PDB Chemical Component 2GP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2GP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.460 1.480
P O2P 1.473 1.609
P O3P 1.492 1.610
P O2' 1.659 1.609
O2P HOP2 0.950 0.967
O3P HOP3 0.950 0.967
O5' C5' 1.390 1.429
O5' HO5' 0.950 0.968
C5' C4' 1.550 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.451 1.443
C4' C3' 1.557 1.544
C4' H4' 1.114 1.090
O4' C1' 1.427 1.445
C3' O3' 1.393 1.429
C3' C2' 1.583 1.547
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.410 1.429
C2' C1' 1.591 1.544
C2' H2' 1.116 1.090
C1' N9 1.449 1.464
C1' H1' 1.115 1.090
N9 C8 1.398 1.364
N9 C4 1.373 1.368
C8 N7 1.297 1.302
C8 H8 1.103 1.079
N7 C5 1.419 1.356
C5 C6 1.424 1.414
C5 C4 1.358 1.399
C6 O6 1.201 1.219
C6 N1 1.385 1.351
N1 C2 1.361 1.362
N1 HN1 1.021 0.970
C2 N2 1.353 1.372
C2 N3 1.306 1.314
N2 HN21 1.020 0.970
N2 HN22 1.020 0.970
N3 C4 1.357 1.339

Bond Angles for 2GP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 116.8 109.5
O1P P O3P 113.0 109.4
O1P P O2' 94.2 109.4
O2P P O3P 111.8 109.5
O2P P O2' 109.5 109.5
P O2P HOP2 116.8 106.8
O3P P O2' 110.1 109.5
P O3P HOP3 113.1 106.8
P O2' C2' 122.3 106.9
C5' O5' HO5' 116.2 106.8
O5' C5' C4' 116.1 109.5
O5' C5' H5'1 109.8 109.5
O5' C5' H5'2 109.8 109.5
C4' C5' H5'1 109.8 109.5
C4' C5' H5'2 109.8 109.5
C5' C4' O4' 109.8 110.4
C5' C4' C3' 110.0 110.5
C5' C4' H4' 106.6 110.3
H5'1 C5' H5'2 100.4 109.4
O4' C4' C3' 101.2 104.8
O4' C4' H4' 114.7 110.4
C4' O4' C1' 111.3 105.3
C3' C4' H4' 114.6 110.4
C4' C3' O3' 112.1 110.5
C4' C3' C2' 103.0 104.1
C4' C3' H3' 112.4 110.5
O4' C1' C2' 107.5 104.8
O4' C1' N9 111.6 110.3
O4' C1' H1' 110.4 110.4
O3' C3' C2' 110.6 110.5
O3' C3' H3' 105.1 110.4
C3' O3' HO3' 112.0 106.8
C2' C3' H3' 113.9 110.6
C3' C2' O2' 107.9 110.5
C3' C2' C1' 99.8 104.0
C3' C2' H2' 116.1 110.5
O2' C2' C1' 108.5 110.8
O2' C2' H2' 108.5 110.5
C1' C2' H2' 115.5 110.4
C2' C1' N9 112.4 110.4
C2' C1' H1' 109.6 110.4
N9 C1' H1' 105.3 110.4
C1' N9 C8 122.3 126.3
C1' N9 C4 130.6 126.2
C8 N9 C4 105.7 107.5
N9 C8 N7 114.7 109.8
N9 C8 H8 126.0 125.1
N9 C4 C5 105.1 106.2
N9 C4 N3 125.9 134.2
N7 C8 H8 119.3 125.1
C8 N7 C5 101.6 109.3
N7 C5 C6 129.9 134.1
N7 C5 C4 112.9 107.2
C6 C5 C4 117.1 118.7
C5 C6 O6 127.0 120.9
C5 C6 N1 113.7 118.3
C5 C4 N3 128.8 119.6
O6 C6 N1 119.2 120.8
C6 N1 C2 123.2 120.3
C6 N1 HN1 119.3 119.8
C2 N1 HN1 117.5 119.8
N1 C2 N2 114.6 119.1
N1 C2 N3 124.7 121.9
N2 C2 N3 120.6 119.0
C2 N2 HN21 114.6 120.1
C2 N2 HN22 110.3 120.0
C2 N3 C4 112.3 121.1
HN21 N2 HN22 110.4 119.9

Torsion Angles for 2GP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 228.2 120.0
O2P P O1P O2' 114.3 240.0
O1P P O2P HOP2 179.9 300.0
O3P P O1P O2' 246.1 119.9
O1P P O3P HOP3 180.0 180.0
O1P P O2' C2' 213.2 60.0
O1P P O2P O3P 132.3 240.0
O1P P O2P O2' 254.6 120.0
O3P P O2P O2' 122.3 239.9
O2P P O3P HOP3 314.2 60.0
O2P P O2' C2' 92.8 180.0
O1P P O3P O2P 225.8 120.0
O1P P O3P O2' 103.8 240.1
O2P P O3P O2' 238.1 120.1
O3P P O2P HOP2 47.6 59.9
O3P P O2' C2' 329.5 300.1
O1P P O2' O2P 120.4 240.0
O1P P O2' O3P 243.7 119.9
O2P P O2' O3P 123.3 239.9
O2' P O2P HOP2 285.3 180.0
O2' P O3P HOP3 76.1 299.9
C3' C2' O2' P 218.3 238.5
P O2' C2' C1' 111.1 123.8
P O2' C2' H2' 344.8 1.1
HOP2 O2P P O3P 47.6 59.9
HOP2 O2P P O2' 285.3 180.0
HOP3 O3P P O2' 76.1 299.9
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 51.1 61.5
O5' C5' C4' C3' 161.6 176.9
O5' C5' C4' H4' 286.3 299.2
H5'1 C5' O5' H5'2 250.5 120.0
HO5' O5' C5' C4' 180.1 180.0
HO5' O5' C5' H5'1 305.3 60.0
HO5' O5' C5' H5'2 54.8 300.0
C4' C5' O5' HO5' 180.1 180.0
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 249.5 244.6
O4' C4' C5' H4' 124.8 122.3
C5' C4' O4' C1' 150.2 159.5
C3' C4' C5' H4' 235.2 237.7
C5' C4' C3' O3' 83.7 98.3
C5' C4' C3' C2' 202.5 217.0
C5' C4' C3' H3' 325.5 335.8
H5'1 C5' O5' HO5' 305.3 60.0
O5' C5' H5'1 C4' 231.2 120.0
O5' C5' H5'1 H5'2 115.6 240.0
C4' C5' H5'1 H5'2 244.4 120.0
H5'1 C5' C4' O4' 285.9 181.5
H5'1 C5' C4' C3' 36.3 296.9
H5'1 C5' C4' H4' 161.1 59.2
H5'2 C5' O5' HO5' 54.8 300.0
O5' C5' H5'2 C4' 128.8 240.0
O5' C5' H5'2 H5'1 244.4 120.0
C4' C5' H5'2 H5'1 115.6 240.0
H5'2 C5' C4' O4' 176.4 301.5
H5'2 C5' C4' C3' 286.8 56.9
H5'2 C5' C4' H4' 51.6 179.2
O4' C4' C5' H5'1 285.9 181.5
O4' C4' C5' H5'2 176.4 301.5
C5' C4' O4' C3' 116.2 118.9
C5' C4' O4' H4' 240.0 237.8
C3' C4' O4' H4' 123.8 118.8
O4' C4' C3' O3' 199.7 217.2
O4' C4' C3' C2' 318.5 335.9
O4' C4' C3' H3' 81.5 94.7
C4' O4' C1' C2' 347.4 319.5
C4' O4' C1' N9 223.7 200.6
C4' O4' C1' H1' 106.9 78.4
C3' C4' C5' H5'1 36.3 296.9
C3' C4' C5' H5'2 286.8 56.9
C5' C4' C3' O4' 244.0 241.1
C5' C4' C3' H4' 120.1 122.3
O4' C4' C3' H4' 236.1 241.1
C3' C4' O4' C1' 34.1 40.5
O3' C3' C4' C2' 241.1 241.3
O3' C3' C4' H3' 118.1 122.5
C4' C3' O3' HO3' 180.0 298.5
C2' C3' C4' H3' 237.0 241.2
C4' C3' C2' O2' 280.2 241.2
C4' C3' C2' C1' 33.4 0.1
C4' C3' C2' H2' 158.2 118.6
H4' C4' C5' H5'1 161.1 59.2
H4' C4' C5' H5'2 51.6 179.2
C5' C4' H4' O4' 121.7 122.3
C5' C4' H4' C3' 238.1 237.7
O4' C4' H4' C3' 116.4 115.4
H4' C4' O4' C1' 270.2 281.7
H4' C4' C3' O3' 323.6 336.1
H4' C4' C3' C2' 82.5 94.8
H4' C4' C3' H3' 205.5 213.5
C1' O4' C4' C3' 34.1 40.5
C1' O4' C4' H4' 270.2 281.7
C3' C2' C1' O4' 346.0 23.8
O2' C2' C1' O4' 98.7 142.6
O4' C1' C2' H2' 220.7 265.3
C2' C1' O4' N9 123.7 118.9
C2' C1' O4' H1' 240.4 241.1
N9 C1' O4' H1' 116.7 122.2
O4' C1' N9 C8 270.6 27.0
O4' C1' N9 C4 74.4 207.0
O3' C3' C4' H4' 323.6 336.1
C4' C3' O3' C2' 114.3 114.7
C4' C3' O3' H3' 237.6 237.4
C2' C3' O3' H3' 123.3 122.7
O3' C3' C2' O2' 40.1 359.9
O3' C3' C2' C1' 153.3 118.8
O3' C3' C2' H2' 278.2 237.3
P O2' C2' C3' 218.3 238.5
C2' C3' C4' H4' 82.5 94.8
C4' C3' C2' O3' 240.1 241.3
C4' C3' C2' H3' 122.0 118.7
O4' C1' C2' C3' 346.0 23.8
O3' C3' C2' H3' 241.9 237.4
C2' C3' O3' HO3' 65.7 183.8
O2' C2' C3' C1' 246.8 241.1
O2' C2' C3' H2' 121.9 122.6
C1' C2' C3' H2' 235.1 241.5
C3' C2' C1' N9 109.2 142.7
C3' C2' C1' H1' 225.9 265.0
H3' C3' C4' H4' 205.5 213.5
C4' C3' H3' O3' 122.2 122.6
C4' C3' H3' C2' 243.4 245.3
O3' C3' H3' C2' 121.2 122.7
H3' C3' O3' HO3' 302.4 61.1
H3' C3' C2' O2' 158.2 122.5
H3' C3' C2' C1' 271.4 241.4
H3' C3' C2' H2' 36.2 359.9
HO3' O3' C3' C2' 65.7 183.8
HO3' O3' C3' H3' 302.4 61.1
O4' C1' C2' O2' 98.7 142.6
O2' C2' C3' H3' 158.2 122.5
C3' C2' O2' C1' 107.3 114.7
C3' C2' O2' H2' 233.5 237.4
C1' C2' O2' H2' 126.2 122.7
O2' C2' C1' N9 221.9 261.4
O2' C2' C1' H1' 338.7 23.7
O4' C1' C2' N9 236.8 241.1
O4' C1' C2' H1' 120.1 118.8
C1' C2' C3' H3' 271.4 241.4
C3' C2' C1' O2' 247.2 241.3
C3' C2' C1' H2' 125.2 118.6
O2' C2' C1' H2' 238.0 237.3
N9 C1' C2' H1' 243.3 237.7
C2' C1' N9 C8 149.7 271.6
C2' C1' N9 C4 313.5 91.5
H2' C2' C3' H3' 36.2 359.9
C3' C2' H2' O2' 121.6 122.6
C3' C2' H2' C1' 243.6 245.5
O2' C2' H2' C1' 122.0 122.9
H2' C2' C1' N9 343.9 24.1
H2' C2' C1' H1' 100.7 146.4
O4' C1' N9 C2' 120.9 115.4
O4' C1' N9 H1' 240.2 237.8
N9 C1' C2' H2' 343.9 24.1
C2' C1' N9 H1' 119.3 122.3
C8 N9 C1' C4 196.2 180.0
C1' N9 C8 N7 165.7 180.0
C1' N9 C8 H8 345.7 0.1
C1' N9 C4 C5 195.8 180.0
C1' N9 C4 N3 11.7 0.1
O4' C1' H1' C2' 241.7 244.6
O4' C1' H1' N9 120.6 122.2
H1' C1' C2' H2' 100.7 146.4
C2' C1' H1' N9 238.9 237.7
H1' C1' N9 C8 30.4 149.2
H1' C1' N9 C4 194.2 329.2
C8 N9 C1' H1' 30.4 149.2
C1' N9 C8 C4 167.3 180.0
C8 N9 C4 C5 1.6 360.0
C8 N9 C4 N3 177.6 180.0
N7 C8 N9 H8 180.0 179.9
N9 C8 N7 C5 0.8 0.0
C4 N9 C1' H1' 194.2 329.2
C1' N9 C4 C8 194.2 180.0
C4 N9 C8 N7 358.4 360.0
C4 N9 C8 H8 178.4 180.1
N7 C5 C4 N9 358.7 0.0
C6 C5 C4 N9 176.5 180.0
C5 C4 N9 N3 184.0 180.0
C2 N3 C4 N9 183.1 179.9
N7 C8 N9 C4 358.4 360.0
N9 C8 N7 H8 180.0 180.1
C8 N7 C5 C6 183.0 180.0
C8 N7 C5 C4 0.3 360.0
H8 C8 N9 C4 178.4 180.1
N9 C8 H8 N7 180.0 179.9
H8 C8 N7 C5 180.8 179.9
N9 C4 C5 N7 358.7 0.0
C5 N7 C8 H8 180.8 179.9
C6 C5 N7 C4 182.7 180.0
N7 C5 C6 O6 0.2 360.0
N7 C5 C6 N1 176.3 179.7
N7 C5 C4 N3 183.0 180.0
N9 C4 C5 C6 176.5 180.0
N7 C5 C6 C4 177.3 180.0
C6 C5 C4 N3 0.7 360.0
O6 C6 C5 N1 183.8 180.2
C5 C6 N1 C2 2.7 0.6
C5 C6 N1 HN1 182.7 180.0
N9 C4 C5 N3 175.8 180.0
N7 C5 C4 C6 182.3 180.0
C4 C5 C6 O6 182.9 180.0
C4 C5 C6 N1 359.1 359.7
C2 N3 C4 C5 358.1 360.0
O6 C6 C5 C4 182.9 180.0
C5 C6 O6 N1 176.0 179.8
O6 C6 N1 C2 179.2 180.3
O6 C6 N1 HN1 359.2 359.7
N1 C6 C5 C4 359.1 359.7
C5 C6 N1 O6 183.5 180.2
C2 N1 C6 HN1 180.0 180.6
C6 N1 C2 N2 172.9 179.7
C6 N1 C2 N3 355.5 359.3
C6 N1 C2 HN1 180.0 179.4
N2 C2 N1 N3 177.4 180.4
N1 C2 N2 HN21 180.0 179.7
N1 C2 N2 HN22 54.7 359.5
N1 C2 N3 C4 3.7 0.4
C6 N1 HN1 C2 180.0 180.6
HN1 N1 C2 N2 352.9 0.3
HN1 N1 C2 N3 175.5 180.0
N2 C2 N1 HN1 352.9 0.3
N1 C2 N2 N3 182.5 179.7
N2 C2 N3 C4 186.5 180.0
HN21 N2 C2 HN22 125.3 180.2
N9 C4 N3 C2 183.1 179.9
C5 C4 N3 C2 358.1 360.0
N3 C2 N1 HN1 175.5 180.0
N1 C2 N3 N2 177.3 180.4
N3 C2 N2 HN21 357.5 360.0
N3 C2 N2 HN22 232.2 179.8
HN21 N2 C2 N3 357.5 360.0
C2 N2 HN21 HN22 234.7 179.8
HN22 N2 C2 N3 232.2 179.8
C2 N2 HN22 HN21 127.7 180.2
N9 C4 N3 C5 185.0 179.9