PDB Chemical Component 2LF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2LF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| P |
OP2 |
1.477 |
1.610 |
| P |
O5' |
1.621 |
1.610 |
| N1 |
HN1 |
1.000 |
0.970 |
| N1 |
C2 |
1.341 |
1.360 |
| C2 |
N2 |
1.297 |
1.372 |
| N2 |
HN2A |
1.000 |
0.970 |
| N2 |
HN2 |
1.000 |
0.970 |
| N3 |
C2 |
1.320 |
1.321 |
| C4 |
N3 |
1.352 |
1.341 |
| C5 |
C4 |
1.375 |
1.413 |
| C5 |
C6 |
1.441 |
1.417 |
| C6 |
N1 |
1.375 |
1.358 |
| O6 |
C6 |
1.230 |
1.219 |
| N7 |
C5 |
1.414 |
1.345 |
| N7 |
C8 |
1.310 |
1.297 |
| C8 |
N9 |
1.357 |
1.378 |
| N9 |
C4 |
1.358 |
1.344 |
| N9 |
C1' |
1.463 |
1.474 |
| C1' |
H1' |
1.100 |
1.090 |
| C1' |
C2' |
1.512 |
1.552 |
| OP3 |
P |
1.479 |
1.610 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| C2' |
H'2' |
1.100 |
1.091 |
| C2' |
H2' |
1.100 |
1.090 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| C3' |
C2' |
1.537 |
1.545 |
| C3' |
H3' |
1.100 |
1.090 |
| C3' |
O3' |
1.416 |
1.429 |
| O3' |
HO3' |
0.951 |
0.967 |
| C4' |
C3' |
1.551 |
1.539 |
| O4' |
C1' |
1.419 |
1.452 |
| O4' |
C4' |
1.433 |
1.465 |
| C5' |
C8 |
1.536 |
1.511 |
| C5' |
C4' |
1.562 |
1.540 |
| O5' |
C5' |
1.425 |
1.429 |
| H4' |
C4' |
1.099 |
1.090 |
| H5' |
C5' |
1.100 |
1.090 |
| P |
OP1 |
1.430 |
1.481 |
Bond Angles for 2LF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
O5' |
110.1 |
109.5 |
| OP3 |
P |
OP2 |
119.7 |
109.5 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| OP2 |
P |
OP1 |
98.4 |
109.5 |
| OP3 |
P |
O5' |
108.6 |
109.5 |
| P |
O5' |
C5' |
120.5 |
123.0 |
| O5' |
P |
OP1 |
119.9 |
109.5 |
| C2 |
N1 |
HN1 |
118.1 |
119.2 |
| C6 |
N1 |
HN1 |
118.0 |
119.1 |
| N1 |
C2 |
N2 |
116.7 |
118.2 |
| C2 |
N2 |
HN2A |
120.0 |
120.0 |
| C2 |
N2 |
HN2 |
120.0 |
120.0 |
| HN2 |
N2 |
HN2A |
120.0 |
120.0 |
| N7 |
C8 |
N9 |
113.9 |
109.6 |
| C8 |
N9 |
C1' |
124.8 |
121.3 |
| N9 |
C1' |
H1' |
109.2 |
113.4 |
| N9 |
C1' |
C2' |
108.4 |
105.7 |
| C2' |
C1' |
H1' |
114.1 |
113.4 |
| O4' |
C1' |
H1' |
114.7 |
113.4 |
| C1' |
C2' |
H'2' |
111.1 |
110.6 |
| C1' |
C2' |
H2' |
111.1 |
110.6 |
| OP3 |
P |
OP1 |
100.3 |
109.5 |
| H2' |
C2' |
H'2' |
107.7 |
110.5 |
| C3' |
C2' |
H'2' |
111.1 |
110.5 |
| C3' |
C2' |
H2' |
111.2 |
110.7 |
| O3' |
C3' |
H3' |
106.9 |
110.4 |
| C4' |
C3' |
H3' |
111.2 |
110.5 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
Torsion Angles for 2LF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP3 |
P |
OP2 |
O5' |
126.8 |
120.0 |
| OP2 |
P |
O5' |
C5' |
176.1 |
185.0 |
| O5' |
P |
OP2 |
OP1 |
126.2 |
120.0 |
| OP3 |
P |
OP2 |
OP1 |
253.0 |
240.0 |
| OP3 |
P |
O5' |
OP2 |
227.2 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
126.2 |
180.0 |
| OP2 |
P |
O5' |
OP1 |
247.0 |
240.0 |
| OP3 |
P |
O5' |
OP1 |
114.3 |
120.0 |
| HN1 |
N1 |
C2 |
N2 |
0.8 |
360.0 |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
180.3 |
| N1 |
C2 |
N2 |
HN2A |
178.6 |
360.0 |
| N1 |
C2 |
N2 |
HN2 |
358.5 |
180.0 |
| N2 |
C2 |
N1 |
HN1 |
0.8 |
360.0 |
| HN2 |
N2 |
C2 |
HN2A |
180.0 |
180.0 |
| C2 |
N2 |
HN2A |
HN2 |
180.0 |
180.0 |
| C2 |
N2 |
HN2 |
HN2A |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
HN1 |
179.3 |
180.0 |
| N3 |
C2 |
N2 |
HN2A |
0.0 |
180.0 |
| N3 |
C2 |
N2 |
HN2 |
180.0 |
0.0 |
| C5 |
C6 |
N1 |
HN1 |
181.6 |
179.7 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
179.7 |
| O6 |
C6 |
N1 |
HN1 |
2.3 |
0.1 |
| N7 |
C8 |
N9 |
C1' |
178.5 |
179.0 |
| C8 |
N9 |
C1' |
H1' |
156.1 |
156.3 |
| C8 |
N9 |
C1' |
C2' |
281.0 |
281.1 |
| C2' |
C1' |
N9 |
H1' |
124.9 |
124.8 |
| O4' |
C1' |
N9 |
H1' |
234.8 |
235.2 |
| N9 |
C1' |
C2' |
H'2' |
200.1 |
324.3 |
| N9 |
C1' |
C2' |
H2' |
320.1 |
201.6 |
| N9 |
C1' |
H1' |
C2' |
121.4 |
120.6 |
| H1' |
C1' |
C2' |
H'2' |
322.0 |
89.1 |
| H1' |
C1' |
C2' |
H2' |
82.0 |
326.4 |
| N9 |
C1' |
C2' |
H1' |
238.1 |
235.2 |
| O4' |
C1' |
C2' |
H1' |
124.5 |
124.0 |
| H2' |
C2' |
C1' |
H'2' |
120.0 |
237.2 |
| C3' |
C2' |
C1' |
H'2' |
240.0 |
118.5 |
| C3' |
C2' |
C1' |
H2' |
120.0 |
241.3 |
| OP2 |
P |
OP3 |
O5' |
232.5 |
240.0 |
| OP3 |
P |
OP2 |
HOP2 |
253.0 |
300.0 |
| OP2 |
P |
OP3 |
OP1 |
105.9 |
120.0 |
| OP3 |
P |
O5' |
C5' |
43.3 |
65.0 |
| O5' |
P |
OP3 |
OP1 |
233.5 |
240.0 |
| HOP3 |
OP3 |
P |
OP2 |
106.0 |
300.0 |
| HOP3 |
OP3 |
P |
O5' |
233.5 |
60.0 |
| HOP3 |
OP3 |
P |
OP1 |
0.0 |
180.0 |
| H'2' |
C2' |
C1' |
H1' |
322.0 |
89.1 |
| C1' |
C2' |
H'2' |
H2' |
122.0 |
237.2 |
| C3' |
C2' |
H'2' |
H2' |
238.0 |
122.9 |
| H2' |
C2' |
C1' |
H1' |
82.0 |
326.4 |
| C1' |
C2' |
H2' |
H'2' |
238.0 |
122.8 |
| C3' |
C2' |
H2' |
H'2' |
122.0 |
237.2 |
| HOP2 |
OP2 |
P |
O5' |
126.2 |
180.0 |
| HOP2 |
OP2 |
P |
OP1 |
360.0 |
60.0 |
| C3' |
C2' |
C1' |
H1' |
202.0 |
207.7 |
| C1' |
C2' |
C3' |
H'2' |
120.0 |
241.4 |
| C1' |
C2' |
C3' |
H2' |
240.0 |
118.6 |
| H2' |
C2' |
C3' |
H'2' |
240.0 |
122.8 |
| H3' |
C3' |
C2' |
H'2' |
126.6 |
4.4 |
| H3' |
C3' |
C2' |
H2' |
6.6 |
127.2 |
| H3' |
C3' |
O3' |
HO3' |
54.3 |
299.1 |
| O3' |
C3' |
C2' |
H'2' |
7.1 |
242.1 |
| O3' |
C3' |
C2' |
H2' |
247.1 |
4.9 |
| C4' |
C3' |
O3' |
H3' |
237.4 |
237.5 |
| HO3' |
O3' |
C3' |
H3' |
54.3 |
299.1 |
| C4' |
C3' |
C2' |
H'2' |
248.2 |
123.2 |
| C4' |
C3' |
C2' |
H2' |
128.2 |
246.0 |
| O3' |
C3' |
C4' |
H3' |
120.1 |
122.4 |
| C4' |
C3' |
O3' |
HO3' |
291.7 |
176.6 |
| N9 |
C1' |
O4' |
H1' |
121.8 |
124.7 |
| C2' |
C1' |
O4' |
H1' |
235.9 |
236.0 |
| O4' |
C1' |
C2' |
H'2' |
86.5 |
213.2 |
| O4' |
C1' |
C2' |
H2' |
206.5 |
90.4 |
| C4' |
O4' |
C1' |
H1' |
171.9 |
166.0 |
| O4' |
C4' |
C3' |
H3' |
145.0 |
139.0 |
| P |
O5' |
C5' |
C8 |
146.9 |
120.0 |
| P |
O5' |
C5' |
C4' |
272.7 |
237.8 |
| C5' |
C4' |
C3' |
H3' |
29.3 |
22.6 |
| C5' |
O5' |
P |
OP1 |
289.0 |
305.0 |
| OP2 |
P |
OP1 |
O5' |
119.0 |
120.0 |
| OP3 |
P |
OP1 |
OP2 |
122.4 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
360.0 |
60.0 |
| OP3 |
P |
OP1 |
O5' |
241.4 |
240.0 |
| OP1 |
P |
O5' |
C5' |
289.0 |
305.0 |