Atom Nomenclature for 2GG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 2GG

Atom Name (V3) Atom Name (V2)
C22 C22
O21 O21
C18 C18
C19 C19
C20 C20
C17 C17
C16 C16
C7 C7
C3 C3
C2 C2
C8 C8
O9 O9
N10 N10
C26 C26
C27 C27
N1 N1
C4 C4
C6 C6
C11 C11
C12 C12
CL25 CL25
C13 C13
O24 O24
C14 C14
C15 C15
O23 O23
O3 O3
H221 1H22
H222 2H22
H223 3H22
H19 H19
H17 H17
H20 H20
H16 H16
H10 H10
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H273 3H27
H11 H11
H24 H24
H14 H14
H23 H23