C2' C3' 326.8 23.8
O3' C3' C2' H3' 240.4 237.4
C2' C3' O3' HO3' 68.5 65.3
O2' C2' C3' C1' 245.8 241.1
O2' C2' C3' H2' 121.3 122.5
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 235.4 241.5
C3' C2' C1' N9 88.1 142.8
C3' C2' C1' H1' 203.1 264.9
H3' C3' C4' H4' 214.2 213.5
C4' C3' H3' O3' 121.1 122.6
C4' C3' H3' C2' 243.6 245.3
O3' C3' H3' C2' 122.5 122.7
H3' C3' O3' HO3' 304.8 302.6
H3' C3' C2' O2' 160.7 122.5
H3' C3' C2' C1' 274.9 241.4
H3' C3' C2' H2' 39.5 360.0
HO3' O3' C3' C2' 68.5 65.3
HO3' O3' C3' H3' 304.8 302.6
O4' C1' C2' O2' 81.8 142.6
O2' C2' C3' H3' 160.7 122.5
C3' C2' O2' C1' 109.9 114.7
C3' C2' O2' H2' 235.2 237.4
C1' C2' O2' H2' 125.3 122.7
O2' C2' C1' N9 203.1 261.5
O2' C2' C1' H1' 318.1 23.7
O4' C1' C2' N9 238.7 241.1
O4' C1' C2' H1' 123.7 118.9
C1' C2' C3' H3' 274.9 241.4
C3' C2' C1' O2' 245.0 241.3
C3' C2' C1' H2' 123.9 118.6
O2' C2' C1' H2' 238.9 237.3
C1' C2' O2' HO2' 70.2 183.8
N9 C1' C2' H1' 245.0 237.8
C2' C1' N9 C8 230.8 271.5
C2' C1' N9 C4 53.3 91.5
H2' C2' C3' H3' 39.5 360.0
C3' C2' H2' O2' 121.9 122.6
C3' C2' H2' C1' 243.0 245.5
O2' C2' H2' C1' 121.1 122.9
H2' C2' O2' HO2' 304.9 61.1
H2' C2' C1' N9 324.2 24.2
H2' C2' C1' H1' 79.2 146.4
HO2' O2' C2' C1' 70.2 183.8
HO2' O2' C2' H2' 304.9 61.1
O4' C1' N9 C2' 120.1 115.5
O4' C1' N9 H1' 236.5 237.8
N9 C1' C2' H2' 324.2 24.2
C2' C1' N9 H1' 116.4 122.3
C8 N9 C1' C4 177.5 180.0
C1' N9 C8 N7 183.7 180.0
C1' N9 C8 H8 3.7 0.0
C1' N9 C4 C5 176.0 180.0
C1' N9 C4 N3 355.1 0.1
O4' C1' H1' C2' 243.0 244.5
O4' C1' H1' N9 118.3 122.2
H1' C1' C2' H2' 79.2 146.4
C2' C1' H1' N9 235.4 237.7
H1' C1' N9 C8 114.4 149.2
H1' C1' N9 C4 297.0 329.2
C8 N9 C1' H1' 114.4 149.2
C1' N9 C8 C4 182.1 180.0
C8 N9 C4 C5 358.1 360.0
C8 N9 C4 N3 177.2 180.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.4 0.0
C4 N9 C1' H1' 297.0 329.2
C1' N9 C4 C8 177.9 180.0
C4 N9 C8 N7 1.6 360.0
C4 N9 C8 H8 181.6 180.0
N7 C5 C4 N9 1.7 0.0
C6 C5 C4 N9 180.1 180.0
C5 C4 N9 N3 180.9 179.9
C2 N3 C4 N9 180.7 180.0
N7 C8 N9 C4 1.6 360.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 181.1 180.0
C8 N7 C5 C4 359.3 360.0
H8 C8 N9 C4 181.6 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.5 180.0
N9 C4 C5 N7 1.7 0.0
C5 N7 C8 H8 179.5 180.0
C6 C5 N7 C4 181.9 180.0
N7 C5 C6 O6 356.6 359.9
N7 C5 C6 N1 177.1 179.7
N7 C5 C4 N3 182.6 180.0
N9 C4 C5 C6 180.1 180.0
N7 C5 C6 C4 178.0 180.0
C6 C5 C4 N3 1.0 359.9
O6 C6 C5 N1 179.5 180.2
C5 C6 N1 C2 0.5 0.5
C5 C6 N1 HN1 180.5 180.0
N9 C4 C5 N3 179.1 180.1
N7 C5 C4 C6 181.6 180.0
C4 C5 C6 O6 178.6 180.0
C4 C5 C6 N1 359.1 359.8
C2 N3 C4 C5 359.6 0.1
O6 C6 C5 C4 178.6 180.0
C5 C6 O6 N1 180.5 179.8
O6 C6 N1 C2 181.0 180.3
O6 C6 N1 HN1 1.0 359.8
N1 C6 C5 C4 359.1 359.8
C5 C6 N1 O6 179.6 180.2
C2 N1 C6 HN1 180.0 180.6
C6 N1 C2 N2 179.8 179.7
C6 N1 C2 N3 360.0 359.4
C6 N1 C2 HN1 180.0 179.4
N2 C2 N1 N3 179.8 180.3
N1 C2 N2 CM2 186.8 179.7
N1 C2 N2 HN2 61.5 359.7
N1 C2 N3 C4 359.9 0.3
C6 N1 HN1 C2 180.0 180.6
HN1 N1 C2 N2 359.8 0.3
HN1 N1 C2 N3 180.0 180.0
N2 C2 N1 HN1 359.8 0.3
N1 C2 N2 N3 180.2 179.7
N2 C2 N3 C4 180.1 180.0
CM2 N2 C2 HN2 125.2 180.0
C2 N2 CM2 HM21 179.9 180.0
C2 N2 CM2 HM22 305.3 300.0
C2 N2 CM2 HM23 54.7 60.0
N9 C4 N3 C2 180.7 180.0
C5 C4 N3 C2 359.6 0.1
N3 C2 N1 HN1 180.0 180.0
N1 C2 N3 N2 179.8 180.3
N3 C2 N2 CM2 6.6 0.0
N3 C2 N2 HN2 241.4 180.0
CM2 N2 C2 N3 6.6 0.0
C2 N2 CM2 HN2 234.7 180.0
HM21 CM2 N2 HM22 234.7 240.0
HM21 CM2 N2 HM23 125.2 120.0
HM22 CM2 N2 HM23 250.6 240.0
HN2 N2 C2 N3 241.4 180.0
C2 N2 HN2 CM2 135.1 180.0
HN2 N2 CM2 HM21 305.2 360.0
HN2 N2 CM2 HM22 70.5 120.0
HN2 N2 CM2 HM23 180.0 240.0
HM21 CM2 N2 HN2 305.2 360.0
N2 CM2 HM21 HM22 125.3 120.0
N2 CM2 HM21 HM23 234.7 240.0
HM22 CM2 HM21 HM23 109.4 120.0
HM22 CM2 N2 HN2 70.5 120.0
N2 CM2 HM22 HM21 224.8 240.0
N2 CM2 HM22 HM23 112.4 120.0
HM21 CM2 HM22 HM23 247.6 240.0
HM23 CM2 N2 HN2 180.0 240.0
N2 CM2 HM23 HM21 135.1 120.0
N2 CM2 HM23 HM22 247.6 239.9
HM21 CM2 HM23 HM22 112.5 120.0
N9 C4 N3 C5 181.1 179.9