PDB Chemical Component 2LM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2LM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O1 |
1.241 |
1.214 |
| C |
CA |
1.478 |
1.482 |
| C |
O2 |
1.255 |
1.346 |
| N |
CA |
1.364 |
1.281 |
| N |
C4A |
1.297 |
1.465 |
| P |
OP1 |
1.514 |
1.479 |
| P |
OP2 |
1.463 |
1.610 |
| P |
OP3 |
1.523 |
1.610 |
| P |
OP4 |
1.630 |
1.611 |
| N1 |
C2 |
1.357 |
1.319 |
| N1 |
C6 |
1.355 |
1.319 |
| C2 |
C3 |
1.395 |
1.388 |
| C2 |
C2A |
1.537 |
1.506 |
| C3 |
O3 |
1.363 |
1.359 |
| C3 |
C4 |
1.423 |
1.392 |
| C4 |
C5 |
1.395 |
1.385 |
| C4 |
C4A |
1.504 |
1.507 |
| C5 |
C6 |
1.401 |
1.382 |
| C5 |
C5A |
1.522 |
1.507 |
| CA |
CB |
1.553 |
1.507 |
| CB |
CG |
1.553 |
1.529 |
| SD |
CE |
1.775 |
1.814 |
| SD |
CG |
1.806 |
1.814 |
| C5A |
OP4 |
1.447 |
1.428 |
| O3 |
HO3 |
0.950 |
0.967 |
| C6 |
H6 |
1.080 |
1.080 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CE |
HE |
1.100 |
1.090 |
| CE |
HEA |
1.100 |
1.090 |
| CE |
HEB |
1.100 |
1.090 |
| CG |
HG |
1.099 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| C2A |
H2A |
1.100 |
1.091 |
| C2A |
H2A1 |
1.100 |
1.090 |
| C2A |
H2A2 |
1.100 |
1.090 |
| C4A |
H4A |
1.100 |
1.090 |
| C5A |
H5A |
1.100 |
1.091 |
| C5A |
H5A1 |
1.100 |
1.090 |
| OP2 |
HOP2 |
0.950 |
0.968 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| C4A |
H4A1 |
1.100 |
1.089 |
| O2 |
H2 |
0.950 |
0.967 |
Bond Angles for 2LM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C |
CA |
122.3 |
120.0 |
| O1 |
C |
O2 |
118.9 |
120.0 |
| CA |
C |
O2 |
118.8 |
120.1 |
| C |
CA |
N |
114.2 |
120.0 |
| C |
CA |
CB |
122.7 |
120.1 |
| C |
O2 |
H2 |
109.5 |
117.1 |
| CA |
N |
C4A |
130.4 |
120.0 |
| N |
CA |
CB |
123.0 |
119.9 |
| N |
C4A |
C4 |
121.5 |
109.4 |
| N |
C4A |
H4A |
105.6 |
109.5 |
| N |
C4A |
H4A1 |
105.6 |
109.5 |
| OP1 |
P |
OP2 |
115.6 |
109.5 |
| OP1 |
P |
OP3 |
117.2 |
109.5 |
| OP1 |
P |
OP4 |
101.5 |
109.5 |
| OP2 |
P |
OP3 |
112.3 |
109.5 |
| OP2 |
P |
OP4 |
104.1 |
109.5 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| OP3 |
P |
OP4 |
103.7 |
109.5 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| P |
OP4 |
C5A |
119.3 |
123.0 |
| C2 |
N1 |
C6 |
121.5 |
121.8 |
| N1 |
C2 |
C3 |
119.2 |
120.7 |
| N1 |
C2 |
C2A |
119.0 |
119.7 |
| N1 |
C6 |
C5 |
120.9 |
120.9 |
| N1 |
C6 |
H6 |
119.6 |
119.5 |
| C3 |
C2 |
C2A |
121.8 |
119.7 |
| C2 |
C3 |
O3 |
119.5 |
120.5 |
| C2 |
C3 |
C4 |
121.1 |
119.0 |
| C2 |
C2A |
H2A |
109.5 |
109.4 |
| C2 |
C2A |
H2A1 |
109.5 |
109.5 |
| C2 |
C2A |
H2A2 |
109.4 |
109.5 |
| O3 |
C3 |
C4 |
119.4 |
120.5 |
| C3 |
O3 |
HO3 |
109.5 |
114.0 |
| C3 |
C4 |
C5 |
117.3 |
118.4 |
| C3 |
C4 |
C4A |
122.1 |
120.8 |
| C5 |
C4 |
C4A |
120.4 |
120.8 |
| C4 |
C5 |
C6 |
119.9 |
119.3 |
| C4 |
C5 |
C5A |
121.7 |
120.4 |
| C4 |
C4A |
H4A |
105.7 |
109.5 |
| C4 |
C4A |
H4A1 |
105.6 |
109.5 |
| C6 |
C5 |
C5A |
118.4 |
120.3 |
| C5 |
C6 |
H6 |
119.5 |
119.6 |
| C5 |
C5A |
OP4 |
109.7 |
109.5 |
| C5 |
C5A |
H5A |
109.4 |
109.5 |
| C5 |
C5A |
H5A1 |
109.4 |
109.4 |
| CA |
CB |
CG |
113.6 |
109.5 |
| CA |
CB |
HB |
108.1 |
109.5 |
| CA |
CB |
HBA |
108.1 |
109.5 |
| CB |
CG |
SD |
118.9 |
109.5 |
| CG |
CB |
HB |
108.1 |
109.5 |
| CG |
CB |
HBA |
108.1 |
109.5 |
| CB |
CG |
HG |
106.4 |
109.5 |
| CB |
CG |
HGA |
106.5 |
109.5 |
| CE |
SD |
CG |
117.8 |
103.0 |
| SD |
CE |
HE |
109.5 |
109.5 |
| SD |
CE |
HEA |
109.5 |
109.5 |
| SD |
CE |
HEB |
109.5 |
109.4 |
| SD |
CG |
HG |
106.5 |
109.5 |
| SD |
CG |
HGA |
106.4 |
109.4 |
| OP4 |
C5A |
H5A |
109.4 |
109.5 |
| OP4 |
C5A |
H5A1 |
109.4 |
109.5 |
| HB |
CB |
HBA |
110.8 |
109.4 |
| HE |
CE |
HEA |
109.4 |
109.5 |
| HE |
CE |
HEB |
109.5 |
109.5 |
| HEA |
CE |
HEB |
109.5 |
109.4 |
| HG |
CG |
HGA |
112.3 |
109.4 |
| H2A |
C2A |
H2A1 |
109.4 |
109.4 |
| H2A |
C2A |
H2A2 |
109.5 |
109.5 |
| H2A1 |
C2A |
H2A2 |
109.5 |
109.5 |
| H4A |
C4A |
H4A1 |
113.0 |
109.5 |
| H5A |
C5A |
H5A1 |
109.6 |
109.4 |
Torsion Angles for 2LM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O1 |
O2 |
177.2 |
180.3 |
| O1 |
C |
CA |
N |
149.2 |
180.0 |
| O1 |
C |
CA |
CB |
325.8 |
0.0 |
| O1 |
C |
O2 |
H2 |
360.0 |
0.1 |
| O1 |
C |
CA |
O2 |
182.8 |
179.7 |
| CA |
C |
O2 |
H2 |
182.7 |
179.8 |
| C |
CA |
N |
C4A |
179.1 |
184.1 |
| N |
CA |
C |
CB |
183.3 |
180.0 |
| C |
CA |
CB |
CG |
340.1 |
263.7 |
| C |
CA |
CB |
HB |
100.1 |
23.7 |
| C |
CA |
CB |
HBA |
220.1 |
143.7 |
| O1 |
C |
O2 |
CA |
177.3 |
180.3 |
| O2 |
C |
CA |
N |
326.4 |
0.2 |
| O2 |
C |
CA |
CB |
143.0 |
180.3 |
| N |
CA |
C |
O2 |
326.4 |
0.2 |
| C |
CA |
N |
CB |
176.6 |
180.0 |
| CA |
N |
C4A |
C4 |
182.8 |
117.5 |
| CA |
N |
C4A |
H4A |
302.9 |
237.5 |
| CA |
N |
C4A |
H4A1 |
62.9 |
357.5 |
| N |
CA |
CB |
CG |
156.4 |
83.7 |
| N |
CA |
CB |
HB |
276.4 |
203.7 |
| N |
CA |
CB |
HBA |
36.5 |
323.7 |
| C4A |
N |
CA |
CB |
2.4 |
4.1 |
| C3 |
C4 |
C4A |
N |
349.3 |
84.0 |
| C5 |
C4 |
C4A |
N |
163.8 |
263.9 |
| C4 |
C4A |
N |
H4A |
240.0 |
240.0 |
| C4 |
C4A |
N |
H4A1 |
120.0 |
120.0 |
| H4A |
C4A |
N |
H4A1 |
240.0 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
224.0 |
240.0 |
| OP2 |
P |
OP1 |
OP4 |
112.0 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
360.0 |
180.0 |
| OP3 |
P |
OP1 |
OP4 |
248.0 |
240.0 |
| OP1 |
P |
OP3 |
HOP3 |
0.0 |
300.0 |
| OP1 |
P |
OP4 |
C5A |
181.5 |
55.0 |
| OP1 |
P |
OP2 |
OP3 |
138.1 |
120.0 |
| OP1 |
P |
OP2 |
OP4 |
249.6 |
240.0 |
| OP3 |
P |
OP2 |
OP4 |
111.5 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
137.4 |
60.0 |
| OP2 |
P |
OP4 |
C5A |
61.0 |
295.0 |
| OP1 |
P |
OP3 |
OP2 |
222.6 |
240.0 |
| OP1 |
P |
OP3 |
OP4 |
110.8 |
120.0 |
| OP2 |
P |
OP3 |
OP4 |
248.2 |
240.0 |
| OP3 |
P |
OP2 |
HOP2 |
221.9 |
60.0 |
| OP3 |
P |
OP4 |
C5A |
303.4 |
175.0 |
| OP1 |
P |
OP4 |
OP2 |
120.4 |
120.0 |
| OP1 |
P |
OP4 |
OP3 |
238.0 |
240.0 |
| OP2 |
P |
OP4 |
OP3 |
117.6 |
120.0 |
| OP4 |
P |
OP2 |
HOP2 |
110.4 |
300.0 |
| OP4 |
P |
OP3 |
HOP3 |
249.2 |
180.0 |
| C5 |
C5A |
OP4 |
P |
202.4 |
180.0 |
| P |
OP4 |
C5A |
H5A |
82.4 |
60.0 |
| P |
OP4 |
C5A |
H5A1 |
322.4 |
300.0 |
| C2 |
N1 |
C6 |
C5 |
359.3 |
0.1 |
| C2 |
N1 |
C6 |
H6 |
179.3 |
179.9 |
| C3 |
C2 |
N1 |
C2A |
180.2 |
180.1 |
| N1 |
C2 |
C3 |
O3 |
180.1 |
180.0 |
| N1 |
C2 |
C3 |
C4 |
359.2 |
360.0 |
| N1 |
C2 |
C2A |
H2A |
0.0 |
90.1 |
| N1 |
C2 |
C2A |
H2A1 |
120.0 |
210.0 |
| N1 |
C2 |
C2A |
H2A2 |
240.0 |
330.0 |
| C6 |
N1 |
C2 |
C3 |
359.8 |
360.0 |
| C6 |
N1 |
C2 |
C2A |
179.6 |
179.9 |
| C4 |
C5 |
C6 |
N1 |
2.6 |
359.9 |
| N1 |
C6 |
C5 |
C5A |
179.9 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.1 |
| C3 |
C2 |
N1 |
C6 |
359.8 |
360.0 |
| N1 |
C2 |
C3 |
C2A |
179.8 |
179.9 |
| C3 |
C2 |
C2A |
H2A |
179.8 |
270.0 |
| C3 |
C2 |
C2A |
H2A1 |
299.8 |
29.9 |
| C3 |
C2 |
C2A |
H2A2 |
59.8 |
150.0 |
| O3 |
C3 |
C2 |
C4 |
181.0 |
180.0 |
| C2 |
C3 |
O3 |
HO3 |
180.0 |
90.0 |
| C2 |
C3 |
C4 |
C5 |
2.7 |
0.0 |
| C2 |
C3 |
C4 |
C4A |
177.3 |
180.0 |
| C2A |
C2 |
N1 |
C6 |
179.6 |
179.9 |
| N1 |
C2 |
C2A |
C3 |
180.2 |
180.1 |
| C2A |
C2 |
C3 |
O3 |
0.3 |
0.1 |
| C2A |
C2 |
C3 |
C4 |
179.4 |
180.0 |
| H2A |
C2A |
C2 |
H2A1 |
240.0 |
240.1 |
| H2A |
C2A |
C2 |
H2A2 |
120.0 |
120.0 |
| H2A1 |
C2A |
C2 |
H2A2 |
240.0 |
240.0 |
| O3 |
C3 |
C2 |
C2A |
0.3 |
0.1 |
| C2 |
C3 |
O3 |
C4 |
179.1 |
180.0 |
| O3 |
C3 |
C4 |
C5 |
181.7 |
180.0 |
| O3 |
C3 |
C4 |
C4A |
356.4 |
359.9 |
| N |
C4A |
C4 |
C3 |
349.3 |
84.0 |
| C4 |
C3 |
C2 |
C2A |
179.4 |
180.0 |
| C2 |
C3 |
C4 |
O3 |
181.0 |
180.0 |
| C4 |
C3 |
O3 |
HO3 |
1.0 |
270.0 |
| C5 |
C4 |
C3 |
C4A |
185.3 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
356.5 |
0.0 |
| C3 |
C4 |
C5 |
C5A |
179.4 |
179.9 |
| C3 |
C4 |
C4A |
H4A |
229.3 |
324.0 |
| C3 |
C4 |
C4A |
H4A1 |
109.3 |
204.0 |
| N |
C4A |
C4 |
C5 |
163.8 |
263.9 |
| N1 |
C6 |
C5 |
C4 |
2.6 |
359.9 |
| C3 |
C4 |
C5 |
C4A |
174.8 |
179.9 |
| C5 |
C4 |
C4A |
H4A |
43.8 |
143.9 |
| C5 |
C4 |
C4A |
H4A1 |
283.8 |
23.9 |
| C6 |
C5 |
C4 |
C5A |
177.2 |
180.1 |
| C4 |
C5 |
C6 |
H6 |
182.6 |
180.0 |
| C4 |
C5 |
C5A |
OP4 |
84.8 |
185.9 |
| C4 |
C5 |
C5A |
H5A |
204.8 |
305.9 |
| C4 |
C5 |
C5A |
H5A1 |
324.8 |
65.8 |
| N |
C4A |
C4 |
H4A |
120.0 |
120.0 |
| N |
C4A |
C4 |
H4A1 |
240.0 |
240.0 |
| C3 |
C4 |
C4A |
C5 |
185.5 |
180.1 |
| C4A |
C4 |
C5 |
C6 |
181.8 |
180.1 |
| C4A |
C4 |
C5 |
C5A |
4.6 |
360.0 |
| H4A |
C4A |
C4 |
H4A1 |
120.0 |
120.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
C4A |
181.8 |
180.1 |
| C4 |
C5 |
C6 |
C5A |
182.7 |
179.9 |
| C6 |
C5 |
C5A |
OP4 |
267.6 |
5.8 |
| C6 |
C5 |
C5A |
H5A |
27.6 |
125.8 |
| C6 |
C5 |
C5A |
H5A1 |
147.6 |
245.7 |
| P |
OP4 |
C5A |
C5 |
202.4 |
180.0 |
| C5A |
C5 |
C4 |
C4A |
4.6 |
360.0 |
| C4 |
C5 |
C5A |
C6 |
177.2 |
180.1 |
| C5A |
C5 |
C6 |
H6 |
359.9 |
0.2 |
| OP4 |
C5A |
C5 |
H5A |
240.0 |
240.0 |
| OP4 |
C5A |
C5 |
H5A1 |
120.0 |
120.0 |
| H5A |
C5A |
C5 |
H5A1 |
240.0 |
240.1 |
| CB |
CA |
C |
O2 |
143.0 |
180.3 |
| C |
CA |
CB |
N |
183.6 |
180.0 |
| CB |
CA |
N |
C4A |
2.4 |
4.1 |
| CA |
CB |
CG |
SD |
244.1 |
180.0 |
| CG |
CB |
CA |
HB |
240.0 |
240.0 |
| CG |
CB |
CA |
HBA |
120.0 |
120.0 |
| CA |
CB |
CG |
HG |
4.1 |
300.0 |
| CA |
CB |
CG |
HGA |
124.1 |
60.0 |
| HB |
CB |
CA |
HBA |
240.0 |
240.0 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
240.0 |
240.0 |
| CE |
SD |
CG |
CB |
100.0 |
180.0 |
| SD |
CG |
CB |
HG |
240.0 |
240.0 |
| SD |
CG |
CB |
HGA |
120.0 |
120.0 |
| HB |
CB |
CG |
HBA |
120.0 |
120.0 |
| HG |
CG |
CB |
HGA |
240.0 |
240.0 |
| CB |
CG |
SD |
CE |
100.0 |
180.0 |
| CE |
SD |
CG |
HG |
340.0 |
59.9 |
| CE |
SD |
CG |
HGA |
220.0 |
300.0 |
| HE |
CE |
SD |
HEA |
240.0 |
240.0 |
| HE |
CE |
SD |
HEB |
120.0 |
120.0 |
| HEA |
CE |
SD |
HEB |
240.0 |
240.1 |
| SD |
CG |
CB |
HB |
124.1 |
60.0 |
| SD |
CG |
CB |
HBA |
4.1 |
300.0 |
| CB |
CG |
SD |
HG |
120.0 |
120.1 |
| CB |
CG |
SD |
HGA |
240.0 |
240.0 |
| CG |
SD |
CE |
HE |
180.0 |
180.0 |
| CG |
SD |
CE |
HEA |
300.0 |
300.1 |
| CG |
SD |
CE |
HEB |
60.0 |
60.0 |
| HG |
CG |
SD |
HGA |
120.0 |
120.0 |
| C5 |
C5A |
OP4 |
H5A |
120.0 |
120.0 |
| C5 |
C5A |
OP4 |
H5A1 |
240.0 |
240.0 |
| H5A |
C5A |
OP4 |
H5A1 |
120.0 |
120.0 |
| HO3 |
O3 |
C3 |
C4 |
1.0 |
270.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
C5A |
359.9 |
0.2 |
| CA |
CB |
HB |
CG |
236.7 |
240.0 |
| CA |
CB |
HB |
HBA |
118.3 |
120.0 |
| HB |
CB |
CG |
SD |
124.1 |
60.0 |
| CG |
CB |
HB |
HBA |
241.7 |
240.0 |
| HB |
CB |
CG |
HG |
244.1 |
180.0 |
| HB |
CB |
CG |
HGA |
4.1 |
300.0 |
| CA |
CB |
HBA |
CG |
123.3 |
120.0 |
| CA |
CB |
HBA |
HB |
241.7 |
240.0 |
| HBA |
CB |
CG |
SD |
4.1 |
300.0 |
| CG |
CB |
HBA |
HB |
118.3 |
120.0 |
| HBA |
CB |
CG |
HG |
124.1 |
60.0 |
| HBA |
CB |
CG |
HGA |
244.1 |
180.0 |
| HE |
CE |
SD |
CG |
180.0 |
180.0 |
| SD |
CE |
HE |
HEA |
120.0 |
120.0 |
| SD |
CE |
HE |
HEB |
240.0 |
240.0 |
| HEA |
CE |
HE |
HEB |
120.0 |
120.0 |
| HEA |
CE |
SD |
CG |
300.0 |
300.1 |
| SD |
CE |
HEA |
HE |
240.0 |
240.0 |
| SD |
CE |
HEA |
HEB |
120.0 |
119.9 |
| HE |
CE |
HEA |
HEB |
240.0 |
239.9 |
| HEB |
CE |
SD |
CG |
60.0 |
60.0 |
| SD |
CE |
HEB |
HE |
120.0 |
120.0 |
| SD |
CE |
HEB |
HEA |
240.0 |
240.1 |
| HE |
CE |
HEB |
HEA |
120.0 |
120.1 |
| CB |
CG |
HG |
SD |
232.3 |
240.0 |
| HG |
CG |
CB |
HB |
244.1 |
180.0 |
| HG |
CG |
CB |
HBA |
124.1 |
60.0 |
| CB |
CG |
HG |
HGA |
116.1 |
120.0 |
| SD |
CG |
HG |
HGA |
243.9 |
240.0 |
| CB |
CG |
HGA |
SD |
127.7 |
120.0 |
| HGA |
CG |
CB |
HB |
4.1 |
300.0 |
| HGA |
CG |
CB |
HBA |
244.1 |
180.0 |
| CB |
CG |
HGA |
HG |
243.9 |
240.0 |
| SD |
CG |
HGA |
HG |
116.1 |
120.0 |
| C2 |
C2A |
H2A |
H2A1 |
120.0 |
119.9 |
| C2 |
C2A |
H2A |
H2A2 |
240.0 |
239.9 |
| H2A1 |
C2A |
H2A |
H2A2 |
120.0 |
120.0 |
| C2 |
C2A |
H2A1 |
H2A |
240.0 |
240.1 |
| C2 |
C2A |
H2A1 |
H2A2 |
120.0 |
120.1 |
| H2A |
C2A |
H2A1 |
H2A2 |
240.0 |
240.0 |
| C2 |
C2A |
H2A2 |
H2A |
120.0 |
120.0 |
| C2 |
C2A |
H2A2 |
H2A1 |
240.0 |
240.0 |
| H2A |
C2A |
H2A2 |
H2A1 |
119.9 |
120.0 |
| N |
C4A |
H4A |
C4 |
230.0 |
240.0 |
| N |
C4A |
H4A |
H4A1 |
115.0 |
120.0 |
| C4 |
C4A |
H4A |
H4A1 |
245.0 |
240.0 |
| C5 |
C5A |
H5A |
OP4 |
239.8 |
240.0 |
| C5 |
C5A |
H5A |
H5A1 |
119.9 |
119.9 |
| OP4 |
C5A |
H5A |
H5A1 |
240.1 |
240.0 |
| C5 |
C5A |
H5A1 |
OP4 |
120.2 |
120.0 |
| C5 |
C5A |
H5A1 |
H5A |
240.1 |
240.0 |
| OP4 |
C5A |
H5A1 |
H5A |
119.9 |
120.0 |
| HOP2 |
OP2 |
P |
OP3 |
221.9 |
60.0 |
| HOP2 |
OP2 |
P |
OP4 |
110.4 |
300.0 |
| HOP3 |
OP3 |
P |
OP4 |
249.2 |
180.0 |
| N |
C4A |
H4A1 |
C4 |
129.9 |
120.0 |
| N |
C4A |
H4A1 |
H4A |
245.0 |
240.0 |
| C4 |
C4A |
H4A1 |
H4A |
115.0 |
120.0 |