PDB Chemical Component 2LJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2LJ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O5' |
C5' |
1.422 |
1.429 |
C5' |
C4' |
1.533 |
1.530 |
O4' |
C4' |
1.428 |
1.430 |
C4' |
C3' |
1.531 |
1.530 |
O2' |
C2' |
1.429 |
1.430 |
C3' |
C2' |
1.531 |
1.529 |
C3' |
O3' |
1.424 |
1.429 |
C2' |
C1' |
1.528 |
1.530 |
C1' |
N8 |
1.455 |
1.465 |
N8 |
C8A |
1.333 |
1.370 |
C8A |
N1 |
1.363 |
1.372 |
C8A |
C4A |
1.426 |
1.392 |
N1 |
C2 |
1.372 |
1.345 |
N5 |
C4A |
1.395 |
1.370 |
N5 |
C6 |
1.285 |
1.291 |
C4A |
C4 |
1.484 |
1.417 |
C8 |
C7 |
1.504 |
1.530 |
C2 |
O2 |
1.227 |
1.216 |
C2 |
N3 |
1.372 |
1.345 |
C7 |
C6 |
1.466 |
1.508 |
N3 |
C4 |
1.385 |
1.347 |
C4 |
O4 |
1.231 |
1.219 |
C6 |
H1 |
1.080 |
1.079 |
C7 |
H2 |
1.100 |
1.091 |
C7 |
H3 |
1.100 |
1.090 |
C8 |
H4 |
1.100 |
1.090 |
C8 |
H5 |
1.100 |
1.091 |
C8 |
H6 |
1.100 |
1.089 |
N3 |
H7 |
1.000 |
0.970 |
N8 |
H9 |
1.000 |
0.970 |
C1' |
H10 |
1.100 |
1.090 |
C1' |
H11 |
1.100 |
1.090 |
C2' |
H12 |
1.100 |
1.090 |
O2' |
H13 |
0.950 |
0.967 |
C3' |
H14 |
1.100 |
1.090 |
O3' |
H15 |
0.951 |
0.967 |
C4' |
H16 |
1.099 |
1.090 |
O4' |
H17 |
0.950 |
0.967 |
C5' |
H18 |
1.100 |
1.091 |
C5' |
H19 |
1.100 |
1.090 |
O5' |
H20 |
0.950 |
0.966 |
N1 |
H8 |
1.000 |
0.970 |
Bond Angles for 2LJ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O5' |
C5' |
H18 |
109.0 |
109.5 |
O5' |
C5' |
H19 |
109.0 |
109.5 |
C5' |
C4' |
H16 |
107.4 |
109.5 |
O4' |
C4' |
H16 |
108.7 |
109.5 |
C4' |
C3' |
H14 |
106.6 |
109.4 |
O2' |
C2' |
H12 |
108.5 |
109.4 |
C3' |
C2' |
H12 |
107.2 |
109.5 |
O3' |
C3' |
H14 |
107.9 |
109.4 |
C3' |
O3' |
H15 |
109.5 |
113.9 |
C2' |
C1' |
H10 |
107.8 |
109.5 |
C2' |
C1' |
H11 |
107.8 |
109.5 |
C1' |
N8 |
H9 |
104.3 |
120.0 |
C8A |
N1 |
H8 |
118.4 |
119.7 |
N1 |
C2 |
O2 |
121.6 |
119.2 |
N1 |
C2 |
N3 |
116.6 |
121.5 |
C2 |
N1 |
H8 |
118.4 |
119.8 |
N5 |
C6 |
H1 |
119.2 |
120.1 |
C4A |
C4 |
O4 |
126.4 |
120.3 |
C8 |
C7 |
H2 |
107.1 |
109.5 |
C8 |
C7 |
H3 |
107.1 |
109.5 |
C2 |
N3 |
H7 |
116.4 |
119.6 |
C7 |
C6 |
H1 |
119.3 |
120.0 |
N3 |
C4 |
O4 |
119.4 |
120.3 |
H2 |
C7 |
H3 |
109.5 |
109.4 |
H4 |
C8 |
H5 |
109.5 |
109.5 |
H4 |
C8 |
H6 |
109.5 |
109.5 |
H5 |
C8 |
H6 |
109.5 |
109.5 |
H10 |
C1' |
H11 |
109.5 |
109.5 |
H18 |
C5' |
H19 |
109.4 |
109.4 |
Torsion Angles for 2LJ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O5' |
C5' |
C4' |
H16 |
297.6 |
305.0 |
H18 |
C5' |
O5' |
H19 |
240.6 |
120.0 |
O4' |
C4' |
C5' |
H16 |
117.7 |
120.0 |
C5' |
C4' |
C3' |
H14 |
190.4 |
300.0 |
C5' |
C4' |
O4' |
H16 |
243.1 |
240.0 |
O4' |
C4' |
C3' |
H14 |
313.3 |
60.0 |
C4' |
C3' |
C2' |
H12 |
311.2 |
300.0 |
O3' |
C3' |
C4' |
H14 |
116.5 |
119.9 |
C4' |
C3' |
O3' |
H15 |
180.0 |
60.0 |
C3' |
C2' |
O2' |
H12 |
242.7 |
240.0 |
O2' |
C2' |
C1' |
H10 |
170.7 |
180.0 |
O2' |
C2' |
C1' |
H11 |
288.8 |
60.0 |
O2' |
C2' |
C3' |
H12 |
118.0 |
120.0 |
C3' |
C2' |
C1' |
H10 |
46.6 |
60.0 |
C3' |
C2' |
C1' |
H11 |
164.7 |
300.0 |
C4' |
C3' |
O3' |
H14 |
244.4 |
240.1 |
O3' |
C3' |
C2' |
H12 |
76.1 |
60.1 |
C2' |
C1' |
N8 |
H9 |
223.0 |
360.0 |
H10 |
C1' |
C2' |
H11 |
241.9 |
120.0 |
N8 |
C8A |
N1 |
H8 |
354.1 |
0.1 |
C2 |
N1 |
C8A |
H8 |
180.0 |
179.9 |
C4A |
C8A |
N1 |
H8 |
179.7 |
180.3 |
C8A |
N1 |
C2 |
H8 |
180.0 |
180.1 |
N1 |
C2 |
N3 |
H7 |
179.6 |
180.1 |
C4A |
N5 |
C6 |
H1 |
360.0 |
354.9 |
N5 |
C4A |
C4 |
O4 |
2.9 |
0.1 |
C7 |
C6 |
N5 |
H1 |
180.0 |
180.0 |
N3 |
C4 |
C4A |
O4 |
181.0 |
179.7 |
C8 |
C7 |
C6 |
H1 |
142.3 |
305.0 |
H2 |
C7 |
C8 |
H3 |
242.6 |
120.0 |
N1 |
C2 |
O2 |
N3 |
177.9 |
179.8 |
O2 |
C2 |
N1 |
H8 |
2.4 |
359.9 |
O2 |
C2 |
N3 |
H7 |
357.5 |
359.9 |
N1 |
C2 |
N3 |
O2 |
182.0 |
180.2 |
N3 |
C2 |
N1 |
H8 |
180.4 |
179.7 |
N5 |
C6 |
C7 |
H1 |
180.0 |
180.0 |
C4A |
C4 |
N3 |
O4 |
179.0 |
180.3 |
C8 |
C7 |
H2 |
H3 |
115.8 |
239.9 |
H2 |
C7 |
C6 |
H1 |
21.0 |
65.0 |
C8 |
C7 |
H3 |
H2 |
244.2 |
120.0 |
H3 |
C7 |
C6 |
H1 |
263.6 |
184.9 |
H4 |
C8 |
C7 |
H2 |
301.3 |
300.1 |
H4 |
C8 |
C7 |
H3 |
58.7 |
180.1 |
H5 |
C8 |
H4 |
H6 |
120.0 |
120.0 |
H5 |
C8 |
C7 |
H2 |
61.3 |
60.0 |
H5 |
C8 |
C7 |
H3 |
178.7 |
300.0 |
H4 |
C8 |
H5 |
H6 |
240.0 |
239.9 |
H6 |
C8 |
C7 |
H2 |
181.3 |
180.0 |
H6 |
C8 |
C7 |
H3 |
298.7 |
60.0 |
H4 |
C8 |
H6 |
H5 |
120.0 |
120.0 |
H7 |
N3 |
C4 |
O4 |
1.3 |
359.9 |
C2' |
C1' |
H10 |
H11 |
117.1 |
240.0 |
H10 |
C1' |
N8 |
H9 |
102.1 |
120.0 |
C2' |
C1' |
H11 |
H10 |
242.9 |
120.0 |
H11 |
C1' |
N8 |
H9 |
343.9 |
240.0 |
H12 |
C2' |
C1' |
H10 |
288.9 |
299.9 |
H12 |
C2' |
C1' |
H11 |
47.0 |
179.9 |
H13 |
O2' |
C2' |
H12 |
297.2 |
180.0 |
H14 |
C3' |
C2' |
H12 |
193.1 |
180.0 |
H14 |
C3' |
O3' |
H15 |
295.6 |
179.9 |
H15 |
O3' |
C3' |
H14 |
295.6 |
179.9 |
H16 |
C4' |
C3' |
H14 |
70.9 |
180.0 |
H17 |
O4' |
C4' |
H16 |
296.9 |
180.0 |
O5' |
C5' |
H18 |
H19 |
119.2 |
240.0 |
H18 |
C5' |
C4' |
H16 |
177.3 |
65.0 |
O5' |
C5' |
H19 |
H18 |
240.8 |
120.0 |
H19 |
C5' |
C4' |
H16 |
57.9 |
185.0 |
H20 |
O5' |
C5' |
H18 |
300.3 |
60.0 |
H20 |
O5' |
C5' |
H19 |
59.7 |
300.0 |
H8 |
N1 |
C2 |
O2 |
2.4 |
359.9 |
H8 |
N1 |
C2 |
N3 |
180.4 |
179.7 |