PDB Chemical Component 2MA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2MA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.491 1.479
P OP2 1.485 1.610
P OP3 1.604 1.609
P O5' 1.589 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.431 1.427
C5' C4' 1.508 1.530
C5' H5' 1.116 1.090
C5' H5'' 1.115 1.090
C4' O4' 1.443 1.444
C4' C3' 1.524 1.544
C4' H4' 1.115 1.090
O4' C1' 1.405 1.443
C3' O3' 1.422 1.429
C3' C2' 1.523 1.546
C3' H3' 1.116 1.091
O3' HO3' 0.950 0.967
C2' O2' 1.412 1.429
C2' C1' 1.532 1.544
C2' H2' 1.116 1.090
O2' HO2' 0.950 0.967
C1' N9 1.459 1.464
C1' H1' 1.114 1.090
N9 C8 1.374 1.366
N9 C4 1.374 1.355
C8 N7 1.311 1.309
C8 H8 1.103 1.080
N7 C5 1.388 1.334
C5 C6 1.403 1.474
C5 C4 1.382 1.407
C6 N6 1.339 1.313
C6 N1 1.354 1.399
N6 HN6 1.019 0.970
N1 C2 1.337 1.362
N1 HN1 1.020 0.970
C2 CM2 1.433 1.506
C2 N3 1.326 1.310
CM2 HM21 1.115 1.090
CM2 HM22 1.116 1.091
CM2 HM23 1.115 1.090
N3 C4 1.348 1.345

Bond Angles for 2MA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.1 109.5
OP1 P OP3 108.4 109.5
OP1 P O5' 111.3 109.5
OP2 P OP3 108.1 109.5
OP2 P O5' 107.1 109.5
P OP2 HOP2 119.2 106.8
OP3 P O5' 101.3 109.5
P OP3 HOP3 108.3 106.8
P O5' C5' 118.9 106.8
O5' C5' C4' 110.8 109.5
O5' C5' H5' 111.7 109.5
O5' C5' H5'' 111.7 109.5
C4' C5' H5' 111.7 109.4
C4' C5' H5'' 111.7 109.4
C5' C4' O4' 108.9 110.4
C5' C4' C3' 117.0 110.5
C5' C4' H4' 103.8 110.2
H5' C5' H5'' 98.7 109.5
O4' C4' C3' 107.3 104.8
O4' C4' H4' 114.3 110.4
C4' O4' C1' 109.6 105.3
C3' C4' H4' 105.7 110.4
C4' C3' O3' 107.7 110.5
C4' C3' C2' 102.6 104.1
C4' C3' H3' 114.3 110.5
O4' C1' C2' 107.1 104.9
O4' C1' N9 106.3 110.4
O4' C1' H1' 115.4 110.4
O3' C3' C2' 107.9 110.6
O3' C3' H3' 109.7 110.5
C3' O3' HO3' 107.7 106.7
C2' C3' H3' 114.2 110.6
C3' C2' O2' 111.0 110.5
C3' C2' C1' 102.0 104.0
C3' C2' H2' 113.5 110.5
O2' C2' C1' 109.9 110.8
O2' C2' H2' 106.0 110.5
C2' O2' HO2' 111.0 106.8
C1' C2' H2' 114.5 110.4
C2' C1' N9 115.8 110.4
C2' C1' H1' 105.9 110.3
N9 C1' H1' 106.7 110.4
C1' N9 C8 129.4 126.3
C1' N9 C4 124.7 126.3
C8 N9 C4 105.9 107.4
N9 C8 N7 113.6 109.7
N9 C8 H8 125.3 125.1
N9 C4 C5 105.8 105.9
N9 C4 N3 127.3 133.4
N7 C8 H8 121.1 125.1
C8 N7 C5 104.0 109.1
N7 C5 C6 132.7 133.5
N7 C5 C4 110.7 107.8
C6 C5 C4 116.7 118.7
C5 C6 N6 123.4 123.6
C5 C6 N1 117.9 112.7
C5 C4 N3 126.9 120.6
N6 C6 N1 118.7 123.7
C6 N6 HN6 51.0 120.0
C6 N1 C2 118.6 118.7
C6 N1 HN1 108.9 120.6
C2 N1 HN1 108.9 120.7
N1 C2 CM2 114.1 118.3
N1 C2 N3 129.2 123.4
CM2 C2 N3 116.5 118.2
C2 CM2 HM21 114.1 109.5
C2 CM2 HM22 110.5 109.5
C2 CM2 HM23 110.5 109.5
C2 N3 C4 110.7 119.3
HM21 CM2 HM22 110.5 109.4
HM21 CM2 HM23 110.6 109.5
HM22 CM2 HM23 99.8 109.4

Torsion Angles for 2MA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 124.0 120.0
OP2 P OP1 O5' 234.6 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 110.6 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 174.5 60.0
OP1 P OP2 OP3 235.8 240.0
OP1 P OP2 O5' 127.4 120.0
OP3 P OP2 O5' 251.6 240.0
OP2 P OP3 HOP3 49.6 60.0
OP2 P O5' C5' 306.3 180.0
OP1 P OP3 OP2 130.4 120.0
OP1 P OP3 O5' 242.8 240.0
OP2 P OP3 O5' 112.4 120.0
OP3 P OP2 HOP2 304.1 60.0
OP3 P O5' C5' 59.5 300.0
OP1 P O5' OP2 228.1 240.0
OP1 P O5' OP3 115.0 120.0
OP2 P O5' OP3 246.9 240.0
O5' P OP2 HOP2 52.6 180.0
O5' P OP3 HOP3 297.2 300.0
P O5' C5' C4' 241.8 180.0
P O5' C5' H5' 7.1 60.0
P O5' C5' H5'' 116.5 300.0
HOP2 OP2 P OP3 304.1 60.0
HOP2 OP2 P O5' 52.6 180.0
HOP3 OP3 P O5' 297.2 300.0
C4' C5' O5' H5' 234.7 120.0
C4' C5' O5' H5'' 125.3 240.0
O5' C5' C4' O4' 284.3 61.4
O5' C5' C4' C3' 46.1 176.9
O5' C5' C4' H4' 162.1 299.2
H5' C5' O5' H5'' 250.6 120.0
O5' C5' C4' H5' 125.3 240.0
O5' C5' C4' H5'' 234.7 120.0
H5' C5' C4' H5'' 109.5 240.0
O4' C4' C5' C3' 238.2 244.5
O4' C4' C5' H4' 122.2 122.2
C5' C4' O4' C1' 122.9 159.5
C3' C4' C5' H4' 244.0 237.7
C5' C4' C3' O3' 147.6 98.3
C5' C4' C3' C2' 261.2 217.1
C5' C4' C3' H3' 25.4 335.7
O5' C5' H5' C4' 235.2 120.1
O5' C5' H5' H5'' 117.6 240.0
C4' C5' H5' H5'' 242.4 119.9
H5' C5' C4' O4' 159.0 181.5
H5' C5' C4' C3' 280.9 297.0
H5' C5' C4' H4' 36.8 59.3
O5' C5' H5'' C4' 124.8 240.0
O5' C5' H5'' H5' 242.4 120.0
C4' C5' H5'' H5' 117.6 240.1
H5'' C5' C4' O4' 49.6 301.4
H5'' C5' C4' C3' 171.4 56.9
H5'' C5' C4' H4' 287.4 179.2
O4' C4' C5' H5' 159.0 181.5
O4' C4' C5' H5'' 49.6 301.4
C5' C4' O4' C3' 127.6 119.0
C5' C4' O4' H4' 244.4 237.9
C3' C4' O4' H4' 116.8 118.9
O4' C4' C3' O3' 270.3 217.2
O4' C4' C3' C2' 23.9 336.0
O4' C4' C3' H3' 148.1 94.7
C4' O4' C1' C2' 343.3 319.6
C4' O4' C1' N9 218.9 200.7
C4' O4' C1' H1' 100.9 78.4
C3' C4' C5' H5' 280.9 297.0
C3' C4' C5' H5'' 171.4 56.9
C5' C4' C3' O4' 237.3 241.1
C5' C4' C3' H4' 115.0 122.2
O4' C4' C3' H4' 237.7 241.1
C3' C4' O4' C1' 355.3 40.5
O3' C3' C4' C2' 246.3 241.2
O3' C3' C4' H3' 122.1 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 235.8 241.3
C4' C3' C2' O2' 210.7 241.2
C4' C3' C2' C1' 327.7 0.1
C4' C3' C2' H2' 91.4 118.6
H4' C4' C5' H5' 36.8 59.3
H4' C4' C5' H5'' 287.4 179.2
C5' C4' H4' O4' 118.6 122.2
C5' C4' H4' C3' 236.3 237.6
O4' C4' H4' C3' 117.7 115.4
H4' C4' O4' C1' 238.5 281.6
H4' C4' C3' O3' 32.6 336.1
H4' C4' C3' C2' 146.3 94.8
H4' C4' C3' H3' 270.5 213.5
C1' O4' C4' C3' 355.3 40.5
C1' O4' C4' H4' 238.5 281.6
C3' C2' C1' O4' 31.1 23.9
O2' C2' C1' O4' 148.9 142.6
O4' C1' C2' H2' 268.1 265.3
C2' C1' O4' N9 124.4 118.9
C2' C1' O4' H1' 242.4 241.2
N9 C1' O4' H1' 118.0 122.3
O4' C1' N9 C8 87.6 27.0
O4' C1' N9 C4 270.5 207.0
O3' C3' C4' H4' 32.6 336.1
C4' C3' O3' C2' 110.1 114.7
C4' C3' O3' H3' 235.1 237.4
C2' C3' O3' H3' 124.9 122.7
O3' C3' C2' O2' 324.2 359.9
O3' C3' C2' C1' 81.2 118.8
O3' C3' C2' H2' 204.9 237.3
C2' C3' C4' H4' 146.3 94.8
C4' C3' C2' O3' 246.4 241.3
C4' C3' C2' H3' 124.2 118.6
O4' C1' C2' C3' 31.1 23.9
O3' C3' C2' H3' 237.8 237.3
C2' C3' O3' HO3' 69.9 65.3
O2' C2' C3' C1' 243.0 241.1
O2' C2' C3' H2' 119.3 122.6
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 236.3 241.5
C3' C2' C1' N9 149.5 142.8
C3' C2' C1' H1' 267.4 265.0
H3' C3' C4' H4' 270.5 213.5
C4' C3' H3' O3' 121.0 122.6
C4' C3' H3' C2' 242.2 245.4
O3' C3' H3' C2' 121.2 122.8
H3' C3' O3' HO3' 305.0 302.6
H3' C3' C2' O2' 86.4 122.6
H3' C3' C2' C1' 203.4 241.5
H3' C3' C2' H2' 327.1 360.0
HO3' O3' C3' C2' 69.9 65.3
HO3' O3' C3' H3' 305.0 302.6
O4' C1' C2' O2' 148.9 142.6
O2' C2' C3' H3' 86.4 122.6
C3' C2' O2' C1' 112.0 114.7
C3' C2' O2' H2' 236.4 237.4
C1' C2' O2' H2' 124.3 122.7
O2' C2' C1' N9 267.3 261.5
O2' C2' C1' H1' 25.3 23.7
O4' C1' C2' N9 241.6 241.1
O4' C1' C2' H1' 123.6 118.9
C1' C2' C3' H3' 203.4 241.5
C3' C2' C1' O2' 242.2 241.3
C3' C2' C1' H2' 123.0 118.5
O2' C2' C1' H2' 240.8 237.2
C1' C2' O2' HO2' 68.0 183.9
N9 C1' C2' H1' 242.0 237.7
C2' C1' N9 C8 328.7 271.5
C2' C1' N9 C4 151.6 91.5
H2' C2' C3' H3' 327.1 360.0
C3' C2' H2' O2' 122.1 122.5
C3' C2' H2' C1' 243.5 245.5
O2' C2' H2' C1' 121.4 123.0
H2' C2' O2' HO2' 303.7 61.1
H2' C2' C1' N9 26.5 24.2
H2' C2' C1' H1' 144.5 146.5
HO2' O2' C2' C1' 68.0 183.9
HO2' O2' C2' H2' 303.7 61.1
O4' C1' N9 C2' 118.9 115.5
O4' C1' N9 H1' 236.4 237.7
N9 C1' C2' H2' 26.5 24.2
C2' C1' N9 H1' 117.5 122.2
C8 N9 C1' C4 177.1 180.0
C1' N9 C8 N7 184.1 180.4
C1' N9 C8 H8 4.1 0.4
C1' N9 C4 C5 176.1 179.4
C1' N9 C4 N3 357.3 0.1
O4' C1' H1' C2' 241.7 244.5
O4' C1' H1' N9 117.8 122.3
H1' C1' C2' H2' 144.5 146.5
C2' C1' H1' N9 236.1 237.7
H1' C1' N9 C8 211.2 149.2
H1' C1' N9 C4 34.1 329.3
C8 N9 C1' H1' 211.2 149.2
C1' N9 C8 C4 182.4 180.0
C8 N9 C4 C5 358.4 359.4
C8 N9 C4 N3 179.6 180.1
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 359.1 0.1
C4 N9 C1' H1' 34.1 329.3
C1' N9 C4 C8 177.7 180.0
C4 N9 C8 N7 1.7 0.3
C4 N9 C8 H8 181.6 180.4
N7 C5 C4 N9 1.2 0.7
C6 C5 C4 N9 181.5 180.7
C5 C4 N9 N3 178.7 179.2
C2 N3 C4 N9 178.3 187.1
N7 C8 N9 C4 1.7 0.3
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 179.4 179.4
C8 N7 C5 C4 359.8 359.5
H8 C8 N9 C4 181.6 180.4
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 179.1 180.0
N9 C4 C5 N7 1.2 0.7
C5 N7 C8 H8 179.1 180.0
C6 C5 N7 C4 179.6 179.9
N7 C5 C6 N6 0.2 341.9
N7 C5 C6 N1 180.2 161.6
N7 C5 C4 N3 179.9 180.0
N9 C4 C5 C6 181.5 180.7
N7 C5 C6 C4 180.4 180.1
C6 C5 C4 N3 0.3 0.1
N6 C6 C5 N1 180.0 180.3
C5 C6 N6 HN6 96.9 180.1
C5 C6 N1 C2 0.0 29.8
C5 C6 N1 HN1 234.8 209.3
N9 C4 C5 N3 181.3 180.6
N7 C5 C4 C6 179.7 179.9
C4 C5 C6 N6 179.8 161.8
C4 C5 C6 N1 359.8 341.6
C2 N3 C4 C5 359.8 8.0
N6 C6 C5 C4 179.8 161.8
C5 C6 N6 N1 180.0 179.7
N6 C6 N1 C2 180.0 209.5
N6 C6 N1 HN1 54.8 29.0
N1 C6 C5 C4 359.8 341.6
C5 C6 N1 N6 180.0 180.3
N1 C6 N6 HN6 276.9 0.4
C2 N1 C6 HN1 125.3 180.5
C6 N1 C2 CM2 175.7 155.9
C6 N1 C2 N3 0.1 335.6
HN6 N6 C6 N1 276.9 0.4
C6 N1 C2 HN1 234.7 179.5
CM2 C2 N1 N3 175.6 180.3
N1 C2 CM2 HM21 180.1 179.7
N1 C2 CM2 HM22 305.2 299.7
N1 C2 CM2 HM23 54.7 59.7
N1 C2 N3 C4 360.0 4.0
C6 N1 HN1 C2 130.7 180.5
HN1 N1 C2 CM2 301.0 336.4
HN1 N1 C2 N3 125.3 156.1
CM2 C2 N1 HN1 301.0 336.4
N1 C2 CM2 N3 183.8 179.7
CM2 C2 N3 C4 184.5 183.7
HM21 CM2 C2 HM22 234.8 240.0
HM21 CM2 C2 HM23 125.3 120.1
HM22 CM2 C2 HM23 250.5 240.1
N9 C4 N3 C2 178.3 187.1
C5 C4 N3 C2 359.8 8.0
N3 C2 N1 HN1 125.3 156.1
N1 C2 N3 CM2 175.5 180.3
N3 C2 CM2 HM21 356.3 0.0
N3 C2 CM2 HM22 121.5 120.0
N3 C2 CM2 HM23 231.0 239.9
HM21 CM2 C2 N3 356.3 0.0
C2 CM2 HM21 HM22 125.2 120.0
C2 CM2 HM21 HM23 234.7 239.9
HM22 CM2 HM21 HM23 109.6 119.9
HM22 CM2 C2 N3 121.5 120.0
C2 CM2 HM22 HM21 232.8 240.0
C2 CM2 HM22 HM23 116.3 120.0
HM21 CM2 HM22 HM23 243.5 240.0
HM23 CM2 C2 N3 231.0 239.9
C2 CM2 HM23 HM21 127.3 120.1
C2 CM2 HM23 HM22 243.7 240.0
HM21 CM2 HM23 HM22 116.4 119.9
N9 C4 N3 C5 178.5 179.2