PDB Chemical Component 2GM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 2GM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C22 C21 1.515 1.530
C38 C39 1.615 1.555
C38 C37 1.507 1.548
C39 C40 1.574 1.536
O43 C21 1.530 1.434
O43 C41 1.499 1.422
C40 C41 1.551 1.527
C40 N36 1.357 1.478
C21 N20 1.487 1.465
C21 C23 1.496 1.510
N20 C18 1.483 1.348
C37 N36 1.457 1.468
C41 O42 1.380 1.430
C41 N25 1.401 1.473
C8 N6 1.513 1.468
C8 C9 1.530 1.530
C7 N6 1.454 1.468
N36 C34 1.447 1.347
N6 C5 1.549 1.470
C18 C9 1.520 1.506
C18 O19 1.232 1.213
C9 C10 1.518 1.531
C23 N25 1.327 1.345
C23 O24 1.237 1.213
N25 C26 1.508 1.465
C34 C26 1.516 1.510
C34 O35 1.242 1.214
C5 C4 1.536 1.535
C5 C11 1.554 1.529
C4 C3 1.490 1.508
C10 C11 1.520 1.532
C26 C27 1.528 1.530
C11 C12 1.538 1.498
C3 C2 1.380 1.324
C3 C17 1.398 1.464
C27 C28 1.527 1.507
C12 C17 1.361 1.397
C12 C13 1.435 1.359
C2 N1 1.372 1.387
C17 C16 1.386 1.399
C28 C29 1.413 1.382
C28 C33 1.415 1.383
C29 C30 1.398 1.382
C33 C32 1.407 1.382
C13 C14 1.447 1.395
N1 C16 1.403 1.362
C30 C31 1.402 1.383
C16 C15 1.364 1.394
C32 C31 1.399 1.382
C14 C15 1.408 1.388
C10 H1 1.100 1.089
C10 H2 1.100 1.090
C11 H3 1.100 1.090
C13 H4 1.080 1.080
C14 H5 1.080 1.079
C15 H6 1.080 1.080
N1 H7 1.000 0.970
C2 H8 1.080 1.081
C4 H9 1.100 1.089
C4 H10 1.100 1.090
C5 H11 1.100 1.091
C7 H13 1.100 1.091
C7 H14 1.100 1.090
C7 H15 1.100 1.090
C8 H16 1.100 1.090
C8 H17 1.100 1.090
C9 H18 1.100 1.090
N20 H19 1.000 0.971
C22 H20 1.100 1.091
C22 H21 1.100 1.090
C22 H22 1.101 1.089
O42 H23 0.950 0.966
C40 H24 1.100 1.090
C39 H25 1.100 1.090
C39 H26 1.100 1.090
C38 H27 1.100 1.090
C38 H28 1.100 1.090
C37 H29 1.100 1.090
C37 H30 1.100 1.090
C26 H31 1.100 1.090
C27 H32 1.100 1.090
C27 H33 1.100 1.090
C29 H34 1.080 1.080
C30 H35 1.080 1.080
C31 H36 1.080 1.080
C32 H37 1.080 1.081
C33 H38 1.080 1.080

Bond Angles for 2GM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C22 C21 C23 113.3 110.0
C38 C39 H25 111.9 111.0
C38 C39 H26 111.9 111.0
C38 C37 N36 104.1 106.1
C37 C38 H27 110.8 111.0
C37 C38 H28 110.8 110.9
C38 C37 H29 110.8 110.1
C38 C37 H30 110.8 110.2
C39 C40 N36 101.6 106.5
C39 C40 H24 105.1 111.2
O43 C21 C23 103.9 106.9
O43 C41 O42 107.3 109.8
O43 C41 N25 103.1 108.3
C40 N36 C37 114.5 108.9
C40 N36 C34 123.5 123.6
N36 C40 H24 107.5 110.6
C21 N20 H19 119.1 120.0
C21 C23 N25 107.5 108.0
C21 C23 O24 123.1 126.0
C37 N36 C34 122.0 127.4
N36 C37 H29 110.8 110.1
N36 C37 H30 110.8 110.1
C41 O42 H23 109.5 114.0
C41 N25 C26 118.5 125.0
C9 C8 H16 107.4 109.4
C9 C8 H17 107.4 109.4
C8 C9 H18 108.9 109.5
N36 C34 C26 122.4 120.0
N36 C34 O35 120.0 120.0
N6 C5 H11 106.6 107.7
C18 C9 H18 109.0 109.6
C9 C10 H1 109.1 109.6
C9 C10 H2 109.1 109.5
O24 C23 N25 129.4 126.0
C23 N25 C26 123.5 126.9
N25 C26 C34 107.9 110.3
N25 C26 C27 122.4 109.3
N25 C26 H31 103.7 109.3
O35 C34 C26 117.5 119.9
C34 C26 C27 113.4 109.4
C34 C26 H31 103.6 109.3
C5 C4 H9 108.8 109.8
C5 C4 H10 108.8 109.8
C5 C11 H3 102.5 108.4
C10 C11 C12 117.6 109.6
C11 C10 H1 109.1 109.5
C11 C10 H2 109.1 109.5
C10 C11 H3 102.8 109.2
C26 C27 C28 115.4 109.5
C27 C26 H31 103.5 109.2
C26 C27 H32 108.0 109.4
C26 C27 H33 107.9 109.5
C11 C12 C17 116.6 116.5
C11 C12 C13 126.9 128.3
C12 C11 H3 102.7 109.2
C3 C2 H8 125.7 124.8
C27 C28 C29 119.0 120.0
C27 C28 C33 121.3 120.0
C28 C27 H32 108.0 109.5
C28 C27 H33 108.0 109.5
C17 C12 C13 116.4 115.3
C12 C17 C16 124.5 126.1
C12 C13 C14 119.8 120.4
C12 C13 H4 120.1 119.8
C2 N1 H7 125.4 124.9
C17 C16 C15 120.6 117.3
C29 C28 C33 119.7 120.0
C28 C29 C30 120.1 120.1
C28 C29 H34 119.9 120.0
C28 C33 C32 120.1 119.9
C28 C33 H38 120.0 120.0
C29 C30 C31 119.5 120.0
C30 C29 H34 119.9 120.0
C29 C30 H35 120.3 120.1
C33 C32 H37 120.5 120.0
C13 C14 C15 119.5 124.2
C14 C13 H4 120.1 119.8
C13 C14 H5 120.3 117.9
C31 C30 H35 120.3 120.0
C30 C31 H36 119.2 120.0
C16 C15 H6 120.4 121.6
C32 C31 H36 119.3 120.1
C15 C14 H5 120.3 118.0
C14 C15 H6 120.4 121.5
H1 C10 H2 109.5 109.6
H9 C4 H10 109.5 109.8
H13 C7 H14 109.5 109.4
H13 C7 H15 109.5 109.5
H14 C7 H15 109.5 109.5
H16 C8 H17 109.5 109.5
H20 C22 H21 109.5 109.4
H20 C22 H22 109.5 109.5
H21 C22 H22 109.5 109.5
H25 C39 H26 109.4 110.8
H27 C38 H28 109.5 110.9
H29 C37 H30 109.5 110.2
H32 C27 H33 109.5 109.5

Torsion Angles for 2GM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O43 C21 C22 C23 245.2 242.6
C22 C21 N20 H19 349.5 118.8
C22 C21 C23 N25 240.1 245.5
C22 C21 C23 O24 61.5 65.6
C38 C39 C40 N36 321.2 328.6
C38 C39 C40 H24 73.1 89.1
H25 C39 C38 H26 236.8 123.7
C37 C38 C39 H25 147.6 279.8
C37 C38 C39 H26 270.8 156.1
C40 N36 C37 C38 342.3 12.7
C38 C37 N36 C34 162.0 188.6
N36 C37 C38 H29 240.8 240.9
N36 C37 C38 H30 119.2 119.2
H27 C38 C37 H28 121.7 123.7
H29 C37 C38 H30 238.3 238.3
C39 C40 N36 C37 37.2 12.1
C39 C40 N36 C34 217.4 196.0
N36 C40 C39 H24 248.1 239.5
C22 C21 O43 C23 120.8 119.4
O43 C21 N20 H19 231.2 357.5
O43 C21 C23 N25 357.6 4.9
O43 C21 C23 O24 178.9 184.9
C41 O43 C21 C23 2.9 4.9
O43 C41 O42 H23 311.0 300.7
O43 C41 N25 C26 182.7 197.1
C40 C41 O42 H23 187.9 176.7
C40 C41 N25 C26 306.9 318.3
C38 C37 N36 C40 342.3 12.7
C39 C40 N36 H24 110.1 120.9
C37 N36 C40 C34 179.7 176.1
C40 N36 C37 H29 223.2 253.6
C40 N36 C37 H30 101.5 131.9
C40 N36 C34 C26 1.4 5.7
C40 N36 C34 O35 179.7 185.5
C23 C21 N20 H19 115.3 240.0
O24 C23 C21 N25 181.3 180.1
C21 C23 N25 C26 179.1 166.4
N20 C18 C9 H18 5.7 299.8
N36 C37 C38 H27 231.0 210.0
N36 C37 C38 H28 109.2 86.3
C38 C37 N36 H29 119.1 119.1
C38 C37 N36 H30 240.9 240.8
C40 N36 C37 C34 180.3 184.1
C37 N36 C40 H24 287.1 251.2
C37 N36 C34 C26 181.8 190.3
C37 N36 C34 O35 0.0 10.2
H29 C37 N36 H30 121.7 121.7
O43 C41 O42 N25 248.1 241.1
O42 C41 N25 C26 68.2 77.3
O43 C41 N25 O42 114.5 119.8
C23 N25 C41 C26 178.2 178.7
C41 N25 C26 C34 42.2 3.7
C41 N25 C26 C27 267.7 243.4
C41 N25 C26 H31 151.6 123.9
C8 N6 C5 H11 276.0 303.8
C18 C9 C8 H18 241.6 239.8
C8 C9 C10 H1 68.6 182.4
C8 C9 C10 H2 188.2 62.2
H16 C8 C9 H17 117.7 120.0
C7 N6 C5 H11 37.5 68.0
C40 N36 C34 C37 179.7 175.3
C34 N36 C40 H24 107.4 75.1
C34 N36 C37 H29 42.9 69.5
C34 N36 C37 H30 281.2 307.8
N25 C26 C34 N36 344.5 16.6
O35 C34 N36 C26 178.3 179.8
N36 C34 C26 C27 123.5 136.9
N36 C34 C26 H31 235.0 256.4
N6 C5 C4 H9 302.1 62.8
N6 C5 C4 H10 61.4 302.0
N6 C5 C11 H3 69.0 60.3
C18 C9 C8 H16 45.6 59.3
C18 C9 C8 H17 287.9 299.3
C8 C9 C18 H18 118.3 120.1
C18 C9 C10 H1 308.6 62.4
C18 C9 C10 H2 68.2 302.2
O19 C18 C9 H18 184.9 119.9
C11 C10 C9 H1 239.8 119.9
C11 C10 C9 H2 120.2 240.1
C9 C10 C11 H3 299.2 298.9
H1 C10 C9 H2 240.4 120.2
O43 C41 N25 C23 0.9 15.8
C21 C23 N25 O24 181.5 180.1
C41 N25 C23 C26 181.9 181.3
C23 N25 C26 C34 224.1 185.3
C23 N25 C26 C27 89.6 64.9
C23 N25 C26 H31 333.5 305.5
C21 C23 O24 N25 178.3 179.9
O24 C23 N25 C26 357.7 346.3
N36 C34 C26 N25 344.5 16.6
O35 C34 C26 N25 166.2 196.8
C34 C26 N25 C27 134.5 120.3
C34 C26 N25 H31 250.6 239.8
N25 C26 C27 C28 300.1 56.6
C27 C26 N25 H31 116.1 119.5
N25 C26 C27 H32 60.9 176.6
N25 C26 C27 H33 179.2 296.7
N36 C34 C26 O35 178.3 179.8
N25 C26 C34 C27 221.0 239.7
N25 C26 C34 H31 109.5 120.2
C34 C26 C27 C28 167.8 295.7
C27 C26 C34 H31 248.5 240.5
C34 C26 C27 H32 288.7 55.7
C34 C26 C27 H33 46.9 175.7
N36 C34 O35 C26 181.7 180.2
N25 C26 C34 O35 166.2 196.8
O35 C34 C26 C27 305.2 317.1
O35 C34 C26 H31 56.7 76.6
C4 C5 C11 H3 302.4 298.0
H9 C4 C5 H10 240.7 120.8
C5 C11 C10 H1 289.9 177.3
C5 C11 C10 H2 170.3 297.4
C10 C11 C5 H3 249.0 241.1
C12 C11 C5 H3 109.7 119.9
C4 C3 C2 H8 1.3 359.5
C9 C10 C11 H1 120.2 240.1
C9 C10 C11 H2 239.8 119.9
C5 C11 C10 H3 110.9 118.5
C10 C11 C12 C17 191.3 210.3
C10 C11 C12 C13 15.6 30.5
C12 C11 C10 H3 248.1 240.4
H1 C10 C11 H2 119.6 239.9
N25 C26 C27 C34 132.3 120.9
N25 C26 C27 H31 243.9 240.5
C34 C26 C27 H31 111.6 119.6
C26 C27 C28 C29 123.0 84.3
C26 C27 C28 C33 300.4 264.1
C28 C27 C26 H32 239.1 240.0
C28 C27 C26 H33 120.8 120.0
H32 C27 C26 H33 241.7 240.0
C5 C11 C12 H3 250.4 240.6
C12 C11 C10 H1 67.1 299.2
C12 C11 C10 H2 307.5 59.4
C10 C11 C12 H3 112.0 119.6
C17 C12 C11 C13 175.7 179.8
C11 C12 C17 C16 181.6 180.5
C11 C12 C13 C14 177.2 179.7
C11 C12 C13 H4 357.2 359.7
C3 C2 N1 H7 178.1 179.9
C28 C27 C26 H31 56.2 176.2
C26 C27 C28 H32 120.9 119.9
C26 C27 C28 H33 239.2 240.0
C29 C28 C27 C33 182.6 180.2
C27 C28 C29 C30 179.8 180.0
C27 C28 C29 H34 359.8 0.0
C27 C28 C33 C32 180.4 179.7
C27 C28 C33 H38 0.5 0.0
H32 C27 C28 H33 118.3 120.1
C11 C12 C17 C13 183.9 180.2
C17 C12 C11 H3 79.3 90.7
C17 C12 C13 C14 1.5 359.9
C17 C12 C13 H4 181.5 179.9
C12 C17 C16 C15 1.5 359.7
C11 C12 C13 C17 175.7 179.8
C13 C12 C11 H3 263.6 270.9
C13 C12 C17 C16 357.7 0.3
C12 C13 C14 C15 360.0 360.0
C14 C13 C12 H4 180.0 180.0
C12 C13 C14 H5 180.0 179.9
C16 C17 C12 C13 357.7 0.3
C17 C16 C15 H6 180.2 180.0
C27 C28 C29 C33 177.4 179.8
C29 C28 C27 H32 2.1 324.4
C29 C28 C27 H33 243.8 204.3
C29 C28 C33 C32 357.8 359.5
C29 C28 C33 H38 177.8 179.8
C28 C29 C30 C31 358.9 0.0
C30 C29 C28 H34 180.0 179.9
C28 C29 C30 H35 178.9 180.0
C27 C28 C33 C29 182.6 180.2
C33 C28 C27 H32 179.5 144.1
C33 C28 C27 H33 61.2 24.1
C33 C28 C29 C30 2.4 0.2
C33 C28 C29 H34 182.4 180.3
C28 C33 C32 H37 180.7 180.3
C30 C29 C28 C33 2.4 0.2
C28 C29 C30 H34 180.0 180.1
C31 C30 C29 H35 180.0 180.0
C29 C30 C31 H36 179.6 180.0
C28 C33 C32 H38 180.0 180.3
C33 C32 C31 H36 180.6 179.7
C12 C13 C14 H4 180.0 180.0
C15 C14 C13 H5 180.0 180.1
C13 C14 C15 H6 179.2 180.1
N1 C16 C15 H6 0.9 359.9
C31 C30 C29 H34 178.9 180.0
C29 C30 C31 H35 180.0 180.0
C32 C31 C30 H36 180.0 180.0
C16 C15 C14 H5 179.2 180.1
C14 C15 C16 H6 180.0 180.1
C28 C33 C32 C31 0.7 0.5
C32 C31 C30 H35 179.5 180.0
C30 C31 C32 H36 180.0 180.0
C17 C16 C15 C14 0.2 0.1
C15 C14 C13 H4 180.0 180.0
C13 C14 C15 H5 180.0 179.9
C16 C15 C14 H6 180.0 179.9
C9 C10 H1 H2 119.3 239.8
H1 C10 C11 C12 67.1 299.2
C11 C10 H1 H2 240.7 120.1
H1 C10 C11 H3 179.0 58.8
C9 C10 H2 H1 240.7 120.2
H2 C10 C11 C12 307.5 59.4
C11 C10 H2 H1 119.3 239.9
H2 C10 C11 H3 59.4 179.0
C10 C11 H3 C12 237.4 240.1
H3 C11 C10 H1 179.0 58.8
H3 C11 C10 H2 59.4 179.0
H3 C11 C12 C17 79.3 90.7
H3 C11 C12 C13 263.6 270.9
C12 C13 H4 C14 180.0 180.0
H4 C13 C14 C15 180.0 180.0
H4 C13 C14 H5 360.0 359.9
C13 C14 H5 C15 180.0 180.1
H5 C14 C13 H4 360.0 359.9
H5 C14 C15 H6 359.2 0.2
H6 C15 C14 H5 359.2 0.2
H8 C2 N1 H7 358.1 359.9
C5 C4 H9 H10 118.9 239.2
C5 C4 H10 H9 241.1 120.8
H11 C5 C4 H9 186.3 305.9
H11 C5 C4 H10 305.6 185.1
H11 C5 C11 H3 187.1 177.6
H14 C7 H13 H15 120.0 119.9
H13 C7 H14 H15 240.0 240.1
H13 C7 H15 H14 120.0 119.9
C9 C8 H16 H17 243.7 240.0
H16 C8 C9 H18 164.0 179.5
C9 C8 H17 H16 116.3 120.0
H17 C8 C9 H18 46.3 59.5
H18 C9 C8 H16 164.0 179.5
H18 C9 C8 H17 46.3 59.5
H18 C9 C10 H1 190.4 302.3
H18 C9 C10 H2 310.0 182.1
H20 C22 C21 C23 294.8 299.5
H21 C22 H20 H22 120.0 120.0
H21 C22 C21 C23 54.8 59.4
H20 C22 H21 H22 240.0 240.0
H22 C22 C21 C23 174.8 179.4
H20 C22 H22 H21 120.0 120.0
C39 C40 H24 N36 252.4 242.0
H24 C40 N36 C37 287.1 251.2
H24 C40 N36 C34 107.4 75.1
C38 C39 H25 H26 124.6 236.2
H25 C39 C40 N36 202.8 86.7
H25 C39 C40 H24 314.7 207.2
C38 C39 H26 H25 235.4 123.8
H26 C39 C40 N36 79.5 210.4
H26 C39 C40 H24 191.5 330.9
H27 C38 C39 H25 266.7 38.0
H27 C38 C39 H26 29.9 274.3
H27 C38 C37 N36 231.0 210.0
C37 C38 H27 H28 237.5 236.3
H27 C38 C37 H29 350.1 329.1
H27 C38 C37 H30 111.8 90.9
H28 C38 C39 H25 28.4 161.7
H28 C38 C39 H26 151.7 38.0
H28 C38 C37 N36 109.2 86.3
C37 C38 H28 H27 122.5 123.8
H28 C38 C37 H29 228.4 205.4
H28 C38 C37 H30 350.1 327.1
C38 C37 H29 N36 244.9 243.4
H29 C37 C38 H27 350.1 329.1
H29 C37 C38 H28 228.4 205.4
C38 C37 H29 H30 122.4 121.7
H29 C37 N36 C34 42.9 69.5
N36 C37 H29 H30 237.5 238.4
C38 C37 H30 N36 115.1 116.7
H30 C37 C38 H27 111.8 90.9
H30 C37 C38 H28 350.1 327.1
C38 C37 H30 H29 237.6 238.3
H30 C37 N36 C34 281.2 307.8
N36 C37 H30 H29 122.5 121.6
N25 C26 H31 C34 247.4 239.2
N25 C26 H31 C27 128.8 119.5
C34 C26 H31 C27 241.4 240.4
H31 C26 C27 C28 56.2 176.2
H31 C26 C27 H32 177.1 296.1
H31 C26 C27 H33 295.4 56.2
C26 C27 H32 C28 234.6 240.0
H32 C27 C26 H31 177.1 296.1
C26 C27 H32 H33 117.3 120.0
H32 C27 C28 C29 2.1 324.4
H32 C27 C28 C33 179.5 144.1
C28 C27 H32 H33 242.7 240.0
C26 C27 H33 C28 125.4 120.0
H33 C27 C26 H31 295.4 56.2
C26 C27 H33 H32 242.7 240.0
H33 C27 C28 C29 243.8 204.3
H33 C27 C28 C33 61.2 24.1
C28 C27 H33 H32 117.3 120.0
H34 C29 C28 C33 182.4 180.3
C28 C29 H34 C30 180.0 179.9
H34 C29 C30 C31 178.9 180.0
H34 C29 C30 H35 359.0 359.9
C29 C30 H35 C31 180.0 180.0
H35 C30 C29 H34 359.0 359.9
H35 C30 C31 H36 359.5 360.0
H36 C31 C30 H35 359.5 360.0
H37 C32 C31 H36 0.6 0.0
C28 C33 H38 C32 180.0 179.7
H38 C33 C32 H37 0.7 360.0