PDB Chemical Component 2LJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2LJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5' C5' 1.422 1.429
C5' C4' 1.533 1.530
O4' C4' 1.428 1.430
C4' C3' 1.531 1.530
O2' C2' 1.429 1.430
C3' C2' 1.531 1.529
C3' O3' 1.424 1.429
C2' C1' 1.528 1.530
C1' N8 1.455 1.465
N8 C8A 1.333 1.370
C8A N1 1.363 1.372
C8A C4A 1.426 1.392
N1 C2 1.372 1.345
N5 C4A 1.395 1.370
N5 C6 1.285 1.291
C4A C4 1.484 1.417
C8 C7 1.504 1.530
C2 O2 1.227 1.216
C2 N3 1.372 1.345
C7 C6 1.466 1.508
N3 C4 1.385 1.347
C4 O4 1.231 1.219
C6 H1 1.080 1.079
C7 H2 1.100 1.091
C7 H3 1.100 1.090
C8 H4 1.100 1.090
C8 H5 1.100 1.091
C8 H6 1.100 1.089
N3 H7 1.000 0.970
N8 H9 1.000 0.970
C1' H10 1.100 1.090
C1' H11 1.100 1.090
C2' H12 1.100 1.090
O2' H13 0.950 0.967
C3' H14 1.100 1.090
O3' H15 0.951 0.967
C4' H16 1.099 1.090
O4' H17 0.950 0.967
C5' H18 1.100 1.091
C5' H19 1.100 1.090
O5' H20 0.950 0.966
N1 H8 1.000 0.970

Bond Angles for 2LJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O5' C5' H18 109.0 109.5
O5' C5' H19 109.0 109.5
C5' C4' H16 107.4 109.5
O4' C4' H16 108.7 109.5
C4' C3' H14 106.6 109.4
O2' C2' H12 108.5 109.4
C3' C2' H12 107.2 109.5
O3' C3' H14 107.9 109.4
C3' O3' H15 109.5 113.9
C2' C1' H10 107.8 109.5
C2' C1' H11 107.8 109.5
C1' N8 H9 104.3 120.0
C8A N1 H8 118.4 119.7
N1 C2 O2 121.6 119.2
N1 C2 N3 116.6 121.5
C2 N1 H8 118.4 119.8
N5 C6 H1 119.2 120.1
C4A C4 O4 126.4 120.3
C8 C7 H2 107.1 109.5
C8 C7 H3 107.1 109.5
C2 N3 H7 116.4 119.6
C7 C6 H1 119.3 120.0
N3 C4 O4 119.4 120.3
H2 C7 H3 109.5 109.4
H4 C8 H5 109.5 109.5
H4 C8 H6 109.5 109.5
H5 C8 H6 109.5 109.5
H10 C1' H11 109.5 109.5
H18 C5' H19 109.4 109.4

Torsion Angles for 2LJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5' C5' C4' H16 297.6 305.0
H18 C5' O5' H19 240.6 120.0
O4' C4' C5' H16 117.7 120.0
C5' C4' C3' H14 190.4 300.0
C5' C4' O4' H16 243.1 240.0
O4' C4' C3' H14 313.3 60.0
C4' C3' C2' H12 311.2 300.0
O3' C3' C4' H14 116.5 119.9
C4' C3' O3' H15 180.0 60.0
C3' C2' O2' H12 242.7 240.0
O2' C2' C1' H10 170.7 180.0
O2' C2' C1' H11 288.8 60.0
O2' C2' C3' H12 118.0 120.0
C3' C2' C1' H10 46.6 60.0
C3' C2' C1' H11 164.7 300.0
C4' C3' O3' H14 244.4 240.1
O3' C3' C2' H12 76.1 60.1
C2' C1' N8 H9 223.0 360.0
H10 C1' C2' H11 241.9 120.0
N8 C8A N1 H8 354.1 0.1
C2 N1 C8A H8 180.0 179.9
C4A C8A N1 H8 179.7 180.3
C8A N1 C2 H8 180.0 180.1
N1 C2 N3 H7 179.6 180.1
C4A N5 C6 H1 360.0 354.9
N5 C4A C4 O4 2.9 0.1
C7 C6 N5 H1 180.0 180.0
N3 C4 C4A O4 181.0 179.7
C8 C7 C6 H1 142.3 305.0
H2 C7 C8 H3 242.6 120.0
N1 C2 O2 N3 177.9 179.8
O2 C2 N1 H8 2.4 359.9
O2 C2 N3 H7 357.5 359.9
N1 C2 N3 O2 182.0 180.2
N3 C2 N1 H8 180.4 179.7
N5 C6 C7 H1 180.0 180.0
C4A C4 N3 O4 179.0 180.3
C8 C7 H2 H3 115.8 239.9
H2 C7 C6 H1 21.0 65.0
C8 C7 H3 H2 244.2 120.0
H3 C7 C6 H1 263.6 184.9
H4 C8 C7 H2 301.3 300.1
H4 C8 C7 H3 58.7 180.1
H5 C8 H4 H6 120.0 120.0
H5 C8 C7 H2 61.3 60.0
H5 C8 C7 H3 178.7 300.0
H4 C8 H5 H6 240.0 239.9
H6 C8 C7 H2 181.3 180.0
H6 C8 C7 H3 298.7 60.0
H4 C8 H6 H5 120.0 120.0
H7 N3 C4 O4 1.3 359.9
C2' C1' H10 H11 117.1 240.0
H10 C1' N8 H9 102.1 120.0
C2' C1' H11 H10 242.9 120.0
H11 C1' N8 H9 343.9 240.0
H12 C2' C1' H10 288.9 299.9
H12 C2' C1' H11 47.0 179.9
H13 O2' C2' H12 297.2 180.0
H14 C3' C2' H12 193.1 180.0
H14 C3' O3' H15 295.6 179.9
H15 O3' C3' H14 295.6 179.9
H16 C4' C3' H14 70.9 180.0
H17 O4' C4' H16 296.9 180.0
O5' C5' H18 H19 119.2 240.0
H18 C5' C4' H16 177.3 65.0
O5' C5' H19 H18 240.8 120.0
H19 C5' C4' H16 57.9 185.0
H20 O5' C5' H18 300.3 60.0
H20 O5' C5' H19 59.7 300.0
H8 N1 C2 O2 2.4 359.9
H8 N1 C2 N3 180.4 179.7