PDB Chemical Component 2GF

Ideal Model

Chemical Description

Name [(2R,5R)-5-(4-amino-5-chloro-2-oxopyrimidin-1(2H)-yl)-3-oxotetrahydrofuran-2-yl]methyl dihydrogen phosphate
Synonyms 5-CHLORO DEOXYCYTIDINE-5'-MONOPHOSPHATE
Formula C9 H11 Cl N3 O7 P
Formal charge 0
Molecular weight 339.626 g/mol
Component type DNA LINKING

Chemical features

Atom count 32
Chiral atom count 2
Chiral atoms C4' C1'
Observed leaving atoms OP3
Bond count 33
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2R,5R)-5-(4-amino-5-chloro-2-oxopyrimidin-1(2H)-yl)-3-oxotetrahydrofuran-2-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(2R,5R)-5-(4-azanyl-5-chloranyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanylidene-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1Cl)[C@H]2CC(=O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1Cl)[CH]2CC(=O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H](O[C@@H](C1=O)COP(=O)(O)O)N2C=C(C(=NC2=O)N)Cl
InChI descriptor InChI=1S/C9H11ClN3O7P/c10-4-2-13(9(15)12-8(4)11)7-1-5(14)6(20-7)3-19-21(16,17)18/h2,6-7H,1,3H2,(H2,11,12,15)(H2,16,17,18)/t6-,7-/m1/s1
InChIKey descriptor ALLUETJMPVZHQY-RNFRBKRXSA-N

Status Information

Last modified 2021-03-01
Created 2013-10-15
Release status REL
Model PDB code 4MGW
Processing site RCSB