PDB Chemical Component 2HB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2HB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O29 S3 1.429 1.421
C2 S3 1.660 1.818
C2 C1 1.525 1.532
O30 S3 1.430 1.420
S3 C4 1.670 1.819
C1 N6 1.469 1.466
C4 C5 1.533 1.532
C5 N6 1.475 1.464
N6 C7 1.469 1.469
C7 C8 1.521 1.507
C13 C8 1.396 1.384
C13 C12 1.395 1.379
C8 C9 1.400 1.383
C12 C11 1.401 1.396
C9 C10 1.386 1.380
C11 C10 1.404 1.396
C11 C14 1.483 1.477
O25 C24 1.229 1.212
C14 C15 1.397 1.366
C14 N19 1.350 1.367
C15 C16 1.394 1.398
N20 N19 1.410 1.402
N20 C21 1.352 1.318
N19 C18 1.333 1.366
C28 C27 1.523 1.531
C28 C26 1.527 1.530
C24 C26 1.519 1.507
C24 N23 1.335 1.349
C27 C26 1.531 1.530
C16 C17 1.389 1.364
C21 N23 1.350 1.396
C21 N22 1.354 1.329
C18 C17 1.387 1.406
C18 N22 1.356 1.330
C5 H1 1.100 1.090
C5 H2 1.100 1.091
C2 H3 1.100 1.090
C2 H4 1.100 1.090
C4 H5 1.100 1.090
C4 H6 1.100 1.090
C1 H7 1.100 1.089
C1 H8 1.101 1.090
C7 H9 1.099 1.090
C7 H10 1.100 1.090
C9 H11 1.080 1.080
C10 H12 1.080 1.080
C12 H13 1.080 1.081
C13 H14 1.081 1.080
C15 H15 1.080 1.080
C16 H16 1.080 1.080
C17 H17 1.080 1.080
C26 H18 1.100 1.090
C27 H19 1.100 1.090
C27 H20 1.100 1.090
C28 H21 1.100 1.090
C28 H22 1.100 1.090
N23 H24 1.000 0.970

Bond Angles for 2HB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C2 S3 112.1 108.7
C2 S3 O30 110.9 108.7
C2 S3 C4 109.5 101.0
S3 C2 H3 108.8 109.6
S3 C2 H4 108.8 109.6
C2 C1 N6 109.6 109.9
C1 C2 H3 108.8 109.7
C1 C2 H4 108.8 109.6
C2 C1 H7 109.4 109.4
C2 C1 H8 109.4 109.4
S3 C4 H5 109.4 109.6
S3 C4 H6 109.3 109.8
C5 N6 C1 123.0 112.5
C1 N6 C7 117.6 111.0
N6 C1 H7 109.4 109.4
N6 C1 H8 109.4 109.3
C4 C5 N6 107.4 109.9
C4 C5 H1 110.0 109.4
C4 C5 H2 110.0 109.3
C5 N6 C7 119.4 111.0
N6 C5 H1 110.0 109.4
N6 C5 H2 110.0 109.4
N6 C7 H9 109.7 109.5
N6 C7 H10 109.7 109.5
C7 C8 C9 118.4 119.9
C13 C12 H13 120.3 120.1
C8 C9 C10 119.5 120.2
C8 C9 H11 120.3 119.9
C12 C11 C14 122.1 120.2
C10 C9 H11 120.2 119.9
C9 C10 H12 120.2 120.1
C11 C10 H12 120.2 120.1
C11 C14 C15 119.3 119.9
C11 C14 N19 120.4 119.8
C15 C14 N19 120.3 120.3
C14 C15 C16 119.0 120.1
C14 C15 H15 120.5 120.0
C14 N19 C18 121.5 120.5
C15 C16 C17 119.0 119.7
C16 C15 H15 120.5 119.9
C15 C16 H16 120.5 120.1
N20 C21 N23 125.4 125.2
N20 C21 N22 115.2 109.5
N19 C18 N22 106.0 107.5
C28 C27 H19 120.0 117.5
C28 C27 H20 120.0 117.5
C28 C26 H18 119.0 117.5
C26 C24 N23 113.6 120.0
C24 C26 H18 119.2 115.5
C21 N23 C24 128.3 120.0
C24 N23 H24 115.8 120.0
C27 C26 H18 118.9 117.5
C17 C16 H16 120.5 120.1
C16 C17 H17 120.2 120.2
N23 C21 N22 119.4 125.3
C21 N23 H24 115.9 120.0
C18 N22 C21 106.0 109.6
C18 C17 H17 120.2 120.3
H1 C5 H2 109.5 109.4
H3 C2 H4 109.5 109.7
H5 C4 H6 109.5 109.6
H7 C1 H8 109.4 109.4
H9 C7 H10 109.5 109.5
H19 C27 H20 109.5 115.6
H21 C28 H22 109.5 115.6

Torsion Angles for 2HB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O29 S3 C2 H3 325.7 178.3
O29 S3 C2 H4 84.9 57.9
O29 S3 C4 H5 214.0 302.2
O29 S3 C4 H6 333.9 181.8
S3 C2 C1 N6 55.2 297.3
C1 C2 S3 H3 239.6 119.9
C1 C2 S3 H4 120.4 240.3
S3 C2 C1 H7 175.3 57.4
S3 C2 C1 H8 295.2 177.3
C2 S3 C4 H5 97.0 187.9
C2 S3 C4 H6 216.9 67.5
H3 C2 S3 H4 240.7 120.4
C1 C2 S3 O30 86.2 166.6
C1 C2 S3 C4 324.5 52.4
S3 C2 C1 H3 120.4 240.2
S3 C2 C1 H4 239.6 119.7
C5 N6 C1 C2 345.7 71.9
C2 C1 N6 C7 166.8 197.0
N6 C1 C2 H7 240.0 239.9
N6 C1 C2 H8 120.0 120.0
H3 C2 C1 H4 119.2 239.5
H7 C1 C2 H8 240.1 240.2
C2 S3 O30 C4 238.7 250.9
O30 S3 C2 H3 206.5 46.7
O30 S3 C2 H4 325.8 286.3
O30 S3 C4 H5 334.9 73.7
O30 S3 C4 H6 94.8 313.3
C2 S3 C4 O30 122.1 114.2
C4 S3 C2 H3 84.9 292.5
C4 S3 C2 H4 204.1 172.1
S3 C4 C5 N6 62.1 62.6
S3 C4 C5 H1 181.8 182.8
S3 C4 C5 H2 302.5 302.6
H5 C4 S3 H6 240.1 120.4
N6 C1 C2 S3 55.2 297.3
N6 C1 C2 H3 294.8 57.2
N6 C1 C2 H4 175.6 177.6
C2 C1 N6 H7 120.0 120.1
C2 C1 N6 H8 240.0 239.9
C4 C5 N6 C1 313.7 288.1
C5 N6 C1 C7 178.9 234.9
C1 N6 C5 H1 194.0 167.9
C1 N6 C5 H2 73.3 48.1
C1 N6 C7 H9 190.4 284.2
C1 N6 C7 H10 310.7 164.1
H7 C1 N6 H8 119.9 119.7
C4 C5 N6 C7 132.6 163.0
N6 C5 C4 H1 240.3 239.8
N6 C5 C4 H2 119.7 120.1
H1 C5 C4 H2 239.3 240.3
C2 C1 N6 C5 345.7 71.9
C1 N6 C5 C7 181.1 125.0
C5 N6 C1 H7 225.7 311.8
C5 N6 C1 H8 105.7 192.1
C4 C5 N6 H1 119.7 120.2
C4 C5 N6 H2 240.3 240.0
C5 N6 C7 H9 11.4 50.0
C5 N6 C7 H10 131.7 290.0
H1 C5 N6 H2 120.6 119.8
C5 N6 C7 C1 181.1 125.9
C7 N6 C1 H7 46.8 76.9
C7 N6 C1 H8 286.8 317.1
C7 N6 C5 H1 12.9 42.8
C7 N6 C5 H2 252.2 283.0
H9 C7 N6 H10 239.7 120.0
C7 C8 C9 C10 180.5 180.0
C7 C8 C9 H11 0.5 360.0
C13 C8 C9 H11 179.5 180.2
C13 C12 C11 C14 178.2 179.8
C10 C9 C8 H11 180.0 180.1
C8 C9 C10 H12 180.7 180.0
C12 C11 C10 H12 179.1 180.0
C12 C11 C14 C15 133.4 245.0
C12 C11 C14 N19 309.9 64.7
C8 C9 C10 H11 180.0 179.9
C11 C10 C9 H12 180.0 179.9
C11 C10 C9 H11 180.6 180.0
C9 C10 C11 H12 180.0 180.1
C14 C11 C10 H12 1.6 360.0
C15 C14 C11 N19 183.5 180.2
C11 C14 C15 C16 177.9 180.0
C11 C14 C15 H15 357.9 0.0
C11 C14 N19 C18 181.9 179.7
O25 C24 C26 H18 199.1 214.4
O25 C24 N23 H24 182.9 180.0
C11 C14 C15 N19 176.5 179.8
C15 C14 N19 C18 358.4 359.5
C14 C15 C16 C17 359.8 360.0
C16 C15 C14 H15 180.0 180.0
C14 C15 C16 H16 179.8 180.0
C11 C14 N19 C15 183.5 180.2
N19 C14 C15 C16 1.4 0.3
N19 C14 C15 H15 181.4 180.3
C14 N19 C18 N22 181.3 180.4
C16 C15 C14 N19 1.4 0.3
C14 C15 C16 H15 180.0 180.0
C17 C16 C15 H16 180.0 180.0
C15 C16 C17 H17 179.2 180.0
N19 N20 C21 N23 179.0 180.1
N19 N20 C21 N22 1.0 359.4
N20 N19 C18 N22 0.5 0.1
N20 C21 N23 C24 18.3 179.2
N23 C21 N20 N22 178.1 180.8
N20 C21 N23 H24 198.3 359.1
C18 N22 C21 N20 359.2 0.7
N19 C18 N22 C21 0.1 359.5
N19 C18 C17 H17 180.6 179.8
C27 C28 C26 H18 108.5 107.5
C28 C27 C26 H18 251.4 252.5
H19 C27 C28 H20 218.9 145.1
C28 C26 C24 N23 229.4 248.7
C24 C26 C28 H18 149.1 145.0
C27 C26 C28 H18 251.5 252.5
C28 C26 C24 H18 210.9 214.3
C21 N23 C24 C26 183.6 180.0
C26 C24 N23 H24 3.5 0.0
C27 C26 C24 H18 145.4 145.7
N23 C24 C26 H18 18.4 34.4
C24 N23 C21 N22 196.3 0.1
C21 N23 C24 H24 180.0 179.9
C28 C26 C27 H18 108.6 107.5
C27 C26 C24 N23 163.9 180.1
C24 C26 C27 H18 214.5 215.0
C17 C16 C15 H15 179.8 180.0
C15 C16 C17 H16 180.0 180.0
C18 C17 C16 H17 180.0 180.1
N20 C21 N23 N22 182.0 179.1
C26 C24 N23 C21 183.6 180.0
C24 N23 C21 H24 180.0 180.1
C18 N22 C21 N23 181.0 180.0
N20 C21 N22 N23 178.2 180.8
N22 C21 N23 C24 196.3 0.1
N22 C21 N23 H24 16.3 180.0
C14 N19 C18 C17 0.6 0.6
C18 C17 C16 H16 179.3 180.0
C16 C17 C18 H17 180.0 179.9
N20 C21 N22 C18 359.2 0.7
N23 C21 N22 C18 181.0 180.0
N22 C18 C17 H17 359.7 0.0
H1 C5 N6 C1 194.0 167.9
C4 C5 H1 N6 241.9 239.5
C4 C5 H1 H2 121.0 119.7
H1 C5 N6 C7 12.9 42.8
N6 C5 H1 H2 239.1 240.2
H2 C5 N6 C1 73.3 48.1
C4 C5 H2 N6 118.1 120.4
C4 C5 H2 H1 239.0 240.2
H2 C5 N6 C7 252.2 283.0
N6 C5 H2 H1 120.9 119.8
C1 C2 H3 S3 122.4 240.7
H3 C2 S3 O30 206.5 46.7
H3 C2 S3 C4 84.9 292.5
S3 C2 H3 H4 118.8 239.6
H3 C2 C1 N6 294.8 57.2
C1 C2 H3 H4 241.2 120.4
H3 C2 C1 H7 54.9 177.3
H3 C2 C1 H8 174.8 297.1
C1 C2 H4 S3 237.6 119.2
H4 C2 S3 O30 325.8 286.3
H4 C2 S3 C4 204.1 172.1
S3 C2 H4 H3 241.2 120.4
H4 C2 C1 N6 175.6 177.6
C1 C2 H4 H3 118.8 239.6
H4 C2 C1 H7 295.7 297.7
H4 C2 C1 H8 55.6 57.6
S3 C4 H5 H6 119.8 239.5
H5 C4 C5 N6 302.1 182.4
H5 C4 C5 H1 61.7 302.5
H5 C4 C5 H2 182.4 62.3
S3 C4 H6 H5 240.2 120.4
H6 C4 C5 N6 182.2 302.7
H6 C4 C5 H1 301.9 62.9
H6 C4 C5 H2 62.5 182.6
H7 C1 C2 S3 175.3 57.4
C2 C1 H7 N6 239.8 239.6
H7 C1 C2 H3 54.9 177.3
H7 C1 C2 H4 295.7 297.7
C2 C1 H7 H8 119.9 119.9
H7 C1 N6 C7 46.8 76.9
N6 C1 H7 H8 240.1 240.3
H8 C1 C2 S3 295.2 177.3
C2 C1 H8 N6 120.2 120.4
H8 C1 C2 H3 174.8 297.1
H8 C1 C2 H4 55.6 57.6
C2 C1 H8 H7 240.1 240.1
H8 C1 N6 C7 286.8 317.1
N6 C1 H8 H7 119.9 119.8
N6 C7 H9 H10 120.4 240.0
H9 C7 C8 C9 332.5 210.0
N6 C7 H10 H9 239.5 120.0
H10 C7 C8 C9 212.2 330.0
C8 C9 H11 C10 180.0 180.1
H11 C9 C10 H12 0.7 0.1
H12 C10 C9 H11 0.7 0.1
H13 C12 C11 C14 358.2 360.0
H14 C13 C12 H13 359.3 359.8
H15 C15 C14 N19 181.4 180.3
C14 C15 H15 C16 180.0 180.0
H15 C15 C16 C17 179.8 180.0
H15 C15 C16 H16 359.8 360.0
C15 C16 H16 C17 180.0 180.0
H16 C16 C15 H15 359.8 360.0
H16 C16 C17 H17 359.3 359.9
H17 C17 C16 H16 359.3 359.9
H18 C26 C24 N23 18.4 34.4
C28 C27 H19 H20 144.7 214.2
H19 C27 C26 H18 141.9 360.0
C28 C27 H20 H19 215.3 145.7
H20 C27 C26 H18 0.8 145.0
H21 C28 C27 H19 219.0 145.1
H21 C28 C27 H20 0.1 360.0
H21 C28 C26 H18 358.9 215.0
H22 C28 C27 H19 359.9 0.0
H22 C28 C27 H20 141.0 214.9
H22 C28 C26 H18 218.0 0.1
C21 N23 H24 C24 180.0 180.1
H24 N23 C21 N22 16.3 180.0