PDB Chemical Component 2JX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2JX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S1 |
C2 |
1.774 |
1.713 |
| C2 |
N6 |
1.277 |
1.349 |
| C2 |
N3 |
1.374 |
1.348 |
| N6 |
N5 |
1.472 |
1.401 |
| N3 |
C4 |
1.370 |
1.373 |
| N5 |
C4 |
1.261 |
1.294 |
| C4 |
C7 |
1.540 |
1.507 |
| C7 |
C8 |
1.414 |
1.535 |
| C7 |
O12 |
1.645 |
1.431 |
| C8 |
O9 |
1.472 |
1.432 |
| O12 |
C11 |
1.426 |
1.361 |
| O9 |
C10 |
1.465 |
1.361 |
| C11 |
C10 |
1.421 |
1.389 |
| C11 |
C13 |
1.348 |
1.387 |
| C10 |
C16 |
1.454 |
1.387 |
| C13 |
C14 |
1.462 |
1.383 |
| C16 |
C15 |
1.441 |
1.382 |
| C14 |
C15 |
1.453 |
1.382 |
| N3 |
H1 |
1.000 |
0.971 |
| N6 |
H2 |
1.000 |
0.970 |
| C7 |
H3 |
1.100 |
1.090 |
| C8 |
H4 |
1.100 |
1.090 |
| C8 |
H5 |
1.100 |
1.090 |
| C13 |
H6 |
1.080 |
1.080 |
| C14 |
H7 |
1.080 |
1.081 |
| C15 |
H8 |
1.080 |
1.080 |
| C16 |
H9 |
1.080 |
1.080 |
Bond Angles for 2JX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S1 |
C2 |
N6 |
136.0 |
126.3 |
| N3 |
C2 |
N6 |
113.2 |
107.4 |
| C2 |
N6 |
N5 |
107.2 |
107.3 |
| C2 |
N6 |
H2 |
126.4 |
126.4 |
| C2 |
N3 |
C4 |
99.9 |
108.3 |
| C2 |
N3 |
H1 |
130.0 |
125.9 |
| N3 |
C4 |
C7 |
116.7 |
125.6 |
| C4 |
N3 |
H1 |
130.1 |
125.8 |
| N5 |
C4 |
C7 |
125.1 |
125.6 |
| C4 |
C7 |
C8 |
120.9 |
109.7 |
| C4 |
C7 |
O12 |
103.5 |
109.8 |
| C4 |
C7 |
H3 |
107.1 |
109.7 |
| C8 |
C7 |
O12 |
109.8 |
108.2 |
| C7 |
C8 |
O9 |
120.2 |
108.3 |
| C8 |
C7 |
H3 |
108.6 |
109.7 |
| C7 |
C8 |
H4 |
106.7 |
109.7 |
| C7 |
C8 |
H5 |
106.7 |
109.7 |
| C7 |
O12 |
C11 |
111.9 |
116.7 |
| O12 |
C7 |
H3 |
105.9 |
109.8 |
| C8 |
O9 |
C10 |
112.0 |
116.7 |
| O9 |
C8 |
H4 |
106.7 |
109.7 |
| O9 |
C8 |
H5 |
106.7 |
109.7 |
| O12 |
C11 |
C13 |
123.1 |
119.4 |
| O9 |
C10 |
C16 |
121.4 |
119.4 |
| C11 |
C10 |
C16 |
121.1 |
119.8 |
| C11 |
C13 |
C14 |
121.6 |
120.0 |
| C11 |
C13 |
H6 |
119.2 |
120.0 |
| C10 |
C16 |
C15 |
118.6 |
120.1 |
| C10 |
C16 |
H9 |
120.7 |
120.0 |
| C13 |
C14 |
C15 |
119.2 |
120.1 |
| C14 |
C13 |
H6 |
119.2 |
120.0 |
| C13 |
C14 |
H7 |
120.4 |
119.9 |
| C16 |
C15 |
H8 |
120.6 |
119.9 |
| C15 |
C14 |
H7 |
120.4 |
120.0 |
| C14 |
C15 |
H8 |
120.6 |
119.9 |
| H4 |
C8 |
H5 |
109.5 |
109.7 |
Torsion Angles for 2JX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
S1 |
N6 |
180.1 |
179.7 |
| S1 |
C2 |
N6 |
N5 |
180.1 |
179.8 |
| S1 |
C2 |
N6 |
H2 |
0.1 |
359.7 |
| S1 |
C2 |
N3 |
C4 |
179.9 |
180.3 |
| S1 |
C2 |
N3 |
H1 |
359.9 |
0.2 |
| N6 |
C2 |
N3 |
C4 |
360.0 |
0.0 |
| N6 |
C2 |
N3 |
H1 |
180.0 |
179.9 |
| S1 |
C2 |
N3 |
N6 |
180.0 |
180.2 |
| N3 |
C2 |
N6 |
N5 |
0.1 |
360.0 |
| N3 |
C2 |
N6 |
H2 |
180.1 |
180.0 |
| C2 |
N3 |
C4 |
C7 |
180.3 |
180.0 |
| C4 |
N3 |
C2 |
H1 |
180.0 |
180.1 |
| C2 |
N6 |
N5 |
H2 |
180.0 |
180.0 |
| N6 |
N5 |
C4 |
C7 |
179.7 |
180.0 |
| C4 |
N3 |
C2 |
N6 |
360.0 |
0.0 |
| C2 |
N3 |
C4 |
H1 |
180.0 |
179.9 |
| N5 |
C4 |
N3 |
C7 |
179.6 |
179.9 |
| N3 |
C4 |
C7 |
C8 |
0.2 |
194.9 |
| N3 |
C4 |
C7 |
O12 |
236.9 |
76.2 |
| N3 |
C4 |
C7 |
H3 |
125.2 |
315.5 |
| C2 |
N6 |
N5 |
C4 |
359.9 |
360.0 |
| N3 |
C4 |
N5 |
C7 |
180.4 |
180.1 |
| N5 |
C4 |
N3 |
H1 |
180.0 |
180.0 |
| N5 |
C4 |
C7 |
C8 |
180.6 |
15.0 |
| N5 |
C4 |
C7 |
O12 |
57.3 |
256.3 |
| N5 |
C4 |
C7 |
H3 |
305.6 |
135.6 |
| C7 |
C4 |
N3 |
H1 |
0.3 |
0.1 |
| C8 |
C7 |
C4 |
O12 |
123.4 |
118.8 |
| C4 |
C7 |
C8 |
O9 |
237.3 |
180.6 |
| C8 |
C7 |
C4 |
H3 |
235.0 |
239.5 |
| C4 |
C7 |
C8 |
H4 |
358.8 |
300.2 |
| C4 |
C7 |
C8 |
H5 |
115.8 |
60.9 |
| C4 |
C7 |
O12 |
C11 |
176.2 |
166.0 |
| O12 |
C7 |
C4 |
H3 |
111.7 |
120.7 |
| C4 |
C7 |
C8 |
O12 |
239.7 |
240.3 |
| C4 |
C7 |
C8 |
H3 |
124.3 |
120.6 |
| C8 |
C7 |
O12 |
C11 |
45.8 |
46.3 |
| O12 |
C7 |
C8 |
H3 |
244.6 |
240.3 |
| C7 |
C8 |
O9 |
C10 |
319.1 |
46.1 |
| O9 |
C8 |
C7 |
H4 |
238.5 |
240.3 |
| O9 |
C8 |
C7 |
H5 |
121.5 |
119.7 |
| H4 |
C8 |
C7 |
H5 |
243.0 |
239.4 |
| C4 |
C7 |
O12 |
C8 |
130.4 |
119.7 |
| C4 |
C7 |
O12 |
H3 |
247.5 |
239.3 |
| O12 |
C7 |
C8 |
O9 |
357.6 |
300.3 |
| C8 |
C7 |
O12 |
H3 |
117.1 |
119.6 |
| O12 |
C7 |
C8 |
H4 |
119.1 |
60.0 |
| O12 |
C7 |
C8 |
H5 |
236.1 |
180.6 |
| C7 |
O12 |
C11 |
C13 |
135.3 |
162.8 |
| O9 |
C8 |
C7 |
O12 |
357.6 |
300.3 |
| O9 |
C8 |
C7 |
H3 |
113.0 |
60.0 |
| C7 |
C8 |
O9 |
H4 |
121.5 |
119.7 |
| C7 |
C8 |
O9 |
H5 |
238.5 |
240.3 |
| C8 |
O9 |
C10 |
C16 |
224.2 |
162.9 |
| H4 |
C8 |
O9 |
H5 |
117.0 |
120.6 |
| C11 |
O12 |
C7 |
H3 |
288.7 |
286.6 |
| O12 |
C11 |
C10 |
C16 |
179.8 |
180.3 |
| O12 |
C11 |
C13 |
C14 |
179.6 |
179.7 |
| O12 |
C11 |
C13 |
H6 |
359.6 |
359.8 |
| C10 |
O9 |
C8 |
H4 |
197.6 |
286.4 |
| C10 |
O9 |
C8 |
H5 |
80.6 |
165.8 |
| C11 |
C10 |
O9 |
C16 |
179.7 |
180.0 |
| O9 |
C10 |
C16 |
C15 |
180.1 |
179.9 |
| O9 |
C10 |
C16 |
H9 |
0.1 |
359.9 |
| C7 |
O12 |
C11 |
C10 |
315.3 |
342.7 |
| O9 |
C10 |
C11 |
C16 |
180.3 |
180.0 |
| C11 |
C10 |
C16 |
C15 |
0.4 |
359.9 |
| C11 |
C10 |
C16 |
H9 |
180.4 |
179.9 |
| C13 |
C11 |
C10 |
C16 |
359.8 |
0.2 |
| C11 |
C13 |
C14 |
C15 |
0.7 |
0.0 |
| C14 |
C13 |
C11 |
H6 |
180.0 |
180.0 |
| C11 |
C13 |
C14 |
H7 |
180.7 |
180.0 |
| C10 |
C16 |
C15 |
H8 |
179.9 |
180.1 |
| C11 |
C13 |
C14 |
H6 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
H7 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
H8 |
179.5 |
180.0 |
| C10 |
C16 |
C15 |
H9 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H7 |
179.6 |
180.0 |
| C14 |
C15 |
C16 |
H8 |
180.0 |
179.9 |
| C10 |
C16 |
C15 |
C14 |
359.9 |
0.0 |
| C15 |
C14 |
C13 |
H6 |
180.7 |
180.0 |
| C13 |
C14 |
C15 |
H7 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H8 |
180.0 |
180.1 |
| H1 |
N3 |
C2 |
N6 |
180.0 |
179.9 |
| C2 |
N3 |
H1 |
C4 |
180.0 |
180.1 |
| H1 |
N3 |
C4 |
C7 |
0.3 |
0.1 |
| C2 |
N6 |
H2 |
N5 |
180.0 |
180.0 |
| C4 |
C7 |
H3 |
C8 |
227.9 |
239.4 |
| C4 |
C7 |
H3 |
O12 |
110.0 |
120.7 |
| C8 |
C7 |
H3 |
O12 |
242.1 |
241.3 |
| H3 |
C7 |
C8 |
O9 |
113.0 |
60.0 |
| H3 |
C7 |
C8 |
H4 |
234.5 |
179.6 |
| H3 |
C7 |
C8 |
H5 |
351.5 |
300.3 |
| H3 |
C7 |
O12 |
C11 |
288.7 |
286.6 |
| H4 |
C8 |
C7 |
O12 |
119.1 |
60.0 |
| C7 |
C8 |
H4 |
O9 |
230.3 |
241.2 |
| H4 |
C8 |
C7 |
H3 |
234.5 |
179.6 |
| C7 |
C8 |
H4 |
H5 |
115.2 |
120.6 |
| H4 |
C8 |
O9 |
C10 |
197.6 |
286.4 |
| O9 |
C8 |
H4 |
H5 |
244.9 |
239.4 |
| H5 |
C8 |
C7 |
O12 |
236.1 |
180.6 |
| C7 |
C8 |
H5 |
O9 |
129.7 |
118.8 |
| H5 |
C8 |
C7 |
H3 |
351.5 |
300.3 |
| C7 |
C8 |
H5 |
H4 |
244.8 |
239.4 |
| H5 |
C8 |
O9 |
C10 |
80.6 |
165.8 |
| O9 |
C8 |
H5 |
H4 |
115.1 |
120.5 |
| C11 |
C13 |
H6 |
C14 |
180.0 |
180.0 |
| H6 |
C13 |
C14 |
C15 |
180.7 |
180.0 |
| H6 |
C13 |
C14 |
H7 |
0.7 |
0.0 |
| C13 |
C14 |
H7 |
C15 |
180.0 |
180.0 |
| H7 |
C14 |
C13 |
H6 |
0.7 |
0.0 |
| H7 |
C14 |
C15 |
H8 |
359.5 |
360.0 |
| H8 |
C15 |
C14 |
H7 |
359.5 |
360.0 |
| C10 |
C16 |
H9 |
C15 |
180.0 |
180.0 |
| H9 |
C16 |
C15 |
H8 |
359.9 |
0.1 |