PDB Chemical Component 2KH

Ideal Model

Chemical Description

Name 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
Formula C9 H16 N3 O14 P3
Formal charge 0
Molecular weight 483.156 g/mol
Component type NON-POLYMER

Chemical features

Atom count 45
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Bond count 46
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-N-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)O
InChI descriptor InChI=1S/C9H16N3O14P3/c13-5-1-2-12(9(16)10-5)8-7(15)6(14)4(25-8)3-24-27(17,18)11-28(19,20)26-29(21,22)23/h1-2,4,6-8,14-15H,3H2,(H,10,13,16)(H2,21,22,23)(H3,11,17,18,19,20)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor OZIBFYOFLVBDIY-XVFCMESISA-N

Status Information

Last modified 2013-12-13
Created 2013-11-19
Release status REL
Model PDB code 4NKT
Processing site RCSB