Atom Nomenclature for 2HV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2HV

Atom Name (V3) Atom Name (V2)
O1 O1
C5 C5
C3 C3
N1 N1
C4 C4
S S
C2 C2
N N
C1 C1
O O
C C
N2 N2
C6 C6
C11 C11
C10 C10
C9 C9
C8 C8
C7 C7
N3 N3
C16 C16
C15 C15
C14 C14
C13 C13
C12 C12
H4 H4
H3 H3
H1 H1
H2 H2
H H
H5 H5
H9 H9
H8 H8
H7 H7
H6 H6
H18 H18
H19 H19
H16 H16
H17 H17
H14 H14
H15 H15
H12 H12
H13 H13
H11 H11
H10 H10