PDB Chemical Component 2J1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2J1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1 |
C13 |
1.330 |
1.215 |
| C13 |
O2 |
1.218 |
1.348 |
| C13 |
C12 |
1.499 |
1.473 |
| C11 |
C12 |
1.396 |
1.394 |
| C11 |
C4 |
1.393 |
1.386 |
| C12 |
C1 |
1.495 |
1.404 |
| C4 |
N |
1.351 |
1.379 |
| C4 |
C3 |
1.487 |
1.411 |
| N |
C5 |
1.352 |
1.363 |
| C1 |
CL |
1.794 |
1.736 |
| C1 |
C2 |
1.394 |
1.363 |
| C5 |
C10 |
1.510 |
1.512 |
| C5 |
C6 |
1.484 |
1.349 |
| C3 |
C2 |
1.390 |
1.399 |
| C3 |
C6 |
1.476 |
1.457 |
| C10 |
C9 |
1.533 |
1.533 |
| C6 |
C7 |
1.510 |
1.506 |
| C9 |
C8 |
1.536 |
1.531 |
| C7 |
C8 |
1.533 |
1.534 |
| C2 |
H1 |
1.080 |
1.080 |
| C7 |
H2 |
1.100 |
1.090 |
| C7 |
H3 |
1.100 |
1.089 |
| C8 |
H4 |
1.100 |
1.090 |
| C8 |
H5 |
1.100 |
1.090 |
| C9 |
H6 |
1.100 |
1.091 |
| C9 |
H7 |
1.100 |
1.090 |
| C10 |
H8 |
1.100 |
1.090 |
| C10 |
H9 |
1.100 |
1.089 |
| N |
H10 |
1.000 |
0.971 |
| C11 |
H11 |
1.080 |
1.080 |
| O2 |
H12 |
0.950 |
0.967 |
Bond Angles for 2J1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
O2 |
H12 |
109.5 |
117.1 |
| C12 |
C11 |
H11 |
120.2 |
120.1 |
| C4 |
N |
H10 |
124.0 |
125.1 |
| C1 |
C2 |
H1 |
121.0 |
119.9 |
| C5 |
C10 |
H8 |
109.6 |
109.6 |
| C5 |
C10 |
H9 |
109.6 |
109.8 |
| C3 |
C2 |
H1 |
121.0 |
120.0 |
| C3 |
C6 |
C7 |
130.9 |
127.9 |
| C10 |
C9 |
H6 |
108.1 |
109.5 |
| C10 |
C9 |
H7 |
108.1 |
109.5 |
| C6 |
C7 |
C8 |
107.7 |
108.4 |
| C6 |
C7 |
H2 |
109.9 |
109.6 |
| C6 |
C7 |
H3 |
109.9 |
109.7 |
| C9 |
C8 |
H4 |
108.2 |
109.5 |
| C9 |
C8 |
H5 |
108.2 |
109.5 |
| C8 |
C7 |
H2 |
109.9 |
109.6 |
| C8 |
C7 |
H3 |
109.9 |
109.6 |
| C7 |
C8 |
H4 |
108.2 |
109.5 |
| C7 |
C8 |
H5 |
108.2 |
109.5 |
| H2 |
C7 |
H3 |
109.5 |
109.8 |
| H4 |
C8 |
H5 |
109.5 |
109.4 |
| H6 |
C9 |
H7 |
109.5 |
109.5 |
| H8 |
C10 |
H9 |
109.5 |
109.7 |
Torsion Angles for 2J1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C13 |
O2 |
H12 |
360.0 |
0.0 |
| C13 |
C12 |
C11 |
H11 |
359.9 |
359.5 |
| C11 |
C4 |
N |
H10 |
0.0 |
0.1 |
| C12 |
C1 |
C2 |
H1 |
179.9 |
180.2 |
| C4 |
C3 |
C2 |
H1 |
180.1 |
180.2 |
| N |
C5 |
C10 |
H8 |
287.9 |
43.6 |
| N |
C5 |
C10 |
H9 |
48.0 |
283.0 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
179.9 |
| C5 |
C10 |
C9 |
H6 |
162.4 |
290.3 |
| C5 |
C10 |
C9 |
H7 |
280.8 |
170.3 |
| H8 |
C10 |
C5 |
H9 |
239.9 |
120.5 |
| C5 |
C6 |
C7 |
H2 |
103.9 |
103.3 |
| C5 |
C6 |
C7 |
H3 |
224.5 |
224.0 |
| C1 |
C2 |
C3 |
H1 |
180.0 |
180.1 |
| C6 |
C3 |
C2 |
H1 |
0.0 |
0.1 |
| C3 |
C6 |
C7 |
C8 |
164.0 |
163.5 |
| C3 |
C6 |
C7 |
H2 |
283.7 |
283.2 |
| C3 |
C6 |
C7 |
H3 |
44.3 |
43.8 |
| C10 |
C9 |
C8 |
H4 |
57.9 |
170.0 |
| C10 |
C9 |
C8 |
H5 |
176.5 |
50.0 |
| H6 |
C9 |
C10 |
H7 |
241.6 |
120.0 |
| C8 |
C7 |
C6 |
H2 |
240.3 |
240.4 |
| C8 |
C7 |
C6 |
H3 |
119.7 |
119.7 |
| C6 |
C7 |
C8 |
H4 |
284.3 |
169.5 |
| C6 |
C7 |
C8 |
H5 |
165.7 |
289.5 |
| H2 |
C7 |
C6 |
H3 |
239.4 |
239.3 |
| C9 |
C8 |
C7 |
H2 |
285.3 |
289.9 |
| C9 |
C8 |
C7 |
H3 |
164.7 |
169.3 |
| C7 |
C8 |
C9 |
H4 |
239.3 |
120.0 |
| C7 |
C8 |
C9 |
H5 |
120.7 |
240.0 |
| H4 |
C8 |
C9 |
H5 |
241.4 |
120.0 |
| C6 |
C7 |
C8 |
H2 |
119.7 |
119.6 |
| C6 |
C7 |
C8 |
H3 |
240.3 |
240.3 |
| C9 |
C8 |
C7 |
H4 |
120.7 |
240.0 |
| C9 |
C8 |
C7 |
H5 |
239.2 |
120.0 |
| H2 |
C7 |
C8 |
H3 |
120.6 |
120.6 |
| H4 |
C8 |
C7 |
H5 |
118.5 |
240.0 |
| C6 |
C7 |
H2 |
C8 |
241.6 |
241.1 |
| C6 |
C7 |
H2 |
H3 |
120.8 |
120.6 |
| C8 |
C7 |
H2 |
H3 |
239.2 |
239.5 |
| H2 |
C7 |
C8 |
H4 |
164.5 |
49.9 |
| H2 |
C7 |
C8 |
H5 |
46.0 |
169.9 |
| C6 |
C7 |
H3 |
C8 |
118.4 |
118.9 |
| C6 |
C7 |
H3 |
H2 |
239.2 |
239.5 |
| C8 |
C7 |
H3 |
H2 |
120.8 |
120.5 |
| H3 |
C7 |
C8 |
H4 |
44.0 |
289.2 |
| H3 |
C7 |
C8 |
H5 |
285.5 |
49.2 |
| C9 |
C8 |
H4 |
H5 |
117.8 |
239.9 |
| H4 |
C8 |
C7 |
H2 |
164.5 |
49.9 |
| H4 |
C8 |
C7 |
H3 |
44.0 |
289.2 |
| C7 |
C8 |
H4 |
H5 |
242.3 |
120.0 |
| C9 |
C8 |
H5 |
H4 |
242.2 |
120.0 |
| H5 |
C8 |
C7 |
H2 |
46.0 |
169.9 |
| H5 |
C8 |
C7 |
H3 |
285.5 |
49.2 |
| C7 |
C8 |
H5 |
H4 |
117.7 |
240.0 |
| C10 |
C9 |
H6 |
H7 |
117.6 |
240.0 |
| H6 |
C9 |
C8 |
H4 |
297.1 |
290.0 |
| H6 |
C9 |
C8 |
H5 |
55.6 |
170.0 |
| C10 |
C9 |
H7 |
H6 |
242.4 |
120.0 |
| H7 |
C9 |
C8 |
H4 |
178.7 |
49.9 |
| H7 |
C9 |
C8 |
H5 |
297.2 |
289.9 |
| C5 |
C10 |
H8 |
H9 |
120.2 |
239.3 |
| H8 |
C10 |
C9 |
H6 |
42.5 |
50.0 |
| H8 |
C10 |
C9 |
H7 |
160.9 |
290.0 |
| C5 |
C10 |
H9 |
H8 |
239.8 |
120.5 |
| H9 |
C10 |
C9 |
H6 |
282.4 |
170.3 |
| H9 |
C10 |
C9 |
H7 |
40.8 |
50.4 |