PDB Chemical Component 2KH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2KH

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O2'	C2'	1.404	1.430
O3'	C3'	1.417	1.429
C2'	C3'	1.451	1.548
C2'	C1'	1.470	1.550
O2	C2	1.290	1.216
C3'	C4'	1.442	1.540
C1'	N1	1.433	1.465
C1'	O4'	1.411	1.443
C2	N1	1.372	1.345
C2	N3	1.343	1.346
C4'	O4'	1.436	1.438
C4'	C5'	1.468	1.530
N1	C6	1.369	1.369
N3	C4	1.344	1.349
C5'	O5'	1.422	1.429
C6	C5	1.394	1.350
C4	C5	1.429	1.415
C4	O4	1.382	1.218
O2B	PB	1.489	1.480
O5'	PA	1.594	1.609
N3A	PB	1.648	1.683
N3A	PA	1.661	1.683
PB	O1B	1.583	1.610
PB	O3B	1.614	1.609
PA	O1A	1.593	1.480
PA	O2A	1.500	1.609
O3B	PG	1.575	1.611
PG	O2G	1.494	1.480
PG	O1G	1.434	1.610
PG	O3G	1.502	1.610
O2A	H1	0.950	0.968
N3A	H2	1.000	1.009
O1B	H3	0.950	0.967
O1G	H4	0.950	0.967
O3G	H5	0.950	0.968
C5'	H6	1.100	1.089
C5'	H7	1.100	1.090
C4'	H8	1.100	1.090
C1'	H9	1.100	1.091
C2'	H10	1.100	1.089
O2'	H11	0.950	0.967
C3'	H12	1.100	1.090
O3'	H13	0.950	0.967
C6	H14	1.080	1.081
N3	H15	1.000	0.970
C5	H16	1.080	1.080

Bond Angles for 2KH

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2'	C2'	C3'	109.4	110.9
O2'	C2'	H10	111.2	110.8
O3'	C3'	H12	110.2	110.5
C3'	C2'	H10	110.4	110.9
C2'	C3'	H12	109.7	110.4
C2'	C1'	N1	111.5	110.6
C2'	C1'	H9	109.0	110.7
O2	C2	N3	119.4	119.5
C3'	C4'	H8	110.2	110.1
C1'	N1	C6	120.9	119.7
N1	C1'	H9	109.6	110.5
C2	N3	C4	121.5	120.2
C2	N3	H15	119.2	119.9
O4'	C4'	H8	110.4	109.9
C4'	C5'	H6	107.7	109.5
C4'	C5'	H7	107.7	109.5
N1	C6	C5	120.5	119.7
N1	C6	H14	119.8	120.2
N3	C4	C5	119.6	119.4
N3	C4	O4	121.2	120.3
C4	N3	H15	119.3	119.9
C6	C5	C4	117.7	119.1
C5	C6	H14	119.7	120.1
C6	C5	H16	121.1	120.4
O4	C4	C5	119.2	120.3
C4	C5	H16	121.1	120.5
O2B	PB	O3B	104.6	109.5
N3A	PB	O1B	111.3	109.5
N3A	PB	O3B	116.0	109.5
PB	N3A	H2	108.0	111.0
O1B	PB	O3B	111.5	109.5
PB	O1B	H3	109.5	114.0
PB	O3B	PG	126.0	134.0
O1A	PA	O2A	109.1	109.5
PA	O2A	H1	109.5	114.0
O3B	PG	O2G	113.0	109.5
O3B	PG	O1G	107.4	109.5
O3B	PG	O3G	110.8	109.5
O1G	PG	O2G	109.1	109.5
O2G	PG	O3G	107.7	109.5
O1G	PG	O3G	108.7	109.5
PG	O1G	H4	109.5	114.0
PG	O3G	H5	109.5	114.0
H6	C5'	H7	109.4	109.5

Torsion Angles for 2KH

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3'	C2'	O2'	H10	237.7	236.3
O2'	C2'	C3'	H12	165.8	102.3
O2'	C2'	C1'	N1	210.2	273.7
O2'	C2'	C1'	H9	331.3	36.6
O3'	C3'	C2'	H10	279.1	216.0
C2'	C3'	O3'	H12	123.7	122.5
O3'	C3'	C4'	H8	317.9	358.8
O2'	C2'	C3'	H10	122.7	123.6
O3'	C3'	C2'	H12	236.0	237.4
C3'	C2'	C1'	N1	92.6	155.5
C3'	C2'	C1'	H9	213.6	278.4
C2'	C3'	C4'	H8	79.4	117.5
C2'	C1'	N1	C6	263.4	119.5
N1	C1'	C2'	H9	238.9	237.1
O2	C2	N3	C4	180.3	180.0
O2	C2	N3	H15	0.3	0.0
O4'	C4'	C3'	H8	241.4	240.5
C3'	C4'	C5'	H6	178.0	64.3
C3'	C4'	C5'	H7	295.9	304.2
C2'	C1'	N1	H9	120.8	123.0
C1'	N1	C6	C5	179.2	180.0
C1'	N1	C6	H14	359.2	360.0
C1'	O4'	C4'	H8	263.5	266.9
C2	N1	C1'	H9	321.7	176.2
C2	N1	C6	C5	0.2	0.3
C2	N1	C6	H14	180.2	180.2
C2	N3	C4	C5	359.7	0.2
C2	N3	C4	O4	179.3	180.0
C4	N3	C2	H15	180.0	180.0
C3'	C4'	O4'	H8	118.5	119.6
O4'	C4'	C5'	H6	62.4	306.4
O4'	C4'	C5'	H7	180.3	186.4
H6	C5'	C4'	H7	242.1	120.0
C6	N1	C1'	H9	142.7	356.5
N1	C6	C5	C4	359.9	360.0
C5	C6	N1	H14	180.0	180.0
N1	C6	C5	H16	179.9	180.0
C2	N3	C4	H15	180.0	180.0
C6	C5	C4	N3	0.2	359.8
O4	C4	N3	C5	179.7	179.8
N3	C4	C5	H16	180.2	179.7
N1	C6	C5	H14	180.0	180.0
N3	C4	C5	C6	0.2	359.8
O4	C4	C5	C6	180.5	180.0
C4	C5	C6	H16	180.0	179.9
N3	C4	C5	O4	179.7	179.8
C5	C4	N3	H15	179.7	180.2
C4	C5	C6	H14	179.9	180.0
C6	C5	C4	H16	180.0	180.1
N3	C4	O4	C5	180.3	180.2
O4	C4	N3	H15	359.3	0.0
C6	C5	C4	O4	180.5	180.0
O4	C4	C5	H16	0.5	359.9
N3A	PB	O2B	O3B	122.2	120.0
O2B	PB	N3A	H2	279.7	183.9
O1B	PB	O2B	O3B	240.9	240.0
O2B	PB	O1B	H3	360.0	180.1
O2B	PB	O3B	PG	216.8	300.0
O5'	PA	O2A	H1	243.6	60.0
O2B	PB	N3A	O3B	245.6	240.0
O1B	PB	N3A	O3B	128.9	120.0
N3A	PB	O1B	H3	114.1	300.0
N3A	PB	O3B	PG	102.7	180.0
N3A	PA	O2A	H1	120.8	300.0
O2B	PB	O1B	O3B	114.7	120.0
N3A	PB	O1B	O3B	228.8	240.0
O1B	PB	N3A	H2	162.9	64.0
O1B	PB	O3B	PG	333.9	60.0
N3A	PB	O3B	O1B	128.8	120.0
O3B	PB	N3A	H2	34.0	303.9
O3B	PB	O1B	H3	245.3	60.0
PB	O3B	PG	O2G	347.4	320.0
PB	O3B	PG	O1G	107.8	200.0
PB	O3B	PG	O3G	226.5	80.0
O1A	PA	O2A	H1	0.0	180.0
O1G	PG	O3B	O2G	120.4	240.0
O2G	PG	O3B	O3G	120.9	240.0
O1G	PG	O3B	O3G	241.4	120.0
O3B	PG	O1G	H4	237.1	180.0
O3B	PG	O3G	H5	124.0	60.0
O3B	PG	O2G	O1G	119.5	240.0
O3B	PG	O2G	O3G	237.3	120.0
O1G	PG	O2G	O3G	117.8	240.0
O2G	PG	O1G	H4	0.0	60.0
O2G	PG	O3G	H5	360.0	180.0
O3B	PG	O1G	O2G	237.1	120.0
O3B	PG	O1G	O3G	119.9	240.0
O2G	PG	O1G	O3G	242.8	120.0
O1G	PG	O3G	H5	241.9	300.0
O3B	PG	O3G	O2G	124.1	240.0
O3B	PG	O3G	O1G	242.2	120.0
O1G	PG	O3G	O2G	241.9	120.0
O3G	PG	O1G	H4	117.2	300.0
H2	N3A	PB	O1B	162.9	64.0
H2	N3A	PB	O3B	34.0	303.9
H3	O1B	PB	O3B	245.3	60.0
H4	O1G	PG	O2G	0.0	60.0
H4	O1G	PG	O3G	117.2	300.0
C4'	C5'	H6	H7	116.8	240.0
C4'	C5'	H7	H6	243.2	120.0
H8	C4'	C5'	H6	299.6	185.5
H8	C4'	C5'	H7	57.6	65.5
C2'	C1'	H9	N1	237.8	237.1
H9	C1'	N1	C6	142.7	356.5
O2'	C2'	H10	C3'	238.3	236.3
H10	C2'	C3'	H12	43.1	338.6
H10	C2'	C1'	N1	334.7	37.3
H10	C2'	C1'	H9	95.8	160.2
H11	O2'	C2'	C3'	180.0	298.5
H11	O2'	C2'	H10	302.3	62.2
H12	C3'	C2'	H10	43.1	338.6
H12	C3'	C4'	H8	195.3	236.1
H13	O3'	C3'	H12	56.3	298.9
N1	C6	H14	C5	180.0	180.0
H14	C6	C5	C4	179.9	180.0
H14	C6	C5	H16	359.9	0.1
C2	N3	H15	C4	180.0	180.0
H15	N3	C4	C5	179.7	180.2
H15	N3	C4	O4	359.3	0.0
C6	C5	H16	C4	180.0	179.9
H16	C5	C6	H14	359.9	0.1