Atom Nomenclature for 2LI

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2LI

Atom Name (V3) Atom Name (V2)
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C10 C10
C13 C13
C15 C15
C20 C20
C22 C22
C26 C26
C28 C28
F34 F34
C29 C29
C30 C30
C31 C31
F33 F33
C32 C32
C27 C27
N21 N21
C23 C23
O25 O25
C19 C19
O24 O24
C18 C18
N17 N17
C35 C35
C3 C3
N37 N37
N36 N36
C2 C2
C1 C1
C9 C9
C11 C11
C12 C12
C16 C16
C14 C14
H5 H5
H5A H5A
H8 H8
H10 H10
H15 H15
H15A H15A
H15B H15B
H20 H20
H26 H26
H26A H26A
H28 H28
H30 H30
H32 H32
HN21 HN21
H23 H23
H23A H23A
H23B H23B
H19 H19
HO24 HO24
H18 H18
H18A H18A
HN17 HN17
H35 H35
H2 H2
H2A H2A
H1 H1
H1A H1A
H9 H9
H12 H12
H16 H16
H16A H16A
H16B H16B
H14 H14
H14A H14A
H14B H14B
HN37 HN37