PDB Chemical Component 2M5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2M5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.455	1.428
C1	C2	1.523	1.531
C1	O5	1.449	1.429
O1	CAN	1.418	1.429
C2	O2	1.442	1.430
C2	C3	1.535	1.532
C3	O3	1.438	1.429
C3	C4	1.543	1.531
C4	O4	1.450	1.428
C4	C5	1.552	1.531
C5	O5	1.506	1.429
C5	C6	1.546	1.530
C6	O6	1.428	1.429
C6	CAI	1.537	1.530
C1	H1	1.101	1.090
C2	H2	1.100	1.090
O2	HO2	0.950	0.967
C3	H3	1.100	1.091
O3	HO3	0.950	0.966
C4	H4	1.099	1.090
O4	HO4	0.950	0.967
C5	H5	1.100	1.091
C6	H61	1.100	1.089
O6	HO6	0.950	0.967
CAI	HAI	1.100	1.089
CAI	HAIA	1.100	1.090
CAI	HAIB	1.100	1.090
CAN	HAN	1.100	1.091
CAN	HANA	1.100	1.090
CAN	HANB	1.100	1.090

Bond Angles for 2M5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	110.7	109.5
O1	C1	O5	107.6	109.5
C1	O1	CAN	105.6	114.0
O1	C1	H1	111.2	109.5
C2	C1	O5	113.1	109.4
C1	C2	O2	106.6	109.5
C1	C2	C3	111.5	109.2
C2	C1	H1	105.5	109.5
C1	C2	H2	110.0	109.5
C1	O5	C5	113.5	114.1
O5	C1	H1	108.7	109.5
O1	CAN	HAN	109.5	109.5
O1	CAN	HANA	109.5	109.4
O1	CAN	HANB	109.5	109.5
O2	C2	C3	109.2	109.5
O2	C2	H2	112.2	109.5
C2	O2	HO2	109.5	113.9
C2	C3	O3	108.3	109.5
C2	C3	C4	110.8	109.1
C3	C2	H2	107.3	109.6
C2	C3	H3	109.4	109.5
O3	C3	C4	109.6	109.6
O3	C3	H3	110.6	109.5
C3	O3	HO3	109.5	114.1
C3	C4	O4	110.7	109.5
C3	C4	C5	111.2	109.2
C4	C3	H3	108.1	109.6
C3	C4	H4	107.7	109.5
O4	C4	C5	110.4	109.5
O4	C4	H4	108.6	109.5
C4	O4	HO4	109.5	114.1
C4	C5	O5	110.9	109.4
C4	C5	C6	114.4	109.5
C5	C4	H4	108.1	109.5
C4	C5	H5	104.7	109.4
O5	C5	C6	108.4	109.5
O5	C5	H5	111.0	109.4
C5	C6	O6	108.4	109.4
C5	C6	CAI	112.2	109.5
C6	C5	H5	107.3	109.5
C5	C6	H61	109.0	109.5
O6	C6	CAI	111.3	109.5
O6	C6	H61	110.0	109.5
C6	O6	HO6	109.5	114.0
CAI	C6	H61	105.9	109.5
C6	CAI	HAI	109.5	109.5
C6	CAI	HAIA	109.5	109.4
C6	CAI	HAIB	109.5	109.5
HAI	CAI	HAIA	109.5	109.5
HAI	CAI	HAIB	109.5	109.5
HAIA	CAI	HAIB	109.5	109.5
HAN	CAN	HANA	109.5	109.5
HAN	CAN	HANB	109.5	109.5
HANA	CAN	HANB	109.5	109.5

Torsion Angles for 2M5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	O5	124.1	120.0
O1	C1	C2	O2	173.9	177.7
O1	C1	C2	C3	293.1	297.6
C2	C1	O1	H1	243.1	240.0
O1	C1	C2	H2	52.0	57.6
O1	C1	O5	C5	67.5	58.9
O5	C1	O1	H1	119.0	120.0
C1	O1	CAN	HAN	180.0	300.0
C1	O1	CAN	HANA	300.0	60.0
C1	O1	CAN	HANB	60.0	180.0
O1	C1	C2	O5	239.1	240.0
C2	C1	O1	CAN	195.0	190.0
O1	C1	C2	H1	120.4	120.0
C2	C1	O5	C5	304.9	298.9
O5	C1	C2	H1	241.3	240.0
O2	C2	C1	C3	240.9	240.2
O2	C2	C1	H2	121.9	120.1
C1	C2	O2	HO2	180.0	300.0
C1	C2	C3	O3	187.1	183.1
C1	C2	C3	C4	307.4	303.1
C3	C2	C1	H2	241.0	240.0
C1	C2	C3	H3	66.5	63.0
O1	C1	O5	C2	122.6	120.0
O5	C1	O1	CAN	70.9	70.0
O1	C1	O5	H1	239.4	240.0
O5	C1	C2	O2	294.8	297.7
O5	C1	C2	C3	54.0	57.6
C2	C1	O5	H1	116.8	120.0
O5	C1	C2	H2	172.9	177.6
C4	C5	O5	C1	54.4	61.1
C1	O5	C5	C6	180.8	181.1
C1	O5	C5	H5	298.4	301.2
CAN	O1	C1	C2	195.0	190.0
CAN	O1	C1	O5	70.9	70.0
CAN	O1	C1	H1	311.9	310.0
HAN	CAN	O1	HANA	240.0	240.0
HAN	CAN	O1	HANB	120.0	120.0
HANA	CAN	O1	HANB	240.0	240.0
O2	C2	C1	O5	294.8	297.7
C1	C2	O2	C3	120.6	119.7
O2	C2	C1	H1	53.5	57.7
C1	C2	O2	H2	239.6	239.9
O2	C2	C3	O3	304.7	303.0
O2	C2	C3	C4	64.9	62.9
C3	C2	O2	H2	118.9	120.2
O2	C2	C3	H3	184.0	182.9
C3	C2	C1	O5	54.0	57.6
C1	C2	C3	O2	242.4	240.1
C3	C2	C1	H1	172.7	177.6
C1	C2	C3	H2	120.5	120.0
O2	C2	C3	H2	238.1	239.9
C3	C2	O2	HO2	59.3	180.3
O3	C3	C2	C4	239.7	240.1
O3	C3	C2	H3	120.6	120.1
C2	C3	O3	HO3	180.0	300.0
C2	C3	C4	O4	176.0	176.9
C2	C3	C4	C5	52.9	56.9
C4	C3	C2	H3	240.9	240.0
C2	C3	C4	H4	294.6	297.0
C2	C3	O3	C4	121.0	119.6
O3	C3	C2	H2	66.6	63.1
C2	C3	O3	H3	240.1	239.9
O3	C3	C4	O4	295.4	296.8
O3	C3	C4	C5	172.4	176.8
C4	C3	O3	H3	119.1	120.3
O3	C3	C4	H4	54.1	56.9
C2	C3	C4	O3	240.5	240.1
C4	C3	C2	H2	186.8	183.1
C2	C3	C4	H3	119.9	119.9
O3	C3	C4	H3	239.4	239.8
C4	C3	O3	HO3	59.0	180.4
O4	C4	C3	C5	123.1	119.9
O4	C4	C3	H4	241.4	239.9
C3	C4	O4	HO4	180.0	60.0
C3	C4	C5	O5	307.0	302.5
C3	C4	C5	C6	184.0	182.4
C5	C4	C3	H4	118.3	119.9
C3	C4	C5	H5	66.8	62.4
C3	C4	O4	C5	236.5	240.3
O4	C4	C3	H3	56.1	57.0
C3	C4	O4	H4	118.1	120.1
O4	C4	C5	O5	183.7	182.5
O4	C4	C5	C6	60.7	62.4
C5	C4	O4	H4	241.6	239.9
O4	C4	C5	H5	303.6	302.4
C1	O5	C5	C4	54.4	61.1
C3	C4	C5	O4	123.3	120.0
C5	C4	C3	H3	293.0	297.1
C3	C4	C5	H4	241.9	240.1
O4	C4	C5	H4	118.6	120.1
C5	C4	O4	HO4	303.5	179.7
O5	C5	C4	C6	123.0	120.1
O5	C5	C4	H5	240.2	240.1
C4	C5	C6	O6	67.9	55.0
C4	C5	C6	CAI	191.2	175.0
C6	C5	C4	H5	117.2	120.0
C4	C5	C6	H61	308.2	295.0
C5	O5	C1	H1	188.1	178.9
C4	C5	O5	C6	233.6	239.9
O5	C5	C4	H4	65.1	62.4
C4	C5	O5	H5	116.0	119.9
O5	C5	C6	O6	303.5	295.0
O5	C5	C6	CAI	66.9	55.0
C6	C5	O5	H5	242.3	240.0
O5	C5	C6	H61	183.9	175.0
C4	C5	C6	O5	124.3	120.0
C6	C5	C4	H4	302.1	302.3
C4	C5	C6	H5	244.4	240.0
O5	C5	C6	H5	120.0	120.0
O6	C6	C5	CAI	236.7	240.0
O6	C6	C5	H61	119.7	120.0
C5	C6	O6	HO6	180.0	60.0
CAI	C6	C5	H61	243.0	240.0
C5	C6	CAI	HAI	180.0	60.1
C5	C6	CAI	HAIA	300.0	180.0
C5	C6	CAI	HAIB	60.0	300.0
C5	C6	O6	CAI	123.9	120.0
O6	C6	C5	H5	183.5	175.0
C5	C6	O6	H61	241.0	240.0
CAI	C6	O6	H61	117.1	120.0
O6	C6	CAI	HAI	301.7	180.0
O6	C6	CAI	HAIA	61.7	300.0
O6	C6	CAI	HAIB	181.7	60.0
C5	C6	CAI	O6	238.3	240.0
CAI	C6	C5	H5	306.9	295.0
C5	C6	CAI	H61	118.8	120.0
O6	C6	CAI	H61	240.5	240.0
CAI	C6	O6	HO6	56.1	300.0
HAI	CAI	C6	HAIA	240.0	240.0
HAI	CAI	C6	HAIB	120.0	120.1
HAIA	CAI	C6	HAIB	240.0	240.0
O1	C1	H1	C2	239.9	240.0
O1	C1	H1	O5	118.3	120.0
H1	C1	O1	CAN	311.9	310.0
C2	C1	H1	O5	238.4	240.0
H1	C1	C2	O2	53.5	57.7
H1	C1	C2	C3	172.7	177.6
H1	C1	C2	H2	291.6	297.6
H1	C1	O5	C5	188.1	178.9
H2	C2	C1	O5	172.9	177.6
C1	C2	H2	O2	118.5	120.1
C1	C2	H2	C3	238.5	240.2
H2	C2	C1	H1	291.6	297.6
O2	C2	H2	C3	120.0	120.1
H2	C2	O2	HO2	300.4	60.1
H2	C2	C3	O3	66.6	63.1
H2	C2	C3	C4	186.8	183.1
H2	C2	C3	H3	305.9	303.1
HO2	O2	C2	C3	59.3	180.3
HO2	O2	C2	H2	300.4	60.1
C2	C3	H3	O3	119.2	120.1
C2	C3	H3	C4	239.2	240.4
H3	C3	C2	H2	305.9	303.1
O3	C3	H3	C4	120.0	120.3
H3	C3	O3	HO3	299.9	60.1
H3	C3	C4	O4	56.1	57.0
H3	C3	C4	C5	293.0	297.1
H3	C3	C4	H4	174.7	177.1
HO3	O3	C3	C4	59.0	180.4
HO3	O3	C3	H3	299.9	60.1
C3	C4	H4	O4	240.0	239.8
C3	C4	H4	C5	120.3	119.7
H4	C4	C3	H3	174.7	177.1
O4	C4	H4	C5	240.2	239.9
H4	C4	O4	HO4	61.9	299.8
H4	C4	C5	O5	65.1	62.4
H4	C4	C5	C6	302.1	302.3
H4	C4	C5	H5	184.9	182.3
HO4	O4	C4	C5	303.5	179.7
HO4	O4	C4	H4	61.9	299.8
C4	C5	H5	O5	240.3	240.1
C4	C5	H5	C6	121.9	120.0
H5	C5	C4	H4	184.9	182.3
O5	C5	H5	C6	241.7	239.9
H5	C5	C6	O6	183.5	175.0
H5	C5	C6	CAI	306.9	295.0
H5	C5	C6	H61	63.9	55.0
C5	C6	H61	O6	118.7	120.0
C5	C6	H61	CAI	239.1	240.0
H61	C6	C5	H5	63.9	55.0
O6	C6	H61	CAI	120.4	120.0
H61	C6	O6	HO6	299.0	180.0
H61	C6	CAI	HAI	61.2	300.0
H61	C6	CAI	HAIA	181.2	60.0
H61	C6	CAI	HAIB	301.2	180.0
HO6	O6	C6	CAI	56.1	300.0
HO6	O6	C6	H61	299.0	180.0
HAI	CAI	C6	H61	61.2	300.0
C6	CAI	HAI	HAIA	120.0	119.9
C6	CAI	HAI	HAIB	240.0	240.0
HAIA	CAI	HAI	HAIB	120.0	120.0
HAIA	CAI	C6	H61	181.2	60.0
C6	CAI	HAIA	HAI	240.0	240.0
C6	CAI	HAIA	HAIB	120.0	120.0
HAI	CAI	HAIA	HAIB	240.0	239.9
HAIB	CAI	C6	H61	301.2	180.0
C6	CAI	HAIB	HAI	120.0	120.0
C6	CAI	HAIB	HAIA	240.0	240.0
HAI	CAI	HAIB	HAIA	120.0	120.0
O1	CAN	HAN	HANA	120.0	119.9
O1	CAN	HAN	HANB	240.0	240.0
HANA	CAN	HAN	HANB	120.0	120.0
O1	CAN	HANA	HAN	240.0	240.1
O1	CAN	HANA	HANB	120.0	120.0
HAN	CAN	HANA	HANB	240.0	240.0
O1	CAN	HANB	HAN	120.0	120.0
O1	CAN	HANB	HANA	240.0	240.0
HAN	CAN	HANB	HANA	120.0	120.0