PDB Chemical Component 2HB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2HB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O29 |
S3 |
1.429 |
1.421 |
C2 |
S3 |
1.660 |
1.818 |
C2 |
C1 |
1.525 |
1.532 |
O30 |
S3 |
1.430 |
1.420 |
S3 |
C4 |
1.670 |
1.819 |
C1 |
N6 |
1.469 |
1.466 |
C4 |
C5 |
1.533 |
1.532 |
C5 |
N6 |
1.475 |
1.464 |
N6 |
C7 |
1.469 |
1.469 |
C7 |
C8 |
1.521 |
1.507 |
C13 |
C8 |
1.396 |
1.384 |
C13 |
C12 |
1.395 |
1.379 |
C8 |
C9 |
1.400 |
1.383 |
C12 |
C11 |
1.401 |
1.396 |
C9 |
C10 |
1.386 |
1.380 |
C11 |
C10 |
1.404 |
1.396 |
C11 |
C14 |
1.483 |
1.477 |
O25 |
C24 |
1.229 |
1.212 |
C14 |
C15 |
1.397 |
1.366 |
C14 |
N19 |
1.350 |
1.367 |
C15 |
C16 |
1.394 |
1.398 |
N20 |
N19 |
1.410 |
1.402 |
N20 |
C21 |
1.352 |
1.318 |
N19 |
C18 |
1.333 |
1.366 |
C28 |
C27 |
1.523 |
1.531 |
C28 |
C26 |
1.527 |
1.530 |
C24 |
C26 |
1.519 |
1.507 |
C24 |
N23 |
1.335 |
1.349 |
C27 |
C26 |
1.531 |
1.530 |
C16 |
C17 |
1.389 |
1.364 |
C21 |
N23 |
1.350 |
1.396 |
C21 |
N22 |
1.354 |
1.329 |
C18 |
C17 |
1.387 |
1.406 |
C18 |
N22 |
1.356 |
1.330 |
C5 |
H1 |
1.100 |
1.090 |
C5 |
H2 |
1.100 |
1.091 |
C2 |
H3 |
1.100 |
1.090 |
C2 |
H4 |
1.100 |
1.090 |
C4 |
H5 |
1.100 |
1.090 |
C4 |
H6 |
1.100 |
1.090 |
C1 |
H7 |
1.100 |
1.089 |
C1 |
H8 |
1.101 |
1.090 |
C7 |
H9 |
1.099 |
1.090 |
C7 |
H10 |
1.100 |
1.090 |
C9 |
H11 |
1.080 |
1.080 |
C10 |
H12 |
1.080 |
1.080 |
C12 |
H13 |
1.080 |
1.081 |
C13 |
H14 |
1.081 |
1.080 |
C15 |
H15 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
C17 |
H17 |
1.080 |
1.080 |
C26 |
H18 |
1.100 |
1.090 |
C27 |
H19 |
1.100 |
1.090 |
C27 |
H20 |
1.100 |
1.090 |
C28 |
H21 |
1.100 |
1.090 |
C28 |
H22 |
1.100 |
1.090 |
N23 |
H24 |
1.000 |
0.970 |
Bond Angles for 2HB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
C2 |
S3 |
112.1 |
108.7 |
C2 |
S3 |
O30 |
110.9 |
108.7 |
C2 |
S3 |
C4 |
109.5 |
101.0 |
S3 |
C2 |
H3 |
108.8 |
109.6 |
S3 |
C2 |
H4 |
108.8 |
109.6 |
C2 |
C1 |
N6 |
109.6 |
109.9 |
C1 |
C2 |
H3 |
108.8 |
109.7 |
C1 |
C2 |
H4 |
108.8 |
109.6 |
C2 |
C1 |
H7 |
109.4 |
109.4 |
C2 |
C1 |
H8 |
109.4 |
109.4 |
S3 |
C4 |
H5 |
109.4 |
109.6 |
S3 |
C4 |
H6 |
109.3 |
109.8 |
C5 |
N6 |
C1 |
123.0 |
112.5 |
C1 |
N6 |
C7 |
117.6 |
111.0 |
N6 |
C1 |
H7 |
109.4 |
109.4 |
N6 |
C1 |
H8 |
109.4 |
109.3 |
C4 |
C5 |
N6 |
107.4 |
109.9 |
C4 |
C5 |
H1 |
110.0 |
109.4 |
C4 |
C5 |
H2 |
110.0 |
109.3 |
C5 |
N6 |
C7 |
119.4 |
111.0 |
N6 |
C5 |
H1 |
110.0 |
109.4 |
N6 |
C5 |
H2 |
110.0 |
109.4 |
N6 |
C7 |
H9 |
109.7 |
109.5 |
N6 |
C7 |
H10 |
109.7 |
109.5 |
C7 |
C8 |
C9 |
118.4 |
119.9 |
C13 |
C12 |
H13 |
120.3 |
120.1 |
C8 |
C9 |
C10 |
119.5 |
120.2 |
C8 |
C9 |
H11 |
120.3 |
119.9 |
C12 |
C11 |
C14 |
122.1 |
120.2 |
C10 |
C9 |
H11 |
120.2 |
119.9 |
C9 |
C10 |
H12 |
120.2 |
120.1 |
C11 |
C10 |
H12 |
120.2 |
120.1 |
C11 |
C14 |
C15 |
119.3 |
119.9 |
C11 |
C14 |
N19 |
120.4 |
119.8 |
C15 |
C14 |
N19 |
120.3 |
120.3 |
C14 |
C15 |
C16 |
119.0 |
120.1 |
C14 |
C15 |
H15 |
120.5 |
120.0 |
C14 |
N19 |
C18 |
121.5 |
120.5 |
C15 |
C16 |
C17 |
119.0 |
119.7 |
C16 |
C15 |
H15 |
120.5 |
119.9 |
C15 |
C16 |
H16 |
120.5 |
120.1 |
N20 |
C21 |
N23 |
125.4 |
125.2 |
N20 |
C21 |
N22 |
115.2 |
109.5 |
N19 |
C18 |
N22 |
106.0 |
107.5 |
C28 |
C27 |
H19 |
120.0 |
117.5 |
C28 |
C27 |
H20 |
120.0 |
117.5 |
C28 |
C26 |
H18 |
119.0 |
117.5 |
C26 |
C24 |
N23 |
113.6 |
120.0 |
C24 |
C26 |
H18 |
119.2 |
115.5 |
C21 |
N23 |
C24 |
128.3 |
120.0 |
C24 |
N23 |
H24 |
115.8 |
120.0 |
C27 |
C26 |
H18 |
118.9 |
117.5 |
C17 |
C16 |
H16 |
120.5 |
120.1 |
C16 |
C17 |
H17 |
120.2 |
120.2 |
N23 |
C21 |
N22 |
119.4 |
125.3 |
C21 |
N23 |
H24 |
115.9 |
120.0 |
C18 |
N22 |
C21 |
106.0 |
109.6 |
C18 |
C17 |
H17 |
120.2 |
120.3 |
H1 |
C5 |
H2 |
109.5 |
109.4 |
H3 |
C2 |
H4 |
109.5 |
109.7 |
H5 |
C4 |
H6 |
109.5 |
109.6 |
H7 |
C1 |
H8 |
109.4 |
109.4 |
H9 |
C7 |
H10 |
109.5 |
109.5 |
H19 |
C27 |
H20 |
109.5 |
115.6 |
H21 |
C28 |
H22 |
109.5 |
115.6 |
Torsion Angles for 2HB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O29 |
S3 |
C2 |
H3 |
325.7 |
178.3 |
O29 |
S3 |
C2 |
H4 |
84.9 |
57.9 |
O29 |
S3 |
C4 |
H5 |
214.0 |
302.2 |
O29 |
S3 |
C4 |
H6 |
333.9 |
181.8 |
S3 |
C2 |
C1 |
N6 |
55.2 |
297.3 |
C1 |
C2 |
S3 |
H3 |
239.6 |
119.9 |
C1 |
C2 |
S3 |
H4 |
120.4 |
240.3 |
S3 |
C2 |
C1 |
H7 |
175.3 |
57.4 |
S3 |
C2 |
C1 |
H8 |
295.2 |
177.3 |
C2 |
S3 |
C4 |
H5 |
97.0 |
187.9 |
C2 |
S3 |
C4 |
H6 |
216.9 |
67.5 |
H3 |
C2 |
S3 |
H4 |
240.7 |
120.4 |
C1 |
C2 |
S3 |
O30 |
86.2 |
166.6 |
C1 |
C2 |
S3 |
C4 |
324.5 |
52.4 |
S3 |
C2 |
C1 |
H3 |
120.4 |
240.2 |
S3 |
C2 |
C1 |
H4 |
239.6 |
119.7 |
C5 |
N6 |
C1 |
C2 |
345.7 |
71.9 |
C2 |
C1 |
N6 |
C7 |
166.8 |
197.0 |
N6 |
C1 |
C2 |
H7 |
240.0 |
239.9 |
N6 |
C1 |
C2 |
H8 |
120.0 |
120.0 |
H3 |
C2 |
C1 |
H4 |
119.2 |
239.5 |
H7 |
C1 |
C2 |
H8 |
240.1 |
240.2 |
C2 |
S3 |
O30 |
C4 |
238.7 |
250.9 |
O30 |
S3 |
C2 |
H3 |
206.5 |
46.7 |
O30 |
S3 |
C2 |
H4 |
325.8 |
286.3 |
O30 |
S3 |
C4 |
H5 |
334.9 |
73.7 |
O30 |
S3 |
C4 |
H6 |
94.8 |
313.3 |
C2 |
S3 |
C4 |
O30 |
122.1 |
114.2 |
C4 |
S3 |
C2 |
H3 |
84.9 |
292.5 |
C4 |
S3 |
C2 |
H4 |
204.1 |
172.1 |
S3 |
C4 |
C5 |
N6 |
62.1 |
62.6 |
S3 |
C4 |
C5 |
H1 |
181.8 |
182.8 |
S3 |
C4 |
C5 |
H2 |
302.5 |
302.6 |
H5 |
C4 |
S3 |
H6 |
240.1 |
120.4 |
N6 |
C1 |
C2 |
S3 |
55.2 |
297.3 |
N6 |
C1 |
C2 |
H3 |
294.8 |
57.2 |
N6 |
C1 |
C2 |
H4 |
175.6 |
177.6 |
C2 |
C1 |
N6 |
H7 |
120.0 |
120.1 |
C2 |
C1 |
N6 |
H8 |
240.0 |
239.9 |
C4 |
C5 |
N6 |
C1 |
313.7 |
288.1 |
C5 |
N6 |
C1 |
C7 |
178.9 |
234.9 |
C1 |
N6 |
C5 |
H1 |
194.0 |
167.9 |
C1 |
N6 |
C5 |
H2 |
73.3 |
48.1 |
C1 |
N6 |
C7 |
H9 |
190.4 |
284.2 |
C1 |
N6 |
C7 |
H10 |
310.7 |
164.1 |
H7 |
C1 |
N6 |
H8 |
119.9 |
119.7 |
C4 |
C5 |
N6 |
C7 |
132.6 |
163.0 |
N6 |
C5 |
C4 |
H1 |
240.3 |
239.8 |
N6 |
C5 |
C4 |
H2 |
119.7 |
120.1 |
H1 |
C5 |
C4 |
H2 |
239.3 |
240.3 |
C2 |
C1 |
N6 |
C5 |
345.7 |
71.9 |
C1 |
N6 |
C5 |
C7 |
181.1 |
125.0 |
C5 |
N6 |
C1 |
H7 |
225.7 |
311.8 |
C5 |
N6 |
C1 |
H8 |
105.7 |
192.1 |
C4 |
C5 |
N6 |
H1 |
119.7 |
120.2 |
C4 |
C5 |
N6 |
H2 |
240.3 |
240.0 |
C5 |
N6 |
C7 |
H9 |
11.4 |
50.0 |
C5 |
N6 |
C7 |
H10 |
131.7 |
290.0 |
H1 |
C5 |
N6 |
H2 |
120.6 |
119.8 |
C5 |
N6 |
C7 |
C1 |
181.1 |
125.9 |
C7 |
N6 |
C1 |
H7 |
46.8 |
76.9 |
C7 |
N6 |
C1 |
H8 |
286.8 |
317.1 |
C7 |
N6 |
C5 |
H1 |
12.9 |
42.8 |
C7 |
N6 |
C5 |
H2 |
252.2 |
283.0 |
H9 |
C7 |
N6 |
H10 |
239.7 |
120.0 |
C7 |
C8 |
C9 |
C10 |
180.5 |
180.0 |
C7 |
C8 |
C9 |
H11 |
0.5 |
360.0 |
C13 |
C8 |
C9 |
H11 |
179.5 |
180.2 |
C13 |
C12 |
C11 |
C14 |
178.2 |
179.8 |
C10 |
C9 |
C8 |
H11 |
180.0 |
180.1 |
C8 |
C9 |
C10 |
H12 |
180.7 |
180.0 |
C12 |
C11 |
C10 |
H12 |
179.1 |
180.0 |
C12 |
C11 |
C14 |
C15 |
133.4 |
245.0 |
C12 |
C11 |
C14 |
N19 |
309.9 |
64.7 |
C8 |
C9 |
C10 |
H11 |
180.0 |
179.9 |
C11 |
C10 |
C9 |
H12 |
180.0 |
179.9 |
C11 |
C10 |
C9 |
H11 |
180.6 |
180.0 |
C9 |
C10 |
C11 |
H12 |
180.0 |
180.1 |
C14 |
C11 |
C10 |
H12 |
1.6 |
360.0 |
C15 |
C14 |
C11 |
N19 |
183.5 |
180.2 |
C11 |
C14 |
C15 |
C16 |
177.9 |
180.0 |
C11 |
C14 |
C15 |
H15 |
357.9 |
0.0 |
C11 |
C14 |
N19 |
C18 |
181.9 |
179.7 |
O25 |
C24 |
C26 |
H18 |
199.1 |
214.4 |
O25 |
C24 |
N23 |
H24 |
182.9 |
180.0 |
C11 |
C14 |
C15 |
N19 |
176.5 |
179.8 |
C15 |
C14 |
N19 |
C18 |
358.4 |
359.5 |
C14 |
C15 |
C16 |
C17 |
359.8 |
360.0 |
C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
H16 |
179.8 |
180.0 |
C11 |
C14 |
N19 |
C15 |
183.5 |
180.2 |
N19 |
C14 |
C15 |
C16 |
1.4 |
0.3 |
N19 |
C14 |
C15 |
H15 |
181.4 |
180.3 |
C14 |
N19 |
C18 |
N22 |
181.3 |
180.4 |
C16 |
C15 |
C14 |
N19 |
1.4 |
0.3 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
H17 |
179.2 |
180.0 |
N19 |
N20 |
C21 |
N23 |
179.0 |
180.1 |
N19 |
N20 |
C21 |
N22 |
1.0 |
359.4 |
N20 |
N19 |
C18 |
N22 |
0.5 |
0.1 |
N20 |
C21 |
N23 |
C24 |
18.3 |
179.2 |
N23 |
C21 |
N20 |
N22 |
178.1 |
180.8 |
N20 |
C21 |
N23 |
H24 |
198.3 |
359.1 |
C18 |
N22 |
C21 |
N20 |
359.2 |
0.7 |
N19 |
C18 |
N22 |
C21 |
0.1 |
359.5 |
N19 |
C18 |
C17 |
H17 |
180.6 |
179.8 |
C27 |
C28 |
C26 |
H18 |
108.5 |
107.5 |
C28 |
C27 |
C26 |
H18 |
251.4 |
252.5 |
H19 |
C27 |
C28 |
H20 |
218.9 |
145.1 |
C28 |
C26 |
C24 |
N23 |
229.4 |
248.7 |
C24 |
C26 |
C28 |
H18 |
149.1 |
145.0 |
C27 |
C26 |
C28 |
H18 |
251.5 |
252.5 |
C28 |
C26 |
C24 |
H18 |
210.9 |
214.3 |
C21 |
N23 |
C24 |
C26 |
183.6 |
180.0 |
C26 |
C24 |
N23 |
H24 |
3.5 |
0.0 |
C27 |
C26 |
C24 |
H18 |
145.4 |
145.7 |
N23 |
C24 |
C26 |
H18 |
18.4 |
34.4 |
C24 |
N23 |
C21 |
N22 |
196.3 |
0.1 |
C21 |
N23 |
C24 |
H24 |
180.0 |
179.9 |
C28 |
C26 |
C27 |
H18 |
108.6 |
107.5 |
C27 |
C26 |
C24 |
N23 |
163.9 |
180.1 |
C24 |
C26 |
C27 |
H18 |
214.5 |
215.0 |
C17 |
C16 |
C15 |
H15 |
179.8 |
180.0 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.1 |
N20 |
C21 |
N23 |
N22 |
182.0 |
179.1 |
C26 |
C24 |
N23 |
C21 |
183.6 |
180.0 |
C24 |
N23 |
C21 |
H24 |
180.0 |
180.1 |
C18 |
N22 |
C21 |
N23 |
181.0 |
180.0 |
N20 |
C21 |
N22 |
N23 |
178.2 |
180.8 |
N22 |
C21 |
N23 |
C24 |
196.3 |
0.1 |
N22 |
C21 |
N23 |
H24 |
16.3 |
180.0 |
C14 |
N19 |
C18 |
C17 |
0.6 |
0.6 |
C18 |
C17 |
C16 |
H16 |
179.3 |
180.0 |
C16 |
C17 |
C18 |
H17 |
180.0 |
179.9 |
N20 |
C21 |
N22 |
C18 |
359.2 |
0.7 |
N23 |
C21 |
N22 |
C18 |
181.0 |
180.0 |
N22 |
C18 |
C17 |
H17 |
359.7 |
0.0 |
H1 |
C5 |
N6 |
C1 |
194.0 |
167.9 |
C4 |
C5 |
H1 |
N6 |
241.9 |
239.5 |
C4 |
C5 |
H1 |
H2 |
121.0 |
119.7 |
H1 |
C5 |
N6 |
C7 |
12.9 |
42.8 |
N6 |
C5 |
H1 |
H2 |
239.1 |
240.2 |
H2 |
C5 |
N6 |
C1 |
73.3 |
48.1 |
C4 |
C5 |
H2 |
N6 |
118.1 |
120.4 |
C4 |
C5 |
H2 |
H1 |
239.0 |
240.2 |
H2 |
C5 |
N6 |
C7 |
252.2 |
283.0 |
N6 |
C5 |
H2 |
H1 |
120.9 |
119.8 |
C1 |
C2 |
H3 |
S3 |
122.4 |
240.7 |
H3 |
C2 |
S3 |
O30 |
206.5 |
46.7 |
H3 |
C2 |
S3 |
C4 |
84.9 |
292.5 |
S3 |
C2 |
H3 |
H4 |
118.8 |
239.6 |
H3 |
C2 |
C1 |
N6 |
294.8 |
57.2 |
C1 |
C2 |
H3 |
H4 |
241.2 |
120.4 |
H3 |
C2 |
C1 |
H7 |
54.9 |
177.3 |
H3 |
C2 |
C1 |
H8 |
174.8 |
297.1 |
C1 |
C2 |
H4 |
S3 |
237.6 |
119.2 |
H4 |
C2 |
S3 |
O30 |
325.8 |
286.3 |
H4 |
C2 |
S3 |
C4 |
204.1 |
172.1 |
S3 |
C2 |
H4 |
H3 |
241.2 |
120.4 |
H4 |
C2 |
C1 |
N6 |
175.6 |
177.6 |
C1 |
C2 |
H4 |
H3 |
118.8 |
239.6 |
H4 |
C2 |
C1 |
H7 |
295.7 |
297.7 |
H4 |
C2 |
C1 |
H8 |
55.6 |
57.6 |
S3 |
C4 |
H5 |
H6 |
119.8 |
239.5 |
H5 |
C4 |
C5 |
N6 |
302.1 |
182.4 |
H5 |
C4 |
C5 |
H1 |
61.7 |
302.5 |
H5 |
C4 |
C5 |
H2 |
182.4 |
62.3 |
S3 |
C4 |
H6 |
H5 |
240.2 |
120.4 |
H6 |
C4 |
C5 |
N6 |
182.2 |
302.7 |
H6 |
C4 |
C5 |
H1 |
301.9 |
62.9 |
H6 |
C4 |
C5 |
H2 |
62.5 |
182.6 |
H7 |
C1 |
C2 |
S3 |
175.3 |
57.4 |
C2 |
C1 |
H7 |
N6 |
239.8 |
239.6 |
H7 |
C1 |
C2 |
H3 |
54.9 |
177.3 |
H7 |
C1 |
C2 |
H4 |
295.7 |
297.7 |
C2 |
C1 |
H7 |
H8 |
119.9 |
119.9 |
H7 |
C1 |
N6 |
C7 |
46.8 |
76.9 |
N6 |
C1 |
H7 |
H8 |
240.1 |
240.3 |
H8 |
C1 |
C2 |
S3 |
295.2 |
177.3 |
C2 |
C1 |
H8 |
N6 |
120.2 |
120.4 |
H8 |
C1 |
C2 |
H3 |
174.8 |
297.1 |
H8 |
C1 |
C2 |
H4 |
55.6 |
57.6 |
C2 |
C1 |
H8 |
H7 |
240.1 |
240.1 |
H8 |
C1 |
N6 |
C7 |
286.8 |
317.1 |
N6 |
C1 |
H8 |
H7 |
119.9 |
119.8 |
N6 |
C7 |
H9 |
H10 |
120.4 |
240.0 |
H9 |
C7 |
C8 |
C9 |
332.5 |
210.0 |
N6 |
C7 |
H10 |
H9 |
239.5 |
120.0 |
H10 |
C7 |
C8 |
C9 |
212.2 |
330.0 |
C8 |
C9 |
H11 |
C10 |
180.0 |
180.1 |
H11 |
C9 |
C10 |
H12 |
0.7 |
0.1 |
H12 |
C10 |
C9 |
H11 |
0.7 |
0.1 |
H13 |
C12 |
C11 |
C14 |
358.2 |
360.0 |
H14 |
C13 |
C12 |
H13 |
359.3 |
359.8 |
H15 |
C15 |
C14 |
N19 |
181.4 |
180.3 |
C14 |
C15 |
H15 |
C16 |
180.0 |
180.0 |
H15 |
C15 |
C16 |
C17 |
179.8 |
180.0 |
H15 |
C15 |
C16 |
H16 |
359.8 |
360.0 |
C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
H16 |
C16 |
C15 |
H15 |
359.8 |
360.0 |
H16 |
C16 |
C17 |
H17 |
359.3 |
359.9 |
H17 |
C17 |
C16 |
H16 |
359.3 |
359.9 |
H18 |
C26 |
C24 |
N23 |
18.4 |
34.4 |
C28 |
C27 |
H19 |
H20 |
144.7 |
214.2 |
H19 |
C27 |
C26 |
H18 |
141.9 |
360.0 |
C28 |
C27 |
H20 |
H19 |
215.3 |
145.7 |
H20 |
C27 |
C26 |
H18 |
0.8 |
145.0 |
H21 |
C28 |
C27 |
H19 |
219.0 |
145.1 |
H21 |
C28 |
C27 |
H20 |
0.1 |
360.0 |
H21 |
C28 |
C26 |
H18 |
358.9 |
215.0 |
H22 |
C28 |
C27 |
H19 |
359.9 |
0.0 |
H22 |
C28 |
C27 |
H20 |
141.0 |
214.9 |
H22 |
C28 |
C26 |
H18 |
218.0 |
0.1 |
C21 |
N23 |
H24 |
C24 |
180.0 |
180.1 |
H24 |
N23 |
C21 |
N22 |
16.3 |
180.0 |